mRNA_P-wetherbeei_contig6122.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6122.3.1
Unique NamemRNA_P-wetherbeei_contig6122.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6122.3.1 vs. uniprot
Match: A0A835Z1R1_9STRA (Tubulin binding cofactor C-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.120e-6
Identity = 39/101 (38.61%), Postives = 50/101 (49.50%), Query Frame = 3 
Query:  327 FWVRWSDLEALGFLISGGLSLDDQDHRGLAQLCPLWDAAAVVRSNAADLLLPSTGGPKGGAGGASKGDDACETAPRARAQDVLNWLAAAMTINEHVYPVPP 629
            F V  +DL ALGFLI+GG +LDD   R L  LCPL                          GGA++G       P   A +V +WLAAA+T+N+ +YP PP
Sbjct:  197 FAVARADLSALGFLIAGGRALDDASQRDLCDLCPL------------------------AGGGATRG-------PVGSAAEVADWLAAALTVNDVLYPAPP 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6122.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1R1_9STRA1.120e-638.61Tubulin binding cofactor C-domain-containing prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6122contigP-wetherbeei_contig6122:2580..3487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size909
Hectar predicted targeting categoryother localisation
Exons1
Cds size882
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.9481354-UTR-P-wetherbeei_contig6122:2579..26051683186889.9481354-UTR-P-wetherbeei_contig6122:2579..2605Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6122 2580..2605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.9596407-CDS-P-wetherbeei_contig6122:2605..34871683186889.9596407-CDS-P-wetherbeei_contig6122:2605..3487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6122 2606..3487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6122.3.1prot_P-wetherbeei_contig6122.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6122 2606..3487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6122.3.1

>prot_P-wetherbeei_contig6122.3.1 ID=prot_P-wetherbeei_contig6122.3.1|Name=mRNA_P-wetherbeei_contig6122.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=294bp
MRLHARSTDEAHRLTFVKKHLGLLLQLLCTRVSGPSPGTPPLPAPPPAKQ
QQQPTAAAAGSPGPPVAKDSVPSPSSPPGLGSHASPPGAGAPTFPLAEQE
FWVRWSDLEALGFLISGGLSLDDQDHRGLAQLCPLWDAAAVVRSNAADLL
LPSTGGPKGGAGGASKGDDACETAPRARAQDVLNWLAAAMTINEHVYPVP
PSPAAVFFAEQHEDGPLAATAAVGGGGGSFDGVVASAAAGHAAGSAAPGG
ANGSGSSSSVSGGGIGAVATGSDQASAPLLINCVCRGTILHSDD
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mRNA from alignment at P-wetherbeei_contig6122:2580..3487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6122.3.1 ID=mRNA_P-wetherbeei_contig6122.3.1|Name=mRNA_P-wetherbeei_contig6122.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=908bp|location=Sequence derived from alignment at P-wetherbeei_contig6122:2580..3487+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTGAGCCCGACGCGGACGCGGGTGATGCGGCTGCACGCCCGCAGTACC
GATGAGGCGCACCGCCTCACTTTTGTTAAGAAGCACCTCGGCCTCCTGCT
GCAGCTGCTCTGCACGAGGGTCAGCGGGCCGTCGCCAGGGACGCCACCGC
TGCCGGCGCCGCCGCCGGCAAAGCAGCAGCAGCAGCCAACGGCAGCAGCA
GCGGGCTCGCCGGGGCCTCCGGTGGCGAAGGATAGCGTCCCCAGCCCGTC
GTCGCCGCCGGGGCTAGGGAGCCACGCGTCGCCGCCCGGGGCTGGGGCGC
CGACGTTCCCGCTGGCGGAGCAGGAGTTTTGGGTCCGGTGGTCGGACTTA
GAGGCGCTGGGATTCCTCATCTCGGGAGGGCTCTCCTTGGATGACCAGGA
CCACCGAGGGCTGGCGCAGCTGTGCCCGCTGTGGGACGCTGCCGCTGTTG
TGCGAAGCAACGCTGCGGACCTTCTGCTGCCGTCGACGGGAGGGCCAAAA
GGGGGAGCCGGCGGCGCCAGCAAAGGCGACGACGCTTGCGAAACGGCACC
TCGGGCGCGTGCGCAGGACGTGCTGAACTGGCTGGCAGCGGCGATGACCA
TCAACGAGCACGTGTATCCCGTGCCGCCGTCGCCGGCGGCCGTCTTCTTC
GCAGAGCAGCACGAAGACGGACCCTTGGCCGCGACCGCCGCCGTCGGCGG
CGGAGGCGGCTCGTTCGACGGCGTCGTTGCCTCGGCCGCTGCCGGGCACG
CAGCTGGCTCGGCGGCGCCAGGCGGCGCCAACGGGAGCGGCAGCAGTAGC
AGCGTCAGCGGCGGCGGCATCGGGGCGGTGGCAACGGGGTCAGACCAGGC
AAGTGCGCCGCTGCTGATCAACTGCGTGTGCCGCGGAACGATCCTCCACA
GCGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6122:2580..3487+

>mRNA_P-wetherbeei_contig6122.3.1 ID=mRNA_P-wetherbeei_contig6122.3.1|Name=mRNA_P-wetherbeei_contig6122.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=882bp|location=Sequence derived from alignment at P-wetherbeei_contig6122:2580..3487+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCTGCACGCCCGCAGTACCGATGAGGCGCACCGCCTCACTTTTGT
TAAGAAGCACCTCGGCCTCCTGCTGCAGCTGCTCTGCACGAGGGTCAGCG
GGCCGTCGCCAGGGACGCCACCGCTGCCGGCGCCGCCGCCGGCAAAGCAG
CAGCAGCAGCCAACGGCAGCAGCAGCGGGCTCGCCGGGGCCTCCGGTGGC
GAAGGATAGCGTCCCCAGCCCGTCGTCGCCGCCGGGGCTAGGGAGCCACG
CGTCGCCGCCCGGGGCTGGGGCGCCGACGTTCCCGCTGGCGGAGCAGGAG
TTTTGGGTCCGGTGGTCGGACTTAGAGGCGCTGGGATTCCTCATCTCGGG
AGGGCTCTCCTTGGATGACCAGGACCACCGAGGGCTGGCGCAGCTGTGCC
CGCTGTGGGACGCTGCCGCTGTTGTGCGAAGCAACGCTGCGGACCTTCTG
CTGCCGTCGACGGGAGGGCCAAAAGGGGGAGCCGGCGGCGCCAGCAAAGG
CGACGACGCTTGCGAAACGGCACCTCGGGCGCGTGCGCAGGACGTGCTGA
ACTGGCTGGCAGCGGCGATGACCATCAACGAGCACGTGTATCCCGTGCCG
CCGTCGCCGGCGGCCGTCTTCTTCGCAGAGCAGCACGAAGACGGACCCTT
GGCCGCGACCGCCGCCGTCGGCGGCGGAGGCGGCTCGTTCGACGGCGTCG
TTGCCTCGGCCGCTGCCGGGCACGCAGCTGGCTCGGCGGCGCCAGGCGGC
GCCAACGGGAGCGGCAGCAGTAGCAGCGTCAGCGGCGGCGGCATCGGGGC
GGTGGCAACGGGGTCAGACCAGGCAAGTGCGCCGCTGCTGATCAACTGCG
TGTGCCGCGGAACGATCCTCCACAGCGACGAC
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