mRNA_P-wetherbeei_contig6105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI) HSP 1 Score: 365 bits (936), Expect = 9.280e-119 Identity = 196/424 (46.23%), Postives = 247/424 (58.25%), Query Frame = 3
Query: 63 TDDDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPPRAVRRDDLTGADTEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDADANGXXXXXXXXGVSRSLCDGSGCGDRTGEVAAGCKGFRREERTAMRLAAPEMGHQPSTAAMAITATARKGDELDVTVALEGSAVTAAAVTAATAALGGGKEALTEEALACDSFWDPGAVTPPFLYPPPRERRIGCGCEYCPAACAAGGGPGGLDEDDLRMSVFGSFNAALVGLWYATVASACVALAWW 1334
T D G C F Q+CFQ G+DT CT A ++A FPMD++HGFGV H+ VWDGS +P TGLC G PD GRC + F PKGL VAP++CP+++D+GCC+WQ N++LY+NLG LV++FGS+TGCLACAVNLV FWCALVCSP QG FA++HDPP RRDDLTG + VLQ D+ VD + C IYESC+ A+VGE TAMQS LGLLKFQ+QTGAVGHG++FF S + A+ S CG++ V+ G + + A E P AA A TA++ ++ + LACDSF+DPG+ T PF YPP RE I C C+YC AC+ GG D + V F LVG YA V + +AL WW
Sbjct: 36 TVDAGQCAFTQECFQFGLDTDCTPIP-AEGDTAVSFPMDSSHGFGVFHDKVWDGSVENPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQRRDDLTGGSSRVLQLDVNVDGDMACRIYESCKSIAVVGETTAMQSGLGLLKFQLQTGAVGHGEFFFPSFETNASAE--------------------SPCGNKRLPVSGG-----------LDVRATERKDDPQAAASAPTASSESSS-------------------------------MSFDTLACDSFFDPGSSTIPFAYPPKREDIISCTCDYCVQACSGGGSIDVDVSDKNPIPVLDGFGVGLVGGVYAAVVACSLALFWW 396
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A835YTW9_9STRA (NPC1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW9_9STRA) HSP 1 Score: 304 bits (778), Expect = 9.700e-96 Identity = 138/227 (60.79%), Postives = 172/227 (75.77%), Query Frame = 3
Query: 69 DDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPPRAVRRDDLTGA-DTEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLS 746
D CTF QDCFQ GVDTACT R Y ES+ PFPM+AAHGF V H+ +WDGS D +GLCA G PD GRC ++ L+ VAP+MCP++ AGCCTWQ N++L++NL TLV +FG +TGCLACA NLV WCALVCSP+QG + T+HDPPRA+ DDLTGA VLQ D+++DA CA++ESC TAI G +TAMQSA+GLL+FQ+QTGA+GHG+YF+L+
Sbjct: 7 DQNQCTFTQDCFQNGVDTACTPREYTDRESSAPFPMNAAHGFNVAHDTIWDGSMADASSGLCARGRPDVQGRCIQSWDA--SLAAVAPIMCPQYAGAGCCTWQQNYALFQNLRTLVDSFGGATGCLACAANLVNLWCALVCSPQQGSYVTLHDPPRALMDDDLTGAAQLPVLQADVVLDADYACAVFESCSATAIAGASTAMQSAVGLLQFQLQTGAIGHGEYFYLA 231
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A6H5KYY4_9PHAE (NPC1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY4_9PHAE) HSP 1 Score: 221 bits (562), Expect = 3.850e-64 Identity = 98/157 (62.42%), Postives = 121/157 (77.07%), Query Frame = 3
Query: 63 TDDDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPP 533
T D G C F Q+CFQ G+DT CT A ++A FPMD++HGFGV H+ VWDGS DP TGLC G PD GRC + F PKGL VAP++CP+++D+GCC+WQ N++LY+NLG LV++FGS+TGCLACAVNLV FWCALVCSP QG FA++HDPP
Sbjct: 151 TVDAGQCAFTQECFQFGLDTDCTPIP-AEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIICPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPP 306
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: K3X0G1_GLOUD (NPC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0G1_GLOUD) HSP 1 Score: 144 bits (363), Expect = 6.800e-35 Identity = 90/249 (36.14%), Postives = 123/249 (49.40%), Query Frame = 3
Query: 72 DGVCTFRQDCFQTG----VDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTG--CLACAVNLVRFWCALVCSPRQGHFATVHDPPRAV--RRDDLTGADT-EVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFL------STTNASDADA 773
D C Q C G D AC +A A P PM A V G G C +G C + + CP+++DA CC+WQ N ++ N L TF ++ G C ACAVNL+ WC L+CSP Q F +H P ++ R D +TG + +VL+ D+ +D CA+Y+SC+ TAI A M+S+LG L +QMQTGA+GHG+Y L +TT A+ ADA
Sbjct: 27 DAKCAMTQTCVNPGNVPDYD-ACIPEAHAV--PADPQPMRGASWANVTGGGACKGDSDCNSKGSCTNGA----CACLNDGIVAGAHCELFAIQCPEYKDAACCSWQQNQAMAENFKVLANTFANNDGGGCDACAVNLLNLWCGLMCSPHQADFMRMHLPFPSINHRLDPMTGEENVKVLEMDVTLDKPFTCALYDSCKNTAIASVAEGMKSSLGFLNYQMQTGAIGHGEYMLLHFTSANTTTKATSADA 268
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A8K1CL61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL61_PYTOL) HSP 1 Score: 142 bits (358), Expect = 2.660e-34 Identity = 79/214 (36.92%), Postives = 112/214 (52.34%), Query Frame = 3
Query: 159 ATPFPMDAAHGFGVPHNVVWDGSYVDPDT----GLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSST--GCLACAVNLVRFWCALVCSPRQGHFATVH--DPPRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDADA 773
A P P+D G V G D G C G CQ+ T + CP+++DA CC+WQ N +L +N + FG ++ GC ACA NL+ WC ++CSPRQ F +H P + R D +TG D +VL+ D+ + CA+++SC+ TAI + AM+S+LG L +QMQTGA+GHG+Y L S+A A
Sbjct: 50 ANPMPVDPKPMTGAGWANVTGGGACTTDKECNKGACVRGN----CVCQVDGMTAGAHCDDFAIQCPEYKDAACCSWQQNQALAQNFKLVTTIFGKNSVGGCDACATNLLELWCGMICSPRQSEFMKMHLPYPSNSYRPDPMTGKDHVKVLEMDVTLAKDFTCAVFDSCKNTAIASVSEAMKSSLGFLNYQMQTGAIGHGEYMHLHFNATSNATA 259
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A2D4C7W7_PYTIN (NPC1_N domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7W7_PYTIN) HSP 1 Score: 139 bits (350), Expect = 2.100e-33 Identity = 83/213 (38.97%), Postives = 116/213 (54.46%), Query Frame = 3
Query: 165 PFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVA-----PLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTG--CLACAVNLVRFWCALVCSPRQGHFATVHDPPRAV--RRDDLTGADT-EVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDADA 773
P P G G NV G+ V D G E RC+ P + GL+ A + CP+ +DA CCTWQ N + +N L FG + G C ACA NL++ WC LVCSPRQ F +H P ++ R+D +T D +VL+ D+ + CA+++SC+ TAI + AM+S+LG L +Q QTGA+GHG+Y +L S+A A
Sbjct: 25 PVPPQPMQGPGWA-NVTGGGACVTDDDCGHKKGKCVEK-RCECPQD---GLTAGAHCDAYAIQCPEHKDAACCTWQQNEGIAQNFKLLASVFGQNDGGGCDACAANLMQLWCGLVCSPRQDEFMKMHLPYPSINHRKDPMTDKDNVKVLELDVTLSKSFTCALFDSCKNTAIASVSEAMKSSLGFLNYQAQTGAIGHGEYMYLHFNATSNATA 232
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: H3H0H3_PHYRM (NPC1_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0H3_PHYRM) HSP 1 Score: 127 bits (319), Expect = 1.210e-29 Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = 3
Query: 333 LMCPKFQDAGCCTWQANWSLYRNLGTLVQTFG--SSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPPRAV--RRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDA 767
+ CP ++D CC+WQ N ++ N + F S+ GC ACA NL+ WC LVCSP Q F + P + R D +TG + +VL+ D+ +D CA+++SC+ TA+ A AM+S+LG L +QMQ GAVGHG+Y L + DA
Sbjct: 104 IQCPAYKDDACCSWQQNQAMAENFKLVASVFAKNSAGGCDACAANLMNLWCGLVCSPEQDQFMQMAHPWPSTNYRPDPMTGKEKVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEYISLKFNASKDA 253
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A662XWU5_9STRA (NPC1_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWU5_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.650e-29 Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = 3
Query: 333 LMCPKFQDAGCCTWQANWSLYRNLGTLVQTFG--SSTGCLACAVNLVRFWCALVCSPRQGHFATVHDP--PRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDA 767
+ CP ++D CC+WQ N ++ N + F S+ GC ACA NL+ WC LVCSP Q F + P R D +TG + +VL+ D+ +D CA+++SC+ TA+ A AM+S+LG L +QMQ GAVGHG++ L+ ++DA
Sbjct: 12 IQCPAYKDDACCSWQQNRAMAENFQLVASVFARNSAGGCDACAANLMNLWCGLVCSPAQDQFMQLAHPWPSTTYRPDPMTGKERVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEFITLAFNASADA 161
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A5D6YG03_9STRA (NPC1_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YG03_9STRA) HSP 1 Score: 127 bits (319), Expect = 7.350e-29 Identity = 77/237 (32.49%), Postives = 111/237 (46.84%), Query Frame = 3
Query: 81 CTFRQDCFQTGVDT---ACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTG--CLACAVNLVRFWCALVCSPRQGHFATVH--DPPRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDA 767
C Q C G + AC + E P PM V D G C GT C+ + + CP+++DA CC+WQ N + N + FG ++G C ACA N++ WC L CSPRQ F + P + R D +TG + +VL+ + +D C +++SCR TAI + AM+S+LG L +Q+QTGAVGHGQ+ L + + A
Sbjct: 22 CAMTQTCVNPGNEPDFDACIPEAH--REPVDPQPMVGPQWANVTGGGACTTDADCSDKGECVRGT----CACRDEGMVAGAHCELFAIQCPEYKDAACCSWQQNQGMAENFKLVASVFGKNSGGGCDACAANVLSLWCGLTCSPRQHEFLQMRLPFPSTSYRPDPMTGEERVKVLELAVTLDKAFTCRLFDSCRNTAIASMSEAMKSSLGFLNYQVQTGAVGHGQFISLRFADGAQA 252
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A067D0Z9_SAPPC (NPC1_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D0Z9_SAPPC) HSP 1 Score: 126 bits (316), Expect = 1.630e-28 Identity = 83/230 (36.09%), Postives = 114/230 (49.57%), Query Frame = 3
Query: 81 CTFRQDCFQTG----VDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGT-PDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFG--SSTGCLACAVNLVRFWCALVCSPRQGHFATVH--DPPRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFF 740
C QDC G D AC + A+ A P PM G V G DT C GT + C+ T + CP+++ + CC+WQ N +L N + FG S+ GC ACA N++R WC LVC+P Q F +H P R D +TG D +VL+ D+ + CA+++SC+ TAI + A +S+LG L +Q QTGAVGHG+Y F
Sbjct: 23 CVMTQDCVNPGNIPDYD-ACIPKALAS--VAPPMPMR-----GDGWATVTGGGTCKADTD-CHQGTCVKKACVCRNDGVTAGAHCDDFAIQCPEYESSACCSWQQNRALADNFKLIATMFGRNSAGGCDACAANMMRMWCGLVCAPNQADFMKMHLPYPSNNYRLDSMTGKDHVKVLEMDVNLAKPFTCALFDSCKHTAIASMSDAFKSSLGFLNYQGQTGAVGHGEYLF 243 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6105.1.1 >prot_P-wetherbeei_contig6105.1.1 ID=prot_P-wetherbeei_contig6105.1.1|Name=mRNA_P-wetherbeei_contig6105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=445bp MMASAPHGVDTDDDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDAback to top mRNA from alignment at P-wetherbeei_contig6105:418..3137- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6105.1.1 ID=mRNA_P-wetherbeei_contig6105.1.1|Name=mRNA_P-wetherbeei_contig6105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2720bp|location=Sequence derived from alignment at P-wetherbeei_contig6105:418..3137- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6105:418..3137- >mRNA_P-wetherbeei_contig6105.1.1 ID=mRNA_P-wetherbeei_contig6105.1.1|Name=mRNA_P-wetherbeei_contig6105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig6105:418..3137- (Phaeothamnion wetherbeei SAG_119_79)back to top |