mRNA_P-wetherbeei_contig6065.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6065.3.1
Unique NamemRNA_P-wetherbeei_contig6065.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6065.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6065contigP-wetherbeei_contig6065:1057..3580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2174
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1917
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186886.3688703-UTR-P-wetherbeei_contig6065:1056..11741683186886.3688703-UTR-P-wetherbeei_contig6065:1056..1174Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6065 1057..1174 +
1683186886.4057014-UTR-P-wetherbeei_contig6065:3441..35801683186886.4057014-UTR-P-wetherbeei_contig6065:3441..3580Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6065 3442..3580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186886.3772395-CDS-P-wetherbeei_contig6065:1174..14791683186886.3772395-CDS-P-wetherbeei_contig6065:1174..1479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6065 1175..1479 +
1683186886.3872087-CDS-P-wetherbeei_contig6065:1756..31031683186886.3872087-CDS-P-wetherbeei_contig6065:1756..3103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6065 1757..3103 +
1683186886.396862-CDS-P-wetherbeei_contig6065:3176..34411683186886.396862-CDS-P-wetherbeei_contig6065:3176..3441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6065 3177..3441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6065.3.1prot_P-wetherbeei_contig6065.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6065 1175..3441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6065.3.1

>prot_P-wetherbeei_contig6065.3.1 ID=prot_P-wetherbeei_contig6065.3.1|Name=mRNA_P-wetherbeei_contig6065.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=639bp
MKRLPRSTVAFAGGFVLLHFSAAREYAGVEATFAGVDVYGEQNIRSPQNL
RRGIAGFLPPPLQSRRLAVCGTFSVICPPPTVWNPTCIIKPPTLSTHYIR
YEGCETEDPVASVCCAADNAAQVAAADIVQEEVEKLKSCVQASPGFLFDV
AKCTADQLENNLLALEKCVQDLEGCAATAIQRILPDMDTTLCETNEMKAA
FTQGELLSSVEDDYNAIYGPRVWDSNSAKIAATIAFGPPGVGVDQLIHLI
KDQAAELFKAIEEALYDLGETVITDLKQVVTGMFMNLLLHGDTSFPPPGL
RTALDLKLQIKRVSCTKEITVPGSEEILAIMDSEGYFQWAFGFRIKGSPP
VRITDDQVPVPLQLTNNSAALVWLYGPPDAPTGVRYKSDLDIYENKFVSA
RSTVGNPAMIFLVKDGSRTWVQSTCGLGCDSTGGRDPCGTADSITLDEST
LDLIPLSITNDAINCFKERYNGKFIKMDGSLTIHLVQDGQRRPIISDCTM
ACTATLSRSPCGDVETVSVGLMNAFSIGANIDCIWEKYSGKFISAPGTST
IATALADVIPAALTGRRWRTRRRWIGSLWRPHRKSTASRSATTASSSKWT
AAPPSTWCKTDSGGRSSATAQWHARPLFPAALAATSKL*
back to top

mRNA from alignment at P-wetherbeei_contig6065:1057..3580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6065.3.1 ID=mRNA_P-wetherbeei_contig6065.3.1|Name=mRNA_P-wetherbeei_contig6065.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2524bp|location=Sequence derived from alignment at P-wetherbeei_contig6065:1057..3580+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCAATTCAGCCTCAACGTAGTACTCGGATCACCGCGCGAAGCCGTTTG
TTTAAAACCGTTACTTTTCCCCAGAACCCCGCTCCTCAGGAGTGAGGTCT
TCTTGTTCTCGCGGCGCGATGAAGAGGCTCCCACGCTCGACAGTCGCGTT
TGCAGGGGGTTTCGTCCTGCTGCATTTTTCTGCTGCTCGCGAATATGCCG
GTGTAGAAGCAACCTTTGCAGGAGTGGACGTGTACGGCGAGCAGAACATC
AGGTCGCCCCAGAACCTTCGAAGAGGTATCGCCGGTTTCCTCCCCCCGCC
GCTTCAGTCTCGCAGACTTGCCGTGTGCGGCACCTTCTCAGTGATTTGCC
CGCCGCCGACGGTGTGGAACCCAACCTGCATCATCAAACCGCCGACGCTC
TCCACGCACTACATCCGTTACGAGTAAGTTATAGACACAACTCCCGCGCT
TGAAGTGTGCGGGTTTTAGCCCGGGTCAGATTGAACTTTGTAGTACTCGC
TGATTTTTTCCGCATCGCTCTAAGAAGACTTCTCCAGTCTTCCTCTTGTG
ACTTTTTTTAATCCAGAGTGTTTCCTCTCCTTTTCTGCTTGACGCGGCTT
GTCGTCGCCGCCGTCCTCACGAATTCATGTGTCGTATGTCGCTCGTGGCT
CCTTTCTTTTCTTTCTGCCTTTGCATTACCTCGCTCGCCCCTCCTCGAAG
GGGTTGTGAAACCGAGGACCCGGTCGCATCTGTCTGCTGTGCAGCAGACA
ACGCAGCCCAAGTTGCAGCTGCAGACATCGTGCAAGAGGAGGTGGAAAAA
CTGAAAAGTTGCGTTCAAGCTTCGCCTGGGTTCCTCTTTGATGTGGCCAA
GTGTACCGCGGATCAGCTTGAAAATAACCTCTTGGCTCTTGAGAAATGTG
TTCAAGACCTTGAAGGTTGCGCGGCCACCGCTATACAACGCATTCTGCCC
GACATGGATACGACGCTTTGCGAAACCAACGAGATGAAGGCGGCGTTCAC
CCAGGGCGAACTTCTTTCCTCTGTAGAAGACGATTACAACGCCATCTACG
GCCCCCGTGTTTGGGACTCGAACAGCGCGAAAATTGCCGCAACGATTGCC
TTTGGGCCCCCGGGTGTTGGTGTGGACCAACTGATTCATCTCATCAAGGA
CCAGGCCGCAGAACTTTTCAAGGCCATAGAGGAAGCGTTGTACGATCTGG
GCGAAACTGTGATAACGGACCTAAAGCAAGTCGTCACCGGCATGTTTATG
AACCTGCTGCTGCATGGAGACACCAGTTTCCCGCCGCCGGGCCTGCGAAC
TGCACTGGACCTCAAGCTGCAAATTAAGCGCGTCTCTTGCACAAAAGAAA
TCACTGTTCCCGGCTCGGAAGAGATCCTCGCCATCATGGACTCGGAGGGG
TACTTTCAGTGGGCGTTCGGCTTTCGGATCAAGGGGTCACCTCCTGTTCG
CATCACTGATGATCAAGTGCCGGTGCCGCTACAACTGACCAACAACAGCG
CGGCCCTCGTATGGTTGTATGGGCCCCCCGACGCGCCCACGGGAGTTCGC
TACAAAAGTGACCTCGACATCTACGAAAACAAGTTTGTCAGTGCCAGGAG
TACAGTGGGAAACCCTGCCATGATATTTCTGGTGAAAGACGGGTCAAGGA
CGTGGGTGCAATCGACCTGCGGCTTGGGGTGCGACAGCACTGGCGGACGC
GATCCCTGCGGCACGGCTGACTCGATAACGCTTGACGAAAGCACATTAGA
CCTCATTCCTCTCTCCATCACCAATGACGCCATCAACTGCTTCAAAGAGC
GCTACAACGGCAAGTTCATCAAAATGGACGGCAGCCTCACCATCCACCTG
GTGCAAGACGGACAGCGGCGGCCGATCATCAGCGACTGCACAATGGCATG
CACGGCCACCCTTTCCCGCAGCCCGTGCGGTGACGTCGAAACTGTGAGCG
TGGGGCTTATGAATGCGTTCTCGATTGGGGCCAACATCGACTGCATTTGG
GAGAAGTACAGCGGCAAGTTTATCAGCGCTCCTGGCACCAGTACCATCTA
TCTTGCCAGTACCTATGTCCCTGGCAAGACCAGCACCAGGACCGCGGTGC
AGTCCATCTGCGGTCTTGGATGCGACAGCACTGGCGGACGTGATCCCTGC
GGCGCTGACTGGACGACGTTGGCGGACCAGACGACGCTGGATCGGTTCAT
TGTGGCGGCCACACCGGAAGTCAACTGCTTCAAGGAGCGCTACAACGGCA
AGTTCATCAAAATGGACGGCAGCCCCACCATCCACCTGGTGCAAGACGGA
CAGCGGCGGCCGATCATCAGCGACTGCACAATGGCATGCACGGCCACTCT
TTCCCGCAGCCCTTGCAGCGACGTCGAAACTGTGAGCGTGGGACTTCTGA
ATGCGTTCTCGATTGGGGCCAACATCGACTGCATTTGGGAGAAGTACAGC
GGCAAGTTTATCAGCGCTCCTGGCACCAGTACCATCTATCTTGCCAGCAC
CTATGTCCCTGGCAAGACCAGCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6065:1057..3580+

>mRNA_P-wetherbeei_contig6065.3.1 ID=mRNA_P-wetherbeei_contig6065.3.1|Name=mRNA_P-wetherbeei_contig6065.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1917bp|location=Sequence derived from alignment at P-wetherbeei_contig6065:1057..3580+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGGCTCCCACGCTCGACAGTCGCGTTTGCAGGGGGTTTCGTCCT
GCTGCATTTTTCTGCTGCTCGCGAATATGCCGGTGTAGAAGCAACCTTTG
CAGGAGTGGACGTGTACGGCGAGCAGAACATCAGGTCGCCCCAGAACCTT
CGAAGAGGTATCGCCGGTTTCCTCCCCCCGCCGCTTCAGTCTCGCAGACT
TGCCGTGTGCGGCACCTTCTCAGTGATTTGCCCGCCGCCGACGGTGTGGA
ACCCAACCTGCATCATCAAACCGCCGACGCTCTCCACGCACTACATCCGT
TACGAGGGTTGTGAAACCGAGGACCCGGTCGCATCTGTCTGCTGTGCAGC
AGACAACGCAGCCCAAGTTGCAGCTGCAGACATCGTGCAAGAGGAGGTGG
AAAAACTGAAAAGTTGCGTTCAAGCTTCGCCTGGGTTCCTCTTTGATGTG
GCCAAGTGTACCGCGGATCAGCTTGAAAATAACCTCTTGGCTCTTGAGAA
ATGTGTTCAAGACCTTGAAGGTTGCGCGGCCACCGCTATACAACGCATTC
TGCCCGACATGGATACGACGCTTTGCGAAACCAACGAGATGAAGGCGGCG
TTCACCCAGGGCGAACTTCTTTCCTCTGTAGAAGACGATTACAACGCCAT
CTACGGCCCCCGTGTTTGGGACTCGAACAGCGCGAAAATTGCCGCAACGA
TTGCCTTTGGGCCCCCGGGTGTTGGTGTGGACCAACTGATTCATCTCATC
AAGGACCAGGCCGCAGAACTTTTCAAGGCCATAGAGGAAGCGTTGTACGA
TCTGGGCGAAACTGTGATAACGGACCTAAAGCAAGTCGTCACCGGCATGT
TTATGAACCTGCTGCTGCATGGAGACACCAGTTTCCCGCCGCCGGGCCTG
CGAACTGCACTGGACCTCAAGCTGCAAATTAAGCGCGTCTCTTGCACAAA
AGAAATCACTGTTCCCGGCTCGGAAGAGATCCTCGCCATCATGGACTCGG
AGGGGTACTTTCAGTGGGCGTTCGGCTTTCGGATCAAGGGGTCACCTCCT
GTTCGCATCACTGATGATCAAGTGCCGGTGCCGCTACAACTGACCAACAA
CAGCGCGGCCCTCGTATGGTTGTATGGGCCCCCCGACGCGCCCACGGGAG
TTCGCTACAAAAGTGACCTCGACATCTACGAAAACAAGTTTGTCAGTGCC
AGGAGTACAGTGGGAAACCCTGCCATGATATTTCTGGTGAAAGACGGGTC
AAGGACGTGGGTGCAATCGACCTGCGGCTTGGGGTGCGACAGCACTGGCG
GACGCGATCCCTGCGGCACGGCTGACTCGATAACGCTTGACGAAAGCACA
TTAGACCTCATTCCTCTCTCCATCACCAATGACGCCATCAACTGCTTCAA
AGAGCGCTACAACGGCAAGTTCATCAAAATGGACGGCAGCCTCACCATCC
ACCTGGTGCAAGACGGACAGCGGCGGCCGATCATCAGCGACTGCACAATG
GCATGCACGGCCACCCTTTCCCGCAGCCCGTGCGGTGACGTCGAAACTGT
GAGCGTGGGGCTTATGAATGCGTTCTCGATTGGGGCCAACATCGACTGCA
TTTGGGAGAAGTACAGCGGCAAGTTTATCAGCGCTCCTGGCACCAGTACC
ATTGCGACAGCACTGGCGGACGTGATCCCTGCGGCGCTGACTGGACGACG
TTGGCGGACCAGACGACGCTGGATCGGTTCATTGTGGCGGCCACACCGGA
AGTCAACTGCTTCAAGGAGCGCTACAACGGCAAGTTCATCAAAATGGACG
GCAGCCCCACCATCCACCTGGTGCAAGACGGACAGCGGCGGCCGATCATC
AGCGACTGCACAATGGCATGCACGGCCACTCTTTCCCGCAGCCCTTGCAG
CGACGTCGAAACTGTGA
back to top