mRNA_P-wetherbeei_contig6088.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6088.1.1
Unique NamemRNA_P-wetherbeei_contig6088.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6088.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6088contigP-wetherbeei_contig6088:1076..2127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size864
Hectar predicted targeting categoryother localisation
Exons2
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.908912-CDS-P-wetherbeei_contig6088:1075..12911683186887.908912-CDS-P-wetherbeei_contig6088:1075..1291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6088 1076..1291 -
1683186887.917688-CDS-P-wetherbeei_contig6088:1480..18101683186887.917688-CDS-P-wetherbeei_contig6088:1480..1810Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6088 1481..1810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.925543-UTR-P-wetherbeei_contig6088:1810..21271683186887.925543-UTR-P-wetherbeei_contig6088:1810..2127Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6088 1811..2127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6088.1.1prot_P-wetherbeei_contig6088.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6088 1076..1810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6088.1.1

>prot_P-wetherbeei_contig6088.1.1 ID=prot_P-wetherbeei_contig6088.1.1|Name=mRNA_P-wetherbeei_contig6088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MGVERADKIPKIPPGENNELEEMVIREGIILKQSRGTLGLGRLKRRRLVL
TNVALRWARSGQPGQIFDLANLIARSGSALRSITNVRCWDRRRSASVPNE
SPPPAGARFEVTTSDGISRVWIAPSPETAVEWVEAIRAAIAEAPEWPPGG
LALGLCGGGRGSSSGPTGSSASSISSVSRSRS
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mRNA from alignment at P-wetherbeei_contig6088:1076..2127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6088.1.1 ID=mRNA_P-wetherbeei_contig6088.1.1|Name=mRNA_P-wetherbeei_contig6088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1052bp|location=Sequence derived from alignment at P-wetherbeei_contig6088:1076..2127- (Phaeothamnion wetherbeei SAG_119_79)
TTTTAAAAACGTTTTTCGCCGTTCGAAAGCCACCATAAATCGTCATGCGC
GCTTTAAGGATGGGGATGGGCGCTCAAGAGGTACCTACCACCCACGAGCG
TTTTCCGGACGTTTCACGCGAACAGAATTGGAGGGAGAGGAAATAAGGCG
AGACGACGCATAGAAAGAAGAGACAAAGGCGTTCCGCAAGAATCAGTGGT
TCTACGATCACGCATAGAACCGACATGGGCGTGGAAAACTAAGGCGAGGC
GTCGCACGGAAAGGAGCAGAAGGACTTTTGCTCGAGCAGCAGGGGAGTTG
CAAACCACGACATTAACATGGGTGTGGAGAGAGCGGACAAAATTCCCAAA
ATACCTCCGGGGGAAAACAACGAGCTCGAGGAGATGGTGATCCGCGAGGG
CATAATATTGAAGCAATCTCGCGGCACTCTTGGCCTCGGACGACTGAAAA
GAAGGCGGCTGGTTTTGACAAATGTCGCGCTCCGATGGGCGCGGTCAGGG
CAGCCTGGACAGATTTTTGATCTCGCCAACCTCATAGCCCGCTCAGGAAG
CGCACTACGCTCGATAACAAATGTCCGCTGCTGGGACCGGCGACGCTCGG
CCAGCGTTCCTAATGAATCGCCGCCACCAGCGGGAGCACGCTTCGAGGTG
AGCGAAAATTATGTCCATTAGGGCCTTGGTGTATGTTGCTGCTTTGCAAA
GCCGCTCCTCGACACTTTACAGCTTCCCGTTTCGCAGCATGTGGTTCGCA
TTATTGTACGTGCAACGCATTTTTCGCCGCCGCCCTGTAGTTCATTTGCT
CTTTATCTTTCTGCCCCTTTCGCTCTCCTCGTCCAGGTGACAACATCTGA
CGGAATATCTCGCGTCTGGATCGCCCCCAGCCCGGAGACCGCCGTGGAGT
GGGTGGAAGCCATCCGCGCCGCCATCGCCGAGGCCCCCGAATGGCCGCCA
GGCGGGCTGGCGTTGGGGCTCTGCGGCGGCGGTCGCGGCAGCAGCAGTGG
CCCTACTGGTTCCTCCGCCTCTTCCATCTCATCCGTGTCCCGCTCGCGGT
CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6088:1076..2127-

>mRNA_P-wetherbeei_contig6088.1.1 ID=mRNA_P-wetherbeei_contig6088.1.1|Name=mRNA_P-wetherbeei_contig6088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig6088:1076..2127- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGTGGAGAGAGCGGACAAAATTCCCAAAATACCTCCGGGGGAAAA
CAACGAGCTCGAGGAGATGGTGATCCGCGAGGGCATAATATTGAAGCAAT
CTCGCGGCACTCTTGGCCTCGGACGACTGAAAAGAAGGCGGCTGGTTTTG
ACAAATGTCGCGCTCCGATGGGCGCGGTCAGGGCAGCCTGGACAGATTTT
TGATCTCGCCAACCTCATAGCCCGCTCAGGAAGCGCACTACGCTCGATAA
CAAATGTCCGCTGCTGGGACCGGCGACGCTCGGCCAGCGTTCCTAATGAA
TCGCCGCCACCAGCGGGAGCACGCTTCGAGGTGACAACATCTGACGGAAT
ATCTCGCGTCTGGATCGCCCCCAGCCCGGAGACCGCCGTGGAGTGGGTGG
AAGCCATCCGCGCCGCCATCGCCGAGGCCCCCGAATGGCCGCCAGGCGGG
CTGGCGTTGGGGCTCTGCGGCGGCGGTCGCGGCAGCAGCAGTGGCCCTAC
TGGTTCCTCCGCCTCTTCCATCTCATCCGTGTCCCGCTCGCGGTCG
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