mRNA_P-wetherbeei_contig6111.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6111.2.1
Unique NamemRNA_P-wetherbeei_contig6111.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6111.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6111contigP-wetherbeei_contig6111:486..1720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size809
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003820.1
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.3092897-CDS-P-wetherbeei_contig6111:485..6521683186889.3092897-CDS-P-wetherbeei_contig6111:485..652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6111 486..652 +
1683186889.3193927-CDS-P-wetherbeei_contig6111:811..10061683186889.3193927-CDS-P-wetherbeei_contig6111:811..1006Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6111 812..1006 +
1683186889.3282917-CDS-P-wetherbeei_contig6111:1275..15401683186889.3282917-CDS-P-wetherbeei_contig6111:1275..1540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6111 1276..1540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.3400104-UTR-P-wetherbeei_contig6111:1540..17201683186889.3400104-UTR-P-wetherbeei_contig6111:1540..1720Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6111 1541..1720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6111.2.1prot_P-wetherbeei_contig6111.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6111 486..1540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6111.2.1

>prot_P-wetherbeei_contig6111.2.1 ID=prot_P-wetherbeei_contig6111.2.1|Name=mRNA_P-wetherbeei_contig6111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp
ARISAFSPLQALPCRGATRKERTLRFAKNLDDSEDEGPLPLFGAETGPRR
RDDVERLELLSTSTAADYEREWAEKERRRLWHGGNGSGGIAAADRDRAAA
EATLGSIVGLSLGAAALTCLLYISIGPTFIHGGPVHRGRTVQATAQPAGR
GGIGIKREAPSAVASVAAGQPVGGEEAFDSRDSFLFEKFPTVRYVARPGA
NPDSGRVL*
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mRNA from alignment at P-wetherbeei_contig6111:486..1720+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6111.2.1 ID=mRNA_P-wetherbeei_contig6111.2.1|Name=mRNA_P-wetherbeei_contig6111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1235bp|location=Sequence derived from alignment at P-wetherbeei_contig6111:486..1720+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAGGATCTCAGCCTTTTCGCCTCTGCAGGCGTTGCCCTGTCGAGGGGC
AACGAGGAAAGAGCGGACTTTGAGGTTTGCAAAAAACCTCGATGACTCGG
AAGATGAGGGGCCATTGCCGCTTTTTGGTGCTGAGACAGGACCACGACGA
CGAGACGATGTAGAGAGGTGAGAGGCAGACCACACACAAAAGTCATCTGC
CTTCAACGTTCTCAACGCCAGATCCCACTTTGGGCAATGTTAATACTTTC
CTCAGCTTTGAAGAAAGAGTAATTTGGTAAATTTCTATTTTCTCCCATGC
ATGGCGATGCGCGGATTACACCGCAGGCTGGAGCTGCTTTCAACTTCCAC
AGCAGCCGATTACGAGCGGGAATGGGCAGAAAAGGAGCGGCGTCGCCTGT
GGCATGGCGGCAACGGCAGTGGGGGCATTGCCGCCGCCGACCGGGATCGT
GCTGCTGCCGAGGCAACCCTTGGCAGTATTGTCGGGCTGTCGCTCGGGGC
CGCGGCGCTTACCTGCCTCCTGTGAGTCAGCACGCCATCTTGTGGAGCAT
ACATTTTTCGGGTGTCAGAGAAGGTTTTGCATTTGCTGGCTGGGTAACAT
AGTTGAGCCTTTCCAATATCACGCCATAGATCGACAGAAGTGGATTTTTC
GTGTCTGCGTTTACATAGGGCGGGCAGAACTCTTTGAAAGTTTCATCAAA
CTTCCATGTCAACGTTGCATTCCTTCCTCTCCTGCCGGGGATTCCGCTCC
AACTGTACTACTCTCCGCGGCGGAATGAACCAAACGGCAGGTACATTTCA
ATCGGGCCAACCTTTATCCACGGCGGCCCCGTGCACCGTGGCCGGACTGT
ACAGGCAACGGCACAGCCCGCCGGACGTGGCGGCATTGGCATCAAAAGAG
AGGCGCCTTCGGCGGTGGCGTCGGTTGCGGCAGGGCAGCCCGTAGGAGGA
GAAGAGGCGTTCGACAGCCGAGACAGCTTTCTTTTCGAGAAATTTCCAAC
GGTGCGGTATGTGGCGCGGCCCGGAGCAAACCCGGATTCGGGAAGGGTCC
TGTGAGGTGTGTATTGCTTGCATTTCCCGGTCTCCCTCTCCTGGGGAGCA
TCAGCTACGTCTTTAAGTCAGTATTCTACCTATTTTGCCAGCACTTTCGC
CGCGCTGTGGTGACAGGGTAAGACTGAAGTATTTCTTTTTGAAACCCACA
CAGTCTGTAAGAACATCGCATGTTCTGATAGTAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6111:486..1720+

>mRNA_P-wetherbeei_contig6111.2.1 ID=mRNA_P-wetherbeei_contig6111.2.1|Name=mRNA_P-wetherbeei_contig6111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig6111:486..1720+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAGGATCTCAGCCTTTTCGCCTCTGCAGGCGTTGCCCTGTCGAGGGGC
AACGAGGAAAGAGCGGACTTTGAGGTTTGCAAAAAACCTCGATGACTCGG
AAGATGAGGGGCCATTGCCGCTTTTTGGTGCTGAGACAGGACCACGACGA
CGAGACGATGTAGAGAGGCTGGAGCTGCTTTCAACTTCCACAGCAGCCGA
TTACGAGCGGGAATGGGCAGAAAAGGAGCGGCGTCGCCTGTGGCATGGCG
GCAACGGCAGTGGGGGCATTGCCGCCGCCGACCGGGATCGTGCTGCTGCC
GAGGCAACCCTTGGCAGTATTGTCGGGCTGTCGCTCGGGGCCGCGGCGCT
TACCTGCCTCCTGTACATTTCAATCGGGCCAACCTTTATCCACGGCGGCC
CCGTGCACCGTGGCCGGACTGTACAGGCAACGGCACAGCCCGCCGGACGT
GGCGGCATTGGCATCAAAAGAGAGGCGCCTTCGGCGGTGGCGTCGGTTGC
GGCAGGGCAGCCCGTAGGAGGAGAAGAGGCGTTCGACAGCCGAGACAGCT
TTCTTTTCGAGAAATTTCCAACGGTGCGGTATGTGGCGCGGCCCGGAGCA
AACCCGGATTCGGGAAGGGTCCTGTGA
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