mRNA_P-wetherbeei_contig6093.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6093.1.1
Unique NamemRNA_P-wetherbeei_contig6093.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6093contigP-wetherbeei_contig6093:2537..3397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons2
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.1786437-UTR-P-wetherbeei_contig6093:2536..25601683186888.1786437-UTR-P-wetherbeei_contig6093:2536..2560Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6093 2537..2560 +
1683186888.2041278-UTR-P-wetherbeei_contig6093:3385..33971683186888.2041278-UTR-P-wetherbeei_contig6093:3385..3397Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6093 3386..3397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.1875591-CDS-P-wetherbeei_contig6093:2560..29231683186888.1875591-CDS-P-wetherbeei_contig6093:2560..2923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6093 2561..2923 +
1683186888.1961367-CDS-P-wetherbeei_contig6093:3205..33851683186888.1961367-CDS-P-wetherbeei_contig6093:3205..3385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6093 3206..3385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6093.1.1prot_P-wetherbeei_contig6093.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6093 2561..3385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6093.1.1

>prot_P-wetherbeei_contig6093.1.1 ID=prot_P-wetherbeei_contig6093.1.1|Name=mRNA_P-wetherbeei_contig6093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MQDVEINQLQPSPAGGGPAGGGPAGGGPAAAASLAPSPSPPPPTGLGAPA
GGVPMKVDANMPAGLDANKVALLTEMQQVAELCIDWMLAAARAAAKKSVE
KARPGPGVKKRGKDQEEDVTVVKPLIWPEELYRMVQEYILPSATETAELA
MWLASSFTPCLRALLVSLRSLTGPPWRPFA*
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mRNA from alignment at P-wetherbeei_contig6093:2537..3397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6093.1.1 ID=mRNA_P-wetherbeei_contig6093.1.1|Name=mRNA_P-wetherbeei_contig6093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig6093:2537..3397+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCAGCGGCGCCGTGCCGATGCAGGACGTGGAGATCAACCAGCT
ACAGCCGTCGCCAGCGGGCGGCGGGCCGGCGGGCGGCGGGCCGGCGGGCG
GCGGGCCCGCAGCCGCAGCAAGCTTGGCCCCGTCGCCGTCGCCGCCTCCG
CCGACCGGTTTGGGCGCACCCGCAGGCGGCGTGCCGATGAAGGTGGACGC
TAATATGCCGGCGGGACTGGACGCCAACAAAGTTGCCCTGCTGACGGAGA
TGCAGCAGGTGGCCGAGCTTTGCATCGACTGGATGCTTGCGGCAGCACGA
GCCGCCGCGAAGAAGAGCGTGGAAAAGGCTCGACCGGGGCCCGGCGTCAA
GAAGCGCGGCAAGGACCAGGAGGAGGACGTCACCGTGGTGAGCTTTTCTT
CTTTGTAGTGACTGATTTGTTGCTGCCTCTTCTTGTAATGGGTTGCCGTG
CTTGCTTCCGTGGCGGTTCTGTCATTTTGCTCTTCCTGTGTTGGAGCGAA
CGTCTCATACCTCCTGCCTATGTTTCTTGCCGCGCTTGTCGTGGAAAGCT
TTTCTCATTCTGACCGTTCTAAGCCGCCTTGCTTGAGCTCTCCGCAACTG
ACGAGGCAAACCGCTTGCCCGCGGTCATTCCTTCGCGCCTTGCACCTCTG
TTCCCGCCGCCACCACCAGGTGAAGCCGCTGATCTGGCCTGAGGAACTGT
ACCGGATGGTGCAGGAGTACATCCTGCCGTCAGCGACGGAGACTGCGGAG
CTGGCGATGTGGCTCGCTTCGTCATTTACGCCGTGCTTGCGCGCGCTGCT
GGTTTCTTTGCGCAGCTTAACGGGCCCGCCATGGCGGCCTTTCGCCTGAT
CCCGCTGCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6093:2537..3397+

>mRNA_P-wetherbeei_contig6093.1.1 ID=mRNA_P-wetherbeei_contig6093.1.1|Name=mRNA_P-wetherbeei_contig6093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig6093:2537..3397+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGACGTGGAGATCAACCAGCTACAGCCGTCGCCAGCGGGCGGCGG
GCCGGCGGGCGGCGGGCCGGCGGGCGGCGGGCCCGCAGCCGCAGCAAGCT
TGGCCCCGTCGCCGTCGCCGCCTCCGCCGACCGGTTTGGGCGCACCCGCA
GGCGGCGTGCCGATGAAGGTGGACGCTAATATGCCGGCGGGACTGGACGC
CAACAAAGTTGCCCTGCTGACGGAGATGCAGCAGGTGGCCGAGCTTTGCA
TCGACTGGATGCTTGCGGCAGCACGAGCCGCCGCGAAGAAGAGCGTGGAA
AAGGCTCGACCGGGGCCCGGCGTCAAGAAGCGCGGCAAGGACCAGGAGGA
GGACGTCACCGTGGTGAAGCCGCTGATCTGGCCTGAGGAACTGTACCGGA
TGGTGCAGGAGTACATCCTGCCGTCAGCGACGGAGACTGCGGAGCTGGCG
ATGTGGCTCGCTTCGTCATTTACGCCGTGCTTGCGCGCGCTGCTGGTTTC
TTTGCGCAGCTTAACGGGCCCGCCATGGCGGCCTTTCGCCTGA
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