mRNA_P-wetherbeei_contig6062.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6062.2.1
Unique NamemRNA_P-wetherbeei_contig6062.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: D7FLL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.540e-12
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAYKADRPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RYQVD+DLKK VDE A KA    VRKAV+ +FEERYLNQ     + KKATG+KYF++KLRF
Sbjct:  102 TRYQVDIDLKKAVDETAIKASPTDVRKAVRKIFEERYLNQKDVKSE-KKATGVKYFFEKLRF 162
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A836CBN1_9STRA (60S ribosomal protein L27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.180e-10
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAYKADRPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RY  D++LK VV+E+A+KA RP VRKAVK VFEERYLNQ  +    KKA+G KYF+ KL F
Sbjct:   82 TRYTADIELKTVVEESAFKASRPEVRKAVKKVFEERYLNQG-QIKSEKKASGSKYFFAKLAF 142
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A482S9N4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9N4_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 5.640e-9
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAYKAD-RPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RY VD+DLKKVVDE++   + R   RKAVK VFEE+Y  Q  ++DK  KA G++YF++KLRF
Sbjct:   27 TRYSVDIDLKKVVDESSLSEENRVNTRKAVKKVFEEKYKTQTAKNDK--KAAGVQYFFNKLRF 87
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A7S4SWS4_9DINO (60S ribosomal protein L27 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SWS4_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 5.860e-8
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAYKADRPAVRKAVKAVFEERYLNQPPRSDKS-KKATGIKYF 1422
            +RY VDMDLKK VDEAA+K  +   RK VK +FE+RYLNQ   S KS KKA+G++YF
Sbjct:   89 TRYSVDMDLKKTVDEAAFKEAKKETRKTVKKIFEDRYLNQA--SGKSEKKASGVQYF 143
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: B8CDJ9_THAPS (60S ribosomal protein L27 n=2 Tax=Thalassiosira TaxID=35127 RepID=B8CDJ9_THAPS)

HSP 1 Score: 60.8 bits (146), Expect = 2.110e-7
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEA-AYKADRPA-VRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RYQVDMDLKK VDEA    AD+   V+KA+K +FE+RYLNQ   + + KKA G  YF+ KLRF
Sbjct:   83 TRYQVDMDLKKAVDEADLLAADKKIEVKKALKKIFEDRYLNQKEVTSE-KKAAGSSYFFQKLRF 145
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A6U1L5V7_9STRA (60S ribosomal protein L27 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1L5V7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.650e-7
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAYKADRPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RY VD+DLKK+VDE+  K  +   RKA+K VFEERY +Q   +   KKA G  YFY K+ F
Sbjct:   82 TRYVVDLDLKKIVDESGLKEGKAEARKAIKKVFEERY-HQQSSAKXEKKAAGTMYFYKKMAF 142
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A7S0Q4L0_9EUKA (60S ribosomal protein L27 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4L0_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 9.220e-7
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAY-KADRPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RY VD+DLKKVVDE +  +A+    RK+VK +F+E+Y  Q  ++DK  K+TG+ YF++KLRF
Sbjct:   82 TRYSVDIDLKKVVDENSISQANITDTRKSVKKLFQEKYTTQSAKTDK--KSTGVSYFFNKLRF 142
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A6S8Z8U4_9STRA (60S ribosomal protein L27 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8Z8U4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.830e-6
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAYK-ADRPA-VRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RY VDMDLKK VDEA  K A+R   V+K +K +FE+RYLNQ   + + KKA G  YF+ KLRF
Sbjct:   83 TRYVVDMDLKKTVDEADVKNAERKVDVKKNLKTIFEDRYLNQKAVTSE-KKAAGSSYFFQKLRF 145
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A7S2SP13_9STRA (60S ribosomal protein L27 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP13_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.480e-6
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAY--KADRPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RYQVDMDLKK VDEA    +  +  V+K +K +FE+RYLNQ   + + KKA G  YF+ KLRF
Sbjct:   83 TRYQVDMDLKKAVDEADLLNEEKKVEVKKNLKKIFEDRYLNQKNVTSE-KKAAGSNYFFQKLRF 145
[Close]
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Match: A0A7S1BL28_9STRA (60S ribosomal protein L27 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BL28_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.130e-6
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 1 
Query: 1255 SRYQVDMDLKKVVDEAAYKAD-------RPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF 1440
            +RYQVDMDLKKVV E A  +        R   +KA+K VFEERYLNQ   + + KKA G  YF+ KLRF
Sbjct:   89 TRYQVDMDLKKVVGEQALASTDGLRGDARVDAKKALKRVFEERYLNQKDVTSE-KKAIGSNYFFKKLRF 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6062.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FLL5_ECTSI2.540e-1264.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBN1_9STRA1.180e-1061.2960S ribosomal protein L27 n=1 Tax=Tribonema minus ... [more]
A0A482S9N4_9ARCH5.640e-955.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4SWS4_9DINO5.860e-861.4060S ribosomal protein L27 (Fragment) n=1 Tax=Alexa... [more]
B8CDJ9_THAPS2.110e-757.8160S ribosomal protein L27 n=2 Tax=Thalassiosira Ta... [more]
A0A6U1L5V7_9STRA3.650e-751.6160S ribosomal protein L27 n=1 Tax=Pelagomonas calc... [more]
A0A7S0Q4L0_9EUKA9.220e-750.7960S ribosomal protein L27 n=1 Tax=Coccolithus braa... [more]
A0A6S8Z8U4_9STRA1.830e-656.2560S ribosomal protein L27 n=2 Tax=Ditylum brightwe... [more]
A0A7S2SP13_9STRA2.480e-653.1360S ribosomal protein L27 n=1 Tax=Rhizochromulina ... [more]
A0A7S1BL28_9STRA3.130e-653.6260S ribosomal protein L27 n=2 Tax=Corethron hystri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6062contigP-wetherbeei_contig6062:1711..3515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLL5
Preferred nameRPL27
PFAMsKOW,Ribosomal_L27e
Model size1805
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K02901,ko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,ko03010,map00563,map01100,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031960,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051385,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097305,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901700,GO:1904044,GO:1990904
Exons1
Evalue1.44e-14
EggNOG OGsCOG2163@1|root,KOG3418@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L27e
Ec32 orthologEc-17_000680.1
Descriptionstructural constituent of ribosome
Cds size594
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186886.3213415-UTR-P-wetherbeei_contig6062:1710..20721683186886.3213415-UTR-P-wetherbeei_contig6062:1710..2072Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6062 1711..2072 -
1683186886.345675-UTR-P-wetherbeei_contig6062:2666..35151683186886.345675-UTR-P-wetherbeei_contig6062:2666..3515Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6062 2667..3515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186886.3341014-CDS-P-wetherbeei_contig6062:2072..26661683186886.3341014-CDS-P-wetherbeei_contig6062:2072..2666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6062 2073..2666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6062.2.1prot_P-wetherbeei_contig6062.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6062 2073..2666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6062.2.1

>prot_P-wetherbeei_contig6062.2.1 ID=prot_P-wetherbeei_contig6062.2.1|Name=mRNA_P-wetherbeei_contig6062.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=198bp
MCATSPTLTNCFDIHWIPSFFKSRLHPTLCALCCRNLKLTVSFLCPLSLL
GLNFCRPAPHSASPCASSPCCFLVWCCFSPGACHVPPHHRCRRCRNLQLL
TPPGKTDRIRKIAGNPTEKRPKSGKLSKPKRNEKLSRYQVDMDLKKVVDE
AAYKADRPAVRKAVKAVFEERYLNQPPRSDKSKKATGIKYFYDKLRF*
back to top

mRNA from alignment at P-wetherbeei_contig6062:1711..3515-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6062.2.1 ID=mRNA_P-wetherbeei_contig6062.2.1|Name=mRNA_P-wetherbeei_contig6062.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1805bp|location=Sequence derived from alignment at P-wetherbeei_contig6062:1711..3515- (Phaeothamnion wetherbeei SAG_119_79)
GCGATGAGCAAGGACAAGGTAAAGAAGCGATCAAAGGTCAAGCCCTTCGT
GAAGTACGTGAACGTGAACCACATCATGCCCACACGGTGAGTTTTGATTT
CCTTCAAAAGATTGTGACATGCTTCGTGCTACAATAGTGTGATGAATTGT
TTAGACGTAAACATGTGTATGTGCAGCTGATTTGCGTGAAAATGCGAGGC
AATCAAATATTTTCTGCTGCTTGTGCGTTGAGGTTTCCAAGCCCGCTCCG
GGTGCGGCCCCCTTAAGTTCCGTGCTTTCGTATTTTCCTCAAAAATACGT
TGATGAGTGCAGCTTGTTATTGTGCGCCATTGATTTGACGTTACGAGGCC
TCTCAGTCTCGTTTTTGCGGCGCATAAGGACTGCATGGGGAGCTCGCTGA
ACTCTGCGACTATTTTCATTGCTTTTGCGCCATGATTAGGGCTCTCTCGT
CGCACGTTTTGTAAGGGGCATACTGTAGGCAGGTTTTGTTTCCCATGCTT
ATTTCTCTCTAGAAGAAGTGATGCAGTTATCCAACAGAACGTTTTCTGTC
TGATTCGGGTGCGGCGGTTTTCTGTCTGATTCGGGTGCTGTTGACTTCCA
CGGTCGGGCCCTGATTTCGTGGAGAGATGTCCTCCTCTTGGGATTGTGCT
CATTTTCCTTATTCCCCGTCTTTTCTGGTATATCTTCACAAGTGACTGTG
TTGATTTGGTTTCCTATTCAGTTGTGCATGTCTATTGTCTGGATGTTTTG
ATGCGTTTTGGGCTGCGCTAAGCCACTTCGTAGAGCCTGAAGTTGCGTAA
TCGCGTAGTGGTCTTGGTTATCTTTTTTCTGGTTCGCTTTTCGTTCGCGA
TGTGTGCAACCAGCCCCACTTTAACAAATTGTTTCGATATACATTGGATT
CCTTCATTTTTTAAATCGCGTCTCCATCCCACGCTGTGTGCACTTTGTTG
TAGGAACCTGAAACTGACTGTCTCGTTCCTGTGTCCTCTCTCCCTTCTTG
GCCTCAATTTCTGTCGCCCGGCGCCCCATTCCGCTTCTCCCTGCGCTTCC
TCTCCCTGTTGCTTCCTCGTCTGGTGCTGCTTCTCTCCTGGCGCGTGCCA
CGTACCACCGCATCACCGCTGCCGCCGCTGTCGGAACTTGCAACTGCTGA
CACCGCCTGGAAAAACCGACCGAATCCGGAAAATCGCCGGAAACCCGACG
GAAAAACGGCCGAAATCCGGAAAACTGTCGAAACCGAAACGAAACGAGAA
ATTGAGCAGGTACCAGGTGGACATGGACCTGAAGAAGGTAGTGGACGAGG
CGGCCTACAAGGCGGACCGGCCGGCGGTGCGGAAAGCCGTCAAGGCCGTC
TTCGAGGAGCGCTACCTCAACCAGCCGCCGCGTTCCGACAAGTCCAAGAA
GGCTACTGGCATCAAGTACTTCTACGACAAGCTCCGCTTCTGATCTGATG
AAAAACCTTCTTTCTGAACCGCCAATTTCCGGGAGCAGAAAGCCGAGCTC
TTTCGGCGAATATTCTTTCCTTCTGCGCCGTCGGCCGTTGGCGTCGCGGC
GGGAGGACGAGGAGGCAGAAGGAGGGGGTTACCCGTCGCCGGCCGGGCAG
CGAGCAGCGGCGGCGGGTGGCGGGCGGCGGCGGCGGTCCGATCGGCTGCC
GCCCGCTGCCTCTCGCCTCTCGTCGGTCCCGCCATGTTAAACACGAAGAA
ATACCTGGATAGCGTGGAACTCCCCGTACTGTGACACTTTGTTTACGGGA
CTCGTTTCTTGCGTCCGTCTTGCGTTCCCTGCTCAATGTGGTGCCTCTGC
TCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6062:1711..3515-

>mRNA_P-wetherbeei_contig6062.2.1 ID=mRNA_P-wetherbeei_contig6062.2.1|Name=mRNA_P-wetherbeei_contig6062.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig6062:1711..3515- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTGCAACCAGCCCCACTTTAACAAATTGTTTCGATATACATTGGAT
TCCTTCATTTTTTAAATCGCGTCTCCATCCCACGCTGTGTGCACTTTGTT
GTAGGAACCTGAAACTGACTGTCTCGTTCCTGTGTCCTCTCTCCCTTCTT
GGCCTCAATTTCTGTCGCCCGGCGCCCCATTCCGCTTCTCCCTGCGCTTC
CTCTCCCTGTTGCTTCCTCGTCTGGTGCTGCTTCTCTCCTGGCGCGTGCC
ACGTACCACCGCATCACCGCTGCCGCCGCTGTCGGAACTTGCAACTGCTG
ACACCGCCTGGAAAAACCGACCGAATCCGGAAAATCGCCGGAAACCCGAC
GGAAAAACGGCCGAAATCCGGAAAACTGTCGAAACCGAAACGAAACGAGA
AATTGAGCAGGTACCAGGTGGACATGGACCTGAAGAAGGTAGTGGACGAG
GCGGCCTACAAGGCGGACCGGCCGGCGGTGCGGAAAGCCGTCAAGGCCGT
CTTCGAGGAGCGCTACCTCAACCAGCCGCCGCGTTCCGACAAGTCCAAGA
AGGCTACTGGCATCAAGTACTTCTACGACAAGCTCCGCTTCTGA
back to top