mRNA_P-wetherbeei_contig606.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig606.1.1
Unique NamemRNA_P-wetherbeei_contig606.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig606.1.1 vs. uniprot
Match: A0A6H5L0X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.850e-6
Identity = 32/91 (35.16%), Postives = 41/91 (45.05%), Query Frame = 2 
Query:  605 PHCWTLTKQAGVWFWLNRVTGECTDEPPHPGMAAPRGPGHGAGXXXXXXXXNGHRGMLSV---------RRAAADTYDHSPLEEAMRILDG 850
            P  W   K+AGVWFW+N VTG  TDE PH  +  PR     +         +G   +L               A  YD S  ++AMR+LDG
Sbjct:   42 PVNWRRVKEAGVWFWINDVTGVATDECPHESLRPPRAARKRSMPREGSIAGDGSETLLECLDIDFDGQEEGTGALVYDSSEFQQAMRLLDG 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig606.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0X6_9PHAE2.850e-635.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig606contigP-wetherbeei_contig606:2..1676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size998
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_000740.1
Cds size642
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig606.1.1prot_P-wetherbeei_contig606.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig606 129..1286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186886.0798607-UTR-P-wetherbeei_contig606:1..1281683186886.0798607-UTR-P-wetherbeei_contig606:1..128Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig606 2..128 -
1683186886.111943-UTR-P-wetherbeei_contig606:1286..13181683186886.111943-UTR-P-wetherbeei_contig606:1286..1318Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig606 1287..1318 -
1683186886.122745-UTR-P-wetherbeei_contig606:1479..16761683186886.122745-UTR-P-wetherbeei_contig606:1479..1676Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig606 1480..1676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186886.088363-CDS-P-wetherbeei_contig606:128..4501683186886.088363-CDS-P-wetherbeei_contig606:128..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig606 129..450 -
1683186886.0961258-CDS-P-wetherbeei_contig606:709..8251683186886.0961258-CDS-P-wetherbeei_contig606:709..825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig606 710..825 -
1683186886.104048-CDS-P-wetherbeei_contig606:1082..12861683186886.104048-CDS-P-wetherbeei_contig606:1082..1286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig606 1083..1286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig606.1.1

>prot_P-wetherbeei_contig606.1.1 ID=prot_P-wetherbeei_contig606.1.1|Name=mRNA_P-wetherbeei_contig606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
MEPDPFSIPQRASEQTNWYAARMVYLLEDAPFPYNGPIPDPAARSLKPPS
LFMSRRRAKTDSAIQRRHGGSGTSGSNGTGVAGAKAERLAIRTMASDGKP
NAGMGRRNNVKATPTAAAAETDANAPHCWTLTKQAGVWFWLNRVTGECTD
EPPHPGMAAPRGPGHGAGNGGGGYGGNGHRGMLSVRRAAADTYDHSPLEE
AMRILDGKQTVVY*
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mRNA from alignment at P-wetherbeei_contig606:2..1676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig606.1.1 ID=mRNA_P-wetherbeei_contig606.1.1|Name=mRNA_P-wetherbeei_contig606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1675bp|location=Sequence derived from alignment at P-wetherbeei_contig606:2..1676- (Phaeothamnion wetherbeei SAG_119_79)
CCTTCATGATCGCGGGAATCCTACAGGAGTGCGAGCCCTGCGTTCTTCCA
GTCTGTTGCTTTTCGTCCCGTCCTGACGCCACGGAATGCCCAGGCCTTCC
AGGCCTTCCTGAGAGGGTTTACACAGCCTTATCGTCGCAGAGGAGATATC
ATCTTTCTTCTCGACTACCCTGCTTGTTCGCTGCAAGTCTTTGGCAGGTA
TTTTGGCCTCTCAATGTCCAGCTTTCTTTGCCCGTATTCCCCTTTCAGCT
GTGTCGTGAGATTGTCGTGCGGGCAAACGTGCAGTCCAAAACAAAGAGAG
CGCGCGCCCCACGTAAGTTTCAACCTTTTTCTCTTTCCCGCTATTTTTAT
GGCTGCAGAGAAGAGCGTTTTTTGTCGGCGGCAGCGAGCGATGGAGCCCG
ACCCGTTTTCCATTCCGCAGAGGGCTTCTGAGCAGACCAATTGGTACGCC
GCCCGCATGGTGTATCTGTTGGAGGACGCGCCGTTTCCGTATAATGGCCC
CATTCCGGATCCGGCCGCGCGGTCGCTGAAGCCGCCGTCCCTCTTCATGT
CGCGGCGGCGGGCAAAGACCGACTCAGCCATTCAGCGACGGCACGTGAGC
CCTTGGAAAAATTGTTGTTGCGTCTTTATACGTTATTACAGCCCCGCAGA
TCGTCCTCCTTTGCATTTCAATCCACAGAATTATCGCCGTGGAATGCACG
CCAACTCTCCGCCATCCAATCAGATCCCATTTCTTGCTCGCACCGGTCTG
AATTTTACCGCTCTCCAGACTTCTAGGTCCGTCGGCCGCCTCAAATACTT
AGAGAATTCCAACGCTTTGCCTCGGAAACCGGCGCCCTTTTCCTCCCGCA
GGGTGGAAGCGGAACCAGCGGCAGCAACGGCACCGGCGTCGCCGGGGCGA
AAGCGGAGCGTCTGGCGATCAGGACGATGGCATCCGACGGCAAACCTAAC
GCCGGCATGGGCCGGAGGTACGTAGCGCGGGAATAAAAAGCTATGCGGAT
GCTGCTTCGATTGAGGACACGCTTGCCTGCTCCCTCGCATCGGATGAATC
GCACGCGCAAGCAGAATGAGTTGCACGAAAGCAGTGCTTCCTTCTTAAAG
TTCAGCGCGGCCCGCCGGTGCTGCCGCCGTCCGCCAGTCACGGCTAACTA
CCAGTAGCACTTTGCTGCCCCTCCTCCCCCCTTGAAAATTGAAAACATTA
CCCTACGCAAACCGAGTCGACCGCAGAAACAACGTCAAGGCGACGCCGAC
AGCCGCGGCGGCGGAGACCGACGCCAATGCGCCGCACTGCTGGACGCTCA
CAAAGCAGGCCGGCGTCTGGTTCTGGCTGAACCGCGTTACCGGTGAGTGC
ACCGACGAGCCGCCGCACCCGGGCATGGCCGCCCCGCGCGGTCCGGGCCA
CGGCGCCGGTAACGGTGGCGGCGGTTACGGCGGTAACGGCCACCGGGGCA
TGCTGTCAGTGCGGCGAGCAGCGGCGGACACATATGACCACTCGCCGCTG
GAGGAAGCCATGCGTATTTTGGACGGCAAGCAGACCGTCGTTTACTGAGC
GAGCTGAGAGCGGCCGGGTGGCCGGCTTCCAGTTTCTCTTTCAGGGCTGT
TTTTGTTCGAACCCATTTACAGGTTACATACTGTTATGTTGTAGTGACAA
GTAAGCACATAGTGTCGGACGAGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig606:2..1676-

>mRNA_P-wetherbeei_contig606.1.1 ID=mRNA_P-wetherbeei_contig606.1.1|Name=mRNA_P-wetherbeei_contig606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig606:2..1676- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCCCGACCCGTTTTCCATTCCGCAGAGGGCTTCTGAGCAGACCAA
TTGGTACGCCGCCCGCATGGTGTATCTGTTGGAGGACGCGCCGTTTCCGT
ATAATGGCCCCATTCCGGATCCGGCCGCGCGGTCGCTGAAGCCGCCGTCC
CTCTTCATGTCGCGGCGGCGGGCAAAGACCGACTCAGCCATTCAGCGACG
GCACGGTGGAAGCGGAACCAGCGGCAGCAACGGCACCGGCGTCGCCGGGG
CGAAAGCGGAGCGTCTGGCGATCAGGACGATGGCATCCGACGGCAAACCT
AACGCCGGCATGGGCCGGAGAAACAACGTCAAGGCGACGCCGACAGCCGC
GGCGGCGGAGACCGACGCCAATGCGCCGCACTGCTGGACGCTCACAAAGC
AGGCCGGCGTCTGGTTCTGGCTGAACCGCGTTACCGGTGAGTGCACCGAC
GAGCCGCCGCACCCGGGCATGGCCGCCCCGCGCGGTCCGGGCCACGGCGC
CGGTAACGGTGGCGGCGGTTACGGCGGTAACGGCCACCGGGGCATGCTGT
CAGTGCGGCGAGCAGCGGCGGACACATATGACCACTCGCCGCTGGAGGAA
GCCATGCGTATTTTGGACGGCAAGCAGACCGTCGTTTACTGA
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