mRNA_P-wetherbeei_contig6074.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6074.2.1
Unique NamemRNA_P-wetherbeei_contig6074.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A835Z1Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.080e-23
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   55 KGGKKGADEEDADAAAGSEEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLTLPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNAD 330
            K  KKG   E ADAAA         T+P+N+LKDGQDP ++  + YPEWL  LTL ++ EL  KGY+NLTL E RRYW++ + RKIKE+NAD
Sbjct:   25 KAAKKGRQPEQADAAASQPSVQ---TIPVNYLKDGQDPVVMTNEHYPEWLRCLTLKNMTELNTKGYDNLTLEELRRYWQLASRRKIKESNAD 113          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A6H5JCL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.500e-14
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  136 PLNHLKDGQDPKILPTDQYPEWLWNLTLPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKSF 339
            P+N LKDG+DP ++P ++YPEWLWN+ LPSL  L+RK   + TL E RR+ ++ +  KIK  N    F
Sbjct:   79 PINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRKKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF 146          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: D8LS05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS05_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.190e-14
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  136 PLNHLKDGQDPKILPTDQYPEWLWNLTLPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKSF 339
            P+N LKDG+DP ++P ++YPEWLWN+ LPSL  L+R   ++ TL E RR+ ++ +  KIK  N    F
Sbjct:   39 PINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF 106          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A6J0NPD7_RAPSA (uncharacterized protein LOC108857114 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NPD7_RAPSA)

HSP 1 Score: 72.8 bits (177), Expect = 3.620e-14
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   10 HVPVLTVSRSFAKAKKGGKKGADEEDADAAAGS---EEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLT--LPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKS 336
            +V   T++ +  KAKKGGK G     +DA  GS   +E  +   +  N LKDG DPKILP   YP+WLW L    P+L+EL RK    L   + +R+ ++ T  KIKENN+ K+
Sbjct:   14 YVVRRTLAAAAGKAKKGGKGGG----SDAPKGSSLSKEIKSTTVVGANTLKDGSDPKILPDSDYPDWLWRLLHIRPALSELRRKNVETLPYDDLKRFVKLDTRSKIKENNSIKA 123          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A6I9UGY8_SESIN (54S ribosomal protein L37, mitochondrial n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9UGY8_SESIN)

HSP 1 Score: 72.4 bits (176), Expect = 6.060e-14
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   43 AKAKKGGKKGADEEDADAAAGSEEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLT--LPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKS 336
            AKAKKG K GA  +   A+  S+E  +      N LKDGQDPKILP  +YP+WLW+L    P+L+EL RK   +L   + +R+ ++    +IKENN+ K+
Sbjct:   31 AKAKKGSKGGAAADAPKASLLSKEVKSTTVFGANILKDGQDPKILPDSEYPDWLWHLLDKRPALSELRRKDVESLPYEDLKRFVKLDNRARIKENNSLKA 130          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A1J3JX04_NOCCA (Uncharacterized protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JX04_NOCCA)

HSP 1 Score: 70.9 bits (172), Expect = 6.000e-13
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   25 TVSRSFAKAKKGGKKGADEEDADAAAGSEEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLT--LPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKS 336
            T + + +KAKKGGK G   +    ++ S+E  +   +  N LKDG DPKIL    YP+WLW+L    P+L+EL RK    L   + +R+ ++ T  KIKENN+ K+
Sbjct:   67 TFAAAASKAKKGGKGGGPSDAPKGSSLSKEIKSTTVVGANTLKDGADPKILSDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTRAKIKENNSVKA 172          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A3Q7IR11_SOLLC (Uncharacterized protein n=2 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7IR11_SOLLC)

HSP 1 Score: 71.2 bits (173), Expect = 8.870e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   52 KKGGKKGADEEDADAAAGSEEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLT--LPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNA 327
            KKGGK GA  +   A+  S+E  A   +  N LKDG DPK+LP  +YP+WLW+L    P+L+EL RK   +L   + +R+ ++ T  +IKENN+
Sbjct:  117 KKGGKGGAAGDGPKASTISKEVKASTVVGANILKDGADPKVLPDSEYPDWLWHLLDKRPALSELRRKNLESLPYDDLKRFVKLDTRARIKENNS 210          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: C6T5W2_SOYBN (Uncharacterized protein n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=C6T5W2_SOYBN)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-12
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   22 LTVSRSFA--KAKKGGKKGADEEDADAAAGSEEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLT--LPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKS 336
            +   R+FA  KAKKG K GA  +   A+  S+E  +   +  + LK+G DPKI P  +YP+WLW+L    P+L+EL R+  + L+  + +R+ ++ T  +IKENN+ K+
Sbjct:   21 VACQRTFATGKAKKGSKGGAAADAPKASTLSKEVKSSTVVGASILKEGTDPKIQPDSEYPDWLWHLLDKCPALSELRRRNIDTLSYEDLKRFVKLDTRARIKENNSVKA 129          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A6D2JQ14_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JQ14_9BRAS)

HSP 1 Score: 70.1 bits (170), Expect = 2.870e-12
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   25 TVSRSFAKAKKGGKKGADEEDADAAAGSEEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLT--LPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKS 336
            T + + +KAKKGGK G   +    +  S+E  +   +  N LKDG DPKIL    YP+WLW+L    P+L+EL RK    L   + +R+ ++ T  KIKENN+ K+
Sbjct:  119 TFAAAASKAKKGGKGGGATDAPKGSTLSKEIKSTTVVGANTLKDGSDPKILSDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTRAKIKENNSVKA 224          
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Match: A0A5D3CXE8_CUCME (39S ribosomal protein L54 n=5 Tax=Cucumis TaxID=3655 RepID=A0A5D3CXE8_CUCME)

HSP 1 Score: 68.2 bits (165), Expect = 4.960e-12
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   22 LTVSRSFA---KAKKGGKKGADEEDADAAAGSEEAAAPDTLPLNHLKDGQDPKILPTDQYPEWLWNLT--LPSLNELERKGYNNLTLREERRYWRIKTVRKIKENNADKS 336
            LT  RSFA   K+KKG K GA  +   A+  S+E  +   +  N LK+G DPKI+   +YP WLW+L    P L+EL RK   +L   + RR+ ++ T  +IKENN+ K+
Sbjct:   50 LTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDTRARIKENNSIKA 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6074.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1Y9_9STRA7.080e-2354.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JCL9_9PHAE1.500e-1448.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS05_ECTSI3.190e-1447.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6J0NPD7_RAPSA3.620e-1442.11uncharacterized protein LOC108857114 n=1 Tax=Rapha... [more]
A0A6I9UGY8_SESIN6.060e-1444.0054S ribosomal protein L37, mitochondrial n=1 Tax=S... [more]
A0A1J3JX04_NOCCA6.000e-1340.57Uncharacterized protein (Fragment) n=2 Tax=Noccaea... [more]
A0A3Q7IR11_SOLLC8.870e-1343.62Uncharacterized protein n=2 Tax=Solanum lycopersic... [more]
C6T5W2_SOYBN1.870e-1238.53Uncharacterized protein n=3 Tax=Glycine subgen. So... [more]
A0A6D2JQ14_9BRAS2.870e-1240.57Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A5D3CXE8_CUCME4.960e-1241.8239S ribosomal protein L54 n=5 Tax=Cucumis TaxID=36... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6074contigP-wetherbeei_contig6074:964..1415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LS05
Preferred nameMRPL54
PFAMsRibosomal_L37
Model size342
Max annot lvl2759|Eukaryota
KEGG koko:K17435
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue5.23e-15
EggNOG OGsKOG3435@1|root,KOG3435@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L37, mitochondrial
Ec32 orthologEc-08_001630.1
Descriptionmitochondrial translation
Cds size342
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.4480886-CDS-P-wetherbeei_contig6074:963..10891683186887.4480886-CDS-P-wetherbeei_contig6074:963..1089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6074 964..1089 -
1683186887.459888-CDS-P-wetherbeei_contig6074:1199..14151683186887.459888-CDS-P-wetherbeei_contig6074:1199..1415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6074 1200..1415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6074.2.1prot_P-wetherbeei_contig6074.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6074 964..1415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6074.2.1

>prot_P-wetherbeei_contig6074.2.1 ID=prot_P-wetherbeei_contig6074.2.1|Name=mRNA_P-wetherbeei_contig6074.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
PRCHVPVLTVSRSFAKAKKGGKKGADEEDADAAAGSEEAAAPDTLPLNHL
KDGQDPKILPTDQYPEWLWNLTLPSLNELERKGYNNLTLREERRYWRIKT
VRKIKENNADKSF*
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mRNA from alignment at P-wetherbeei_contig6074:964..1415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6074.2.1 ID=mRNA_P-wetherbeei_contig6074.2.1|Name=mRNA_P-wetherbeei_contig6074.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=452bp|location=Sequence derived from alignment at P-wetherbeei_contig6074:964..1415- (Phaeothamnion wetherbeei SAG_119_79)
CCGAGGTGCCACGTGCCCGTGCTCACCGTTTCGAGAAGCTTCGCCAAAGC GAAAAAGGGTGGGAAGAAGGGCGCCGACGAGGAAGACGCGGACGCAGCGG CAGGCTCCGAAGAAGCCGCGGCTCCGGATACCCTCCCGCTTAACCATTTG AAGGACGGGCAAGACCCAAAGATCCTTCCCACAGACCAGTACCCGGAGTG GTTATGGAACCTCACAGTGAGTCCAAAGCCCTTTCCAATTCTCGACCGCT GCGGTCGTTGTCCTTCTGCTCAAGGCCGAACGCCGACTTATCTCTTTGCT TCTTCTTGACGCGCTTCCTTCACCAGTTACCATCGCTGAACGAGCTGGAG CGAAAAGGCTACAACAACCTGACGCTGCGAGAGGAACGACGATATTGGCG CATCAAAACTGTTCGAAAAATCAAAGAGAATAACGCCGACAAGTCTTTCT AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6074:964..1415-

>mRNA_P-wetherbeei_contig6074.2.1 ID=mRNA_P-wetherbeei_contig6074.2.1|Name=mRNA_P-wetherbeei_contig6074.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig6074:964..1415- (Phaeothamnion wetherbeei SAG_119_79)
CCGAGGTGCCACGTGCCCGTGCTCACCGTTTCGAGAAGCTTCGCCAAAGC
GAAAAAGGGTGGGAAGAAGGGCGCCGACGAGGAAGACGCGGACGCAGCGG
CAGGCTCCGAAGAAGCCGCGGCTCCGGATACCCTCCCGCTTAACCATTTG
AAGGACGGGCAAGACCCAAAGATCCTTCCCACAGACCAGTACCCGGAGTG
GTTATGGAACCTCACATTACCATCGCTGAACGAGCTGGAGCGAAAAGGCT
ACAACAACCTGACGCTGCGAGAGGAACGACGATATTGGCGCATCAAAACT
GTTCGAAAAATCAAAGAGAATAACGCCGACAAGTCTTTCTAG
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