mRNA_P-wetherbeei_contig611.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig611.1.3
Unique NamemRNA_P-wetherbeei_contig611.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig611.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig611contigP-wetherbeei_contig611:5561..8013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1683
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004830.1
Cds size1392
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig611.1.3prot_P-wetherbeei_contig611.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig611 5608..7769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.2245045-UTR-P-wetherbeei_contig611:5560..56071683186889.2245045-UTR-P-wetherbeei_contig611:5560..5607Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig611 5561..5607 +
1683186889.2839794-UTR-P-wetherbeei_contig611:7769..80131683186889.2839794-UTR-P-wetherbeei_contig611:7769..8013Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig611 7770..8013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.2333765-CDS-P-wetherbeei_contig611:5607..56251683186889.2333765-CDS-P-wetherbeei_contig611:5607..5625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig611 5608..5625 +
1683186889.241861-CDS-P-wetherbeei_contig611:5730..59891683186889.241861-CDS-P-wetherbeei_contig611:5730..5989Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig611 5731..5989 +
1683186889.2501516-CDS-P-wetherbeei_contig611:6135..63261683186889.2501516-CDS-P-wetherbeei_contig611:6135..6326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig611 6136..6326 +
1683186889.2646966-CDS-P-wetherbeei_contig611:6582..69661683186889.2646966-CDS-P-wetherbeei_contig611:6582..6966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig611 6583..6966 +
1683186889.273581-CDS-P-wetherbeei_contig611:7229..77691683186889.273581-CDS-P-wetherbeei_contig611:7229..7769Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig611 7230..7769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig611.1.3

>prot_P-wetherbeei_contig611.1.3 ID=prot_P-wetherbeei_contig611.1.3|Name=mRNA_P-wetherbeei_contig611.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=464bp
MESSSTLESLQRAVCENPLSAQSIEASRAAVKKLSKEEKAALRKSLPQPV
PAPRPAKRRRQEEPKAVIQKIQKCTIMDIPFAEEFWEMLGAFGDSRGHFG
CTCGFGGRVRCPCLRPVEVLEAAVRPFIREVIQDAKMEANSDTFGTKHLQ
AIMPQEMCEYMRWRKDRDQTRDKSSAEDIVKAGIKGGSGGDGGDGNPVAG
TAVGAAAAAAGAVRAGAATLKEKAAAAAGAAAVPTADDEAPRIIDAAAAA
AAEEEAGNEHDIHEDEIEEIISGMSSSRRALLRRQFADERSRGLSVEAYA
EFRKRREAFFLGRRRGRVGDTADTFRLWAGRRAKGGEDGCKLTAATLQAL
AFLAHDRVGMIVEDAIRYRCDGVLRELPRRQPLSAAELEAAAERVRLTAD
AGAGGGGRDPFAAVGAVIGPPEARRGLQFRGDPLAWPRNVLEDGAALDDV
AKAADDLVAQLGF*
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mRNA from alignment at P-wetherbeei_contig611:5561..8013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig611.1.3 ID=mRNA_P-wetherbeei_contig611.1.3|Name=mRNA_P-wetherbeei_contig611.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2453bp|location=Sequence derived from alignment at P-wetherbeei_contig611:5561..8013+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCCAGAGGGAGAGCGGAAAGCGCATTGCGAAAACCCTAGCAAAGATG
GAGAGCTCGAGTACGGTAAGCCGTCCACCATTAGAACGCTCCCAGGCTAG
AATTCGGCGTCGTCGTTTCCCATTTCTCTTCTTACCTTTTTTCCCTCGCC
CCCTCTCCTTTCCCTCTCAGCTGGAGAGCCTGCAGCGCGCGGTGTGCGAA
AACCCGCTTTCGGCACAGTCCATCGAGGCCAGCCGGGCCGCAGTGAAGAA
GCTCTCGAAGGAGGAGAAAGCGGCCCTTCGCAAAAGCCTCCCGCAACCCG
TGCCGGCGCCGCGGCCGGCGAAGCGGCGGCGCCAAGAAGAGCCCAAGGCT
GTCATCCAGAAGATCCAAAAGTGTACCATCATGGACATTCCTTTCGCCGA
AGAGTTTTGGGAAATGCTGGGCGCCTTTGGTGAGTCAAAAGCTCTTCTCG
TTTGCCGTGCAACAGCTCCTCCTTTTCTTGAAGTTCAGAACGAGCTCCGC
GCCGCGCTCCGCACAGCCTCATCTCCTGTCCTTGCCGAAAATCGTCGCAA
TGCCCTTTGTTGCTGCTCCCGGCAGGCGACAGCCGAGGGCACTTTGGGTG
CACCTGCGGCTTCGGCGGCCGCGTCCGCTGCCCGTGCTTGCGGCCGGTCG
AGGTGCTCGAGGCGGCGGTGCGGCCCTTCATCCGGGAGGTCATCCAGGAC
GCGAAGATGGAGGCGAACAGCGATACCTTTGGCACGAAGCACCTTCAGGC
CATCATGCCACAAGAGGTGTTTGTTTGTCGTCTTCCGTCTGTCCCCGTCG
CTCTCCGAAACAGCGTGTTTTATTTCTATCGGCGCGTGGCCGTTTCTACT
CCGGTCCTTTGAGGGACTGGCACACCCGCGGGAGGTGGTGATGATGGATA
CCTGCGTCTCGACTCAAGAGGAGTTCTGCCTCGTTTTTCATTGCGGGCTT
CCTCCCCAACCTCCTCCTCTGAGATTGTCCGCGTATTGGTGTGCTCGTCG
CGCGGCCTCGTAAACGCGGCAGATGTGCGAGTACATGCGCTGGAGGAAGG
ACCGGGACCAGACAAGGGACAAGAGCAGTGCCGAAGACATTGTCAAGGCC
GGCATCAAGGGCGGCAGCGGCGGCGACGGCGGCGATGGCAACCCGGTGGC
GGGAACGGCGGTGGGGGCGGCGGCGGCTGCGGCAGGGGCTGTGCGGGCAG
GGGCGGCGACGCTGAAGGAGAAAGCGGCGGCGGCGGCGGGGGCGGCAGCT
GTGCCGACGGCAGACGATGAGGCACCGCGGATCATTGACGCCGCTGCGGC
GGCGGCGGCCGAGGAGGAAGCCGGCAACGAGCACGACATTCATGAAGATG
AGATCGAAGAGATCATCAGCGGCATGAGCAGCAGCCGGCGCGCCCTCTTG
CGCCGGGTGCGTTGCTGTTCCGCTGGCGGGGTCGGGCTTATGTATTCCGT
TGGGTTTTCGGACCCCCCTTACAGAATCTTGTCGGCAAGAGCTAGCCTCC
ACTCGTGTCTGAAAGCGTTTTTTTCCATTGCCACTCCGGGAGCCCTTTCC
ATCCACCATGCTTCTTTCAACGTGGAGCTTGAACTCAGAAACGCCCTTTC
TCTACCTCGTCAACCTCGTCTCATGTGCTCGCGGTCCGTTCAAGTCGTCT
CCCACCGCCTTTGCCGCAGCAATTCGCGGACGAGCGCTCCCGCGGCCTAT
CGGTAGAGGCATACGCCGAGTTCCGTAAGCGGCGCGAGGCCTTCTTCCTG
GGCCGCCGCCGTGGAAGGGTCGGTGACACGGCCGACACGTTCCGGCTGTG
GGCGGGCCGCCGGGCCAAGGGCGGCGAAGACGGCTGCAAGCTGACGGCCG
CGACGCTGCAGGCGCTCGCGTTCCTTGCGCATGACCGGGTCGGAATGATT
GTGGAAGACGCTATCCGCTACCGCTGCGACGGCGTGCTGCGCGAGCTGCC
GCGCCGCCAACCGCTGTCCGCTGCCGAGCTCGAGGCGGCTGCCGAGCGGG
TCCGGCTGACGGCCGACGCCGGCGCCGGCGGCGGCGGCCGCGACCCGTTC
GCCGCGGTCGGCGCGGTGATTGGACCGCCCGAGGCGCGCCGGGGCTTGCA
GTTCCGGGGGGACCCCCTTGCGTGGCCACGCAACGTGCTGGAGGACGGGG
CGGCGCTCGATGACGTGGCGAAGGCGGCGGATGACCTCGTCGCCCAACTC
GGCTTCTGATTATGCTGCACCGGCGAGGGTGTGGAAATGTGTTGGGGGTA
GTGGAAATGGCGTGCGCGCAAGTCTCCAATGGGGGCGAGGAAACCAGAAA
CAGGTCCGCGTCCGCGGTCGACTCAAGCGCGCTGAGGGAGATTTGGAGAG
GGAAAGGCAGGGTTATCCATTGCGTGCAAACTGGTAGGCCACGTGAGGTC
ATGTACAGAAAGAGGAGGGACCTGCATACAACTTCAATTCTTTCGGTCGG
TTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig611:5561..8013+

>mRNA_P-wetherbeei_contig611.1.3 ID=mRNA_P-wetherbeei_contig611.1.3|Name=mRNA_P-wetherbeei_contig611.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1392bp|location=Sequence derived from alignment at P-wetherbeei_contig611:5561..8013+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAGCTCGAGTACGCTGGAGAGCCTGCAGCGCGCGGTGTGCGAAAA
CCCGCTTTCGGCACAGTCCATCGAGGCCAGCCGGGCCGCAGTGAAGAAGC
TCTCGAAGGAGGAGAAAGCGGCCCTTCGCAAAAGCCTCCCGCAACCCGTG
CCGGCGCCGCGGCCGGCGAAGCGGCGGCGCCAAGAAGAGCCCAAGGCTGT
CATCCAGAAGATCCAAAAGTGTACCATCATGGACATTCCTTTCGCCGAAG
AGTTTTGGGAAATGCTGGGCGCCTTTGGCGACAGCCGAGGGCACTTTGGG
TGCACCTGCGGCTTCGGCGGCCGCGTCCGCTGCCCGTGCTTGCGGCCGGT
CGAGGTGCTCGAGGCGGCGGTGCGGCCCTTCATCCGGGAGGTCATCCAGG
ACGCGAAGATGGAGGCGAACAGCGATACCTTTGGCACGAAGCACCTTCAG
GCCATCATGCCACAAGAGATGTGCGAGTACATGCGCTGGAGGAAGGACCG
GGACCAGACAAGGGACAAGAGCAGTGCCGAAGACATTGTCAAGGCCGGCA
TCAAGGGCGGCAGCGGCGGCGACGGCGGCGATGGCAACCCGGTGGCGGGA
ACGGCGGTGGGGGCGGCGGCGGCTGCGGCAGGGGCTGTGCGGGCAGGGGC
GGCGACGCTGAAGGAGAAAGCGGCGGCGGCGGCGGGGGCGGCAGCTGTGC
CGACGGCAGACGATGAGGCACCGCGGATCATTGACGCCGCTGCGGCGGCG
GCGGCCGAGGAGGAAGCCGGCAACGAGCACGACATTCATGAAGATGAGAT
CGAAGAGATCATCAGCGGCATGAGCAGCAGCCGGCGCGCCCTCTTGCGCC
GGCAATTCGCGGACGAGCGCTCCCGCGGCCTATCGGTAGAGGCATACGCC
GAGTTCCGTAAGCGGCGCGAGGCCTTCTTCCTGGGCCGCCGCCGTGGAAG
GGTCGGTGACACGGCCGACACGTTCCGGCTGTGGGCGGGCCGCCGGGCCA
AGGGCGGCGAAGACGGCTGCAAGCTGACGGCCGCGACGCTGCAGGCGCTC
GCGTTCCTTGCGCATGACCGGGTCGGAATGATTGTGGAAGACGCTATCCG
CTACCGCTGCGACGGCGTGCTGCGCGAGCTGCCGCGCCGCCAACCGCTGT
CCGCTGCCGAGCTCGAGGCGGCTGCCGAGCGGGTCCGGCTGACGGCCGAC
GCCGGCGCCGGCGGCGGCGGCCGCGACCCGTTCGCCGCGGTCGGCGCGGT
GATTGGACCGCCCGAGGCGCGCCGGGGCTTGCAGTTCCGGGGGGACCCCC
TTGCGTGGCCACGCAACGTGCTGGAGGACGGGGCGGCGCTCGATGACGTG
GCGAAGGCGGCGGATGACCTCGTCGCCCAACTCGGCTTCTGA
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