mRNA_P-wetherbeei_contig6122.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6122.2.1
Unique NamemRNA_P-wetherbeei_contig6122.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6122.2.1 vs. uniprot
Match: A0A6H5K6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.080e-27
Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 3 
Query:  309 RVWAVPTSPFYSSGHPAA----PLFNLVHALRDVNNENVRYTTWITEAWRVLQWSEPAAKLFWEMLSLFHEQTERERRRSTGAPAAGRR-AAPAAELPISRLSLFLFLHLTPDSTTIKVGSSRTFM-DAMWPTEEAPGA--SSPKRA 725
            R   VP SP  + G   A    PLF L+ A+R+VN + VRYTTWITE WRVLQWSEP+AKLFWEML ++   + R       A   G+     + +L +S+L LFLFLHL  DST  ++ S R    D++WP+EEA  A   SP+RA
Sbjct:   21 RATGVPLSPARNLGPGTAAGPSPLFVLLKAVREVNPDTVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLGSTEKVAVGVGKEDKVQSVQLSVSQLGLFLFLHLHTDSTNHRLASQRAHQADSVWPSEEAAAALGGSPRRA 167
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BLAST of mRNA_P-wetherbeei_contig6122.2.1 vs. uniprot
Match: D7FP07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP07_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 4.040e-26
Identity = 69/147 (46.94%), Postives = 90/147 (61.22%), Query Frame = 3 
Query:  309 RVWAVPTSPFYSSGHPAA----PLFNLVHALRDVNNENVRYTTWITEAWRVLQWSEPAAKLFWEMLSLFHEQTERERRRSTGAPAAGRR-AAPAAELPISRLSLFLFLHLTPDSTTIKVGSSRTFM-DAMWPTEEAPGA--SSPKRA 725
            R   VP SP  + G   A    PLF L+ A+R+VN + VRYTTWITE WRVLQWSEP+AKLFWEML ++   + R       +   G+     + +L +S+L LFLFLHL  DST  ++ S R    D++WP+EEA  A   SP+RA
Sbjct:   21 RATGVPLSPARNLGPGTAAGPSPLFVLLKAVREVNPDTVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLGSTEKMSSGVGKEDKVQSVQLSVSQLGLFLFLHLHTDSTNHRLASQRAHQADSVWPSEEAAAALGGSPRRA 167
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BLAST of mRNA_P-wetherbeei_contig6122.2.1 vs. uniprot
Match: K8ZAD7_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZAD7_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 4.310e-9
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 3 
Query:  423 TWITEAWRVLQWSEPAAKLFWEMLSLFHEQTERERRRSTGAPAAGRRAAPAAELPIS------RLSLFLFLHLTPDSTTIKVGSSRTFMDAMWP 686
            TWI+E+ RVLQW EP A LFWEML+LF   T R      G    G      A +P S       LSLFL+LHL PD++T KV +     + +WP
Sbjct:   78 TWISESQRVLQWGEPTACLFWEMLNLFLPPTHRRPAPRKGGGEDGTEGGSEAGVPPSDRVTLVELSLFLWLHL-PDAST-KVSTHPATYNVVWP 169
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BLAST of mRNA_P-wetherbeei_contig6122.2.1 vs. uniprot
Match: A0A7S2M630_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M630_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.470e-8
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 3 
Query:  366 LFNLVHALRDVNNENVRYTTWITEAWRVLQWSEPAAKLFWEMLSLFH 506
            L + V AL    +    YT WITEAW +LQWSEP+A LFWEM +++H
Sbjct:   60 LLSTVEALESAGSWRTHYTVWITEAWNILQWSEPSAALFWEMANMYH 106
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BLAST of mRNA_P-wetherbeei_contig6122.2.1 vs. uniprot
Match: A0A7S1UIT8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIT8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.380e-6
Identity = 40/120 (33.33%), Postives = 60/120 (50.00%), Query Frame = 3 
Query:  366 LFNLVHALRDVNNENVRYTTWITEAWRVLQWSEPAAKLFWEMLSLFHEQTERERRRSTGAPAAGRRAAPAA-ELPISRLSLFLFLHLTPDS---------TTIKVGSSRTFMDAMWPTEE 695
            +++L  ALR ++ E+VRYT+WIT +W VL W+E  A+LFWE  S   E       R  GAP +      A  +LP   +   L + L   +         ++ K  S R   D++WPT +
Sbjct:   31 VWSLATALRAIDAESVRYTSWITHSWAVLGWTESVARLFWECASAMAEP-----HRGVGAPHSRNPEETALFDLPFHVVVAMLVMQLCRPTAAHPPPGGPSSPKSPSMRQGFDSVWPTNQ 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6122.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K6Y6_9PHAE1.080e-2747.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP07_ECTSI4.040e-2646.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8ZAD7_NANGC4.310e-944.68Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2M630_9STRA3.470e-853.19Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1UIT8_9STRA1.380e-633.33Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6122contigP-wetherbeei_contig6122:1208..2497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size770
Hectar predicted targeting categoryother localisation
Exons3
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.816802-UTR-P-wetherbeei_contig6122:1207..12131683186889.816802-UTR-P-wetherbeei_contig6122:1207..1213Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6122 1208..1213 +
1683186889.8359644-UTR-P-wetherbeei_contig6122:1639..17231683186889.8359644-UTR-P-wetherbeei_contig6122:1639..1723Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6122 1640..1723 +
1683186889.8461354-UTR-P-wetherbeei_contig6122:2016..21461683186889.8461354-UTR-P-wetherbeei_contig6122:2016..2146Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6122 2017..2146 +
1683186889.8569078-UTR-P-wetherbeei_contig6122:2373..24971683186889.8569078-UTR-P-wetherbeei_contig6122:2373..2497Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6122 2374..2497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.826552-CDS-P-wetherbeei_contig6122:1213..16391683186889.826552-CDS-P-wetherbeei_contig6122:1213..1639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6122 1214..1639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6122.2.1prot_P-wetherbeei_contig6122.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6122 1214..1639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6122.2.1

>prot_P-wetherbeei_contig6122.2.1 ID=prot_P-wetherbeei_contig6122.2.1|Name=mRNA_P-wetherbeei_contig6122.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MECCPYAELALGKVPRRCMGAHRVQERVRGCDNMLTSDNSLFFSPNAWVL
PWSSQESTKDLSVERKRECMAIKDKETGDMAYFNVIFVAFSTWKFRCLTI
SACGPYLHLPFIRQGIRRHHCSTSSTPFAMSTTKMCDTRRG*
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mRNA from alignment at P-wetherbeei_contig6122:1208..2497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6122.2.1 ID=mRNA_P-wetherbeei_contig6122.2.1|Name=mRNA_P-wetherbeei_contig6122.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig6122:1208..2497+ (Phaeothamnion wetherbeei SAG_119_79)
TTTTTGATGGAGTGTTGCCCCTACGCGGAGCTAGCTCTGGGCAAGGTGCC
GCGGCGCTGCATGGGAGCCCACAGAGTCCAGGAGCGGGTGCGTGGTTGTG
ATAATATGCTGACGAGCGACAATTCTTTGTTCTTTTCCCCCAATGCGTGG
GTTTTGCCCTGGTCAAGCCAAGAATCGACAAAAGATCTATCAGTAGAGCG
GAAACGTGAATGCATGGCGATCAAAGATAAGGAGACAGGCGACATGGCAT
ACTTTAATGTCATCTTTGTAGCTTTTTCCACGTGGAAATTCCGTTGTCTT
ACAATCAGCGCGTGTGGGCCGTACCTACATCTCCCTTTTATTCGTCAGGG
CATCCGGCGGCACCACTGTTCAACCTCGTCCACGCCCTTCGCGATGTCAA
CAACGAAAATGTGCGATACACGACGTGGATAACGGAGGCTTGGCGGGTTC
TGCAATGGAGCGAACCGGCCGCCAAGTTGTTTTGGGAGATGCTCTCGCTC
TTTCATGAGCAGACAGGTTAGTAGGCGGGGCCGACATGGAACCGCACGTA
CTGGAATGCGCAGTTTACTTGGCTGCCTTCGCATTATAACCGGCATCGGC
TGTTCTCTTAGTGTCGCCGTATCCTTCTCTTTATTCATACCTATTCAAAG
GTATCTGACTGAGGCTGTTTCATTTTCTTCAGGCGAAAGCGAGATCTGTA
ACTGGATCCACTTTCTCGGTGGCTTTCGCCATACGCACCCGTTTATTTAT
CGGTCTGGACATTGGACGCAACGTCCTGCCCGGCTGTATGTATCTCGCTT
CGCCTGCAGAGCGGGAGCGGCGAAGGAGCACGGGGGCGCCGGCGGCGGGA
CGGAGAGCGGCGCCGGCTGCGGAGCTGCCCATCTCGCGGCTCAGCCTCTT
TCTTTTCCTCCACCTGACGCCGGACTCGACGACGATAAAGCGAGTACATC
CCCCCAGCAGGAGTTAGAATGATGGGCAGGAATGAGCGAAATGCTTGCCG
CCATGTCTCTTACTTTCTTGCCGCGGGTCTATTGCCGCGAGACCGATAAG
CAACTGAAGACCCAGAAACTAAGGGCATTTGTTACTCCCGGAATGCTTCT
GTGAACCGCTCTTTGTGTCTGTTTCGGCACTGTGATCCTTCTGCTCTCTT
TTCTCTCTTCTGCCAGAGTGGGGTCGTCGCGGACCTTTATGGACGCGATG
TGGCCAACGGAGGAGGCCCCCGGTGCCAGCAGCCCCAAGCGGGCCGCGCA
CGCCGCGAGTCTCTCGCCGCATTCACCGAGCCGCCTGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6122:1208..2497+

>mRNA_P-wetherbeei_contig6122.2.1 ID=mRNA_P-wetherbeei_contig6122.2.1|Name=mRNA_P-wetherbeei_contig6122.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig6122:1208..2497+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTGTTGCCCCTACGCGGAGCTAGCTCTGGGCAAGGTGCCGCGGCG
CTGCATGGGAGCCCACAGAGTCCAGGAGCGGGTGCGTGGTTGTGATAATA
TGCTGACGAGCGACAATTCTTTGTTCTTTTCCCCCAATGCGTGGGTTTTG
CCCTGGTCAAGCCAAGAATCGACAAAAGATCTATCAGTAGAGCGGAAACG
TGAATGCATGGCGATCAAAGATAAGGAGACAGGCGACATGGCATACTTTA
ATGTCATCTTTGTAGCTTTTTCCACGTGGAAATTCCGTTGTCTTACAATC
AGCGCGTGTGGGCCGTACCTACATCTCCCTTTTATTCGTCAGGGCATCCG
GCGGCACCACTGTTCAACCTCGTCCACGCCCTTCGCGATGTCAACAACGA
AAATGTGCGATACACGACGTGGATAA
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