mRNA_P-wetherbeei_contig6055.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6055.3.1
Unique NamemRNA_P-wetherbeei_contig6055.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: A0A6L5FER5_9HYPH (Decarboxylase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FER5_9HYPH)

HSP 1 Score: 255 bits (651), Expect = 2.990e-84
Identity = 128/174 (73.56%), Postives = 144/174 (82.76%), Query Frame = 1 
Query:   31 MPWSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGGNPAGNAKLK 552
            M WS   L+ LKDNDVRLV+YVPDNVLTPL+ GVT+DNYFM+V ATREDEA+G+AAG WMGG+K  VMMQTSGFA+  N LASL VP QIP +MIISERGT+GEF   Q LVARTMRPVLD++ +THHTLTDE TL F+VD+SIKQA  TQ PVA ILSPLLTGGNP   AKLK
Sbjct:    1 MTWSETILQTLKDNDVRLVTYVPDNVLTPLLRGVTADNYFMAVGATREDEALGIAAGAWMGGIKGCVMMQTSGFAVAPNTLASLIVPFQIPAIMIISERGTLGEFNSGQALVARTMRPVLDSVAVTHHTLTDEKTLRFMVDKSIKQAVSTQAPVALILSPLLTGGNPVAEAKLK 174
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: A0A1Q7BEH9_9PROT (Decarboxylase n=5 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BEH9_9PROT)

HSP 1 Score: 252 bits (644), Expect = 3.370e-83
Identity = 123/173 (71.10%), Postives = 145/173 (83.82%), Query Frame = 1 
Query:   31 MPWSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGGNPAGNAKL 549
            M W++ FL+ LK+NDVRLV+YVPDNVLTPLI G  +DNYFMS+ ATREDEA+G  AG +MGG++ V MMQTSGFAL+ANALASL VP QIP ++ +SERGT+GEF I Q  VARTMRP LD++ +THHTLTDEAT+P IVD+SIKQAF TQ+PV FI SPLLTGGNPA  AKL
Sbjct:    1 MTWADTFLRTLKENDVRLVTYVPDNVLTPLIDGAAADNYFMSIGATREDEAVGTLAGAYMGGLRGVAMMQTSGFALIANALASLIVPYQIPAIIAVSERGTLGEFNIGQVTVARTMRPTLDSIAVTHHTLTDEATMPLIVDKSIKQAFTTQSPVVFIFSPLLTGGNPAAAAKL 173
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: A0A6N7GPV6_9HYPH (Decarboxylase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GPV6_9HYPH)

HSP 1 Score: 248 bits (633), Expect = 1.650e-81
Identity = 124/173 (71.68%), Postives = 138/173 (79.77%), Query Frame = 1 
Query:   31 MPWSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGGNPAGNAKL 549
            MPWS  FL   K NDVR +SYVPDNVLTPLI GVTSDNYF+SV ATREDEA+G+ AG WMGG+K  VMMQTSGFA+  N LASL VP QIP +++ISERGTMGEF I Q  VAR MRP LDTL + +HTL DE+ LPFI+D SIKQA  TQ PVAFILSPLLTGGNP  +AKL
Sbjct:    1 MPWSETFLDVFKKNDVRFISYVPDNVLTPLIKGVTSDNYFISVNATREDEAMGMVAGAWMGGLKGAVMMQTSGFAVTPNTLASLIVPYQIPAILVISERGTMGEFNIGQVAVARIMRPTLDTLSVENHTLDDESKLPFILDASIKQAVKTQAPVAFILSPLLTGGNPVAHAKL 173
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: UPI0015569291 (thiamine pyrophosphate-binding protein n=3 Tax=Bradyrhizobium sp. 83002 TaxID=2734909 RepID=UPI0015569291)

HSP 1 Score: 204 bits (518), Expect = 7.260e-64
Identity = 102/163 (62.58%), Postives = 122/163 (74.85%), Query Frame = 1 
Query:   37 WSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGG 525
            W  I    LK N++ LV YVPD VLTPLIAG+ SD +F +    RE+EA+G+ AG WMGG +  ++MQTSGFA +AN LASL VPSQIP +M++SERGT+GEF + Q+LV RTMRPVLD L + HHT+T    L FIVDRSIKQA  TQ PVA ILSPLLTGG
Sbjct:   20 WHEIVQATLKRNELNLVPYVPDRVLTPLIAGLHSDPFFTTFATAREEEAVGILAGAWMGGRRGALLMQTSGFATLANVLASLVVPSQIPLIMLVSERGTLGEFNVGQSLVCRTMRPVLDALAMEHHTMTRLDELEFIVDRSIKQAVATQAPVALILSPLLTGG 182
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: H0TFS5_9BRAD (Putative Sulfopyruvate decarboxylase (Alpha subunit) n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TFS5_9BRAD)

HSP 1 Score: 203 bits (516), Expect = 1.370e-63
Identity = 102/163 (62.58%), Postives = 122/163 (74.85%), Query Frame = 1 
Query:   37 WSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGG 525
            W  I L+ L+ N+VRLV YVPD VLTPLIAG+ +D YF +    RE+EA+G+ +G WMGG +  ++MQTSGFA +AN LASL VP QIP VM +SERGT+GEF   Q+LV RTMRPVLD+L + HHT+T    L F VDRSIKQA  TQ PVA ILSPLLTGG
Sbjct:   17 WHGIVLRTLRRNEVRLVPYVPDRVLTPLIAGLHADPYFSTFATAREEEAVGILSGAWMGGARGAMLMQTSGFATLANVLASLVVPCQIPLVMFVSERGTLGEFNYGQSLVCRTMRPVLDSLAMEHHTMTRLDELEFTVDRSIKQAVATQAPVALILSPLLTGG 179
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: A0A7Y4H185_9BRAD (Decarboxylase n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A7Y4H185_9BRAD)

HSP 1 Score: 202 bits (515), Expect = 2.280e-63
Identity = 102/163 (62.58%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:   37 WSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGG 525
            W  I L+ LK NDVRL+ YVPD VLTPLI  + +D +F +  A RE+EA+G+ AG WMGGM+  V+MQTSGFA +AN LASL +P QIP +M +SERGT+GEF   Q+LV RTMRPVLD+L + HHT T      FIVDRSIKQA  TQ PVA ILSPLLTGG
Sbjct:   22 WHGIVLQTLKRNDVRLIPYVPDRVLTPLIKSLHADPFFTTFPAAREEEAVGIVAGAWMGGMRGAVLMQTSGFATLANVLASLAIPYQIPLIMFVSERGTLGEFNYGQSLVCRTMRPVLDSLAMEHHTATRLDEFEFIVDRSIKQAVTTQAPVALILSPLLTGG 184
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: A0A1M3PBR4_9PROT (Decarboxylase n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3PBR4_9PROT)

HSP 1 Score: 201 bits (512), Expect = 3.640e-63
Identity = 97/163 (59.51%), Postives = 122/163 (74.85%), Query Frame = 1 
Query:   37 WSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGG 525
            W  I    LK ++VRLV+YVPDNVLTPLI  +T D+YF S   TRE+EA+G+ AG WMGG + +V+MQTSGFA + N LASL VP Q+P +M++SERGT+GEF + Q LVARTMRPVLD++ + HHT++      FIVDRS++QA  TQ P   ILSPLLTGG
Sbjct:    4 WFEIIRDTLKRHEVRLVAYVPDNVLTPLIRAITEDDYFTSFVTTREEEAVGIVAGAWMGGTRGIVLMQTSGFATLPNVLASLAVPFQVPVLMLVSERGTLGEFNLGQALVARTMRPVLDSIAVEHHTISRLDECEFIVDRSVRQAVATQQPACLILSPLLTGG 166
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: A0A1H1KG29_9HYPH (Sulfopyruvate decarboxylase, alpha subunit n=3 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A1H1KG29_9HYPH)

HSP 1 Score: 201 bits (512), Expect = 6.310e-63
Identity = 101/168 (60.12%), Postives = 123/168 (73.21%), Query Frame = 1 
Query:   37 WSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGGNPAGN 540
            W  +    LK NDVRL++YVPD VLTPLI  +  D++F +   TRE+EA+G+ AG WMGGM+  V+MQTSGFA +ANALASL VP QIP +M +SERGT+GEF + Q +V RTMRPVLD LGI  H++T    L FIVDRSI+QA  TQ P A ILSPLLTGG   G+
Sbjct:   21 WHAVIHDTLKANDVRLITYVPDRVLTPLIRSLHEDDFFTAFATTREEEALGIVAGAWMGGMRGAVLMQTSGFATLANALASLAVPYQIPLLMFVSERGTLGEFNLGQAMVCRTMRPVLDALGIEQHSITRLDELEFIVDRSIRQAVATQAPCALILSPLLTGGKSFGS 188
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: UPI001BA65488 (thiamine pyrophosphate-binding protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA65488)

HSP 1 Score: 201 bits (511), Expect = 6.920e-63
Identity = 100/163 (61.35%), Postives = 122/163 (74.85%), Query Frame = 1 
Query:   37 WSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGG 525
            W  + L+ LK NDVRL+ YVPD VLT LI  + +D +F +    RE+EA+G+ +G WMGG+K  V+MQTSGFA +AN LASL VPSQIP +M +SERGT+GEF + Q+LV RTMRPVLD+L + HHT T    L F+VDRSIKQA  TQ PVA ILSPLLTGG
Sbjct:   13 WPEVVLQTLKRNDVRLIPYVPDRVLTGLIKSLHADPFFTTFPTAREEEAVGIVSGAWMGGLKGAVLMQTSGFATLANVLASLVVPSQIPLIMFVSERGTLGEFNLGQSLVCRTMRPVLDSLAMEHHTCTRLDELEFVVDRSIKQAVTTQAPVALILSPLLTGG 175
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BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Match: A0A7C2QS53_9HYPH (Decarboxylase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QS53_9HYPH)

HSP 1 Score: 201 bits (510), Expect = 9.200e-63
Identity = 101/163 (61.96%), Postives = 119/163 (73.01%), Query Frame = 1 
Query:   37 WSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYFMSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQIPTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIVDRSIKQAFMTQTPVAFILSPLLTGG 525
            W  I L   K N+V+LV+YVPD VLTPLI  + +D YF      RE+EA+G+ +G WMGG +  V+MQTSGF  +ANALASL VP QIP VM++SERGT+GEF   Q LVARTMRPVLD+L + HHT+T    L F VDRSIKQA  TQ PVA ILSPLLTGG
Sbjct:   11 WHEIVLATFKSNEVKLVTYVPDRVLTPLIKALHADRYFTCFATAREEEAVGIVSGAWMGGTRGAVLMQTSGFGTLANALASLAVPYQIPLVMLVSERGTLGEFNWGQALVARTMRPVLDSLAVEHHTITRLDELEFTVDRSIKQAVATQAPVALILSPLLTGG 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6055.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FER5_9HYPH2.990e-8473.56Decarboxylase n=1 Tax=Hyphomicrobiales bacterium T... [more]
A0A1Q7BEH9_9PROT3.370e-8371.10Decarboxylase n=5 Tax=unclassified Alphaproteobact... [more]
A0A6N7GPV6_9HYPH1.650e-8171.68Decarboxylase n=1 Tax=Hyphomicrobiales bacterium T... [more]
UPI00155692917.260e-6462.58thiamine pyrophosphate-binding protein n=3 Tax=Bra... [more]
H0TFS5_9BRAD1.370e-6362.58Putative Sulfopyruvate decarboxylase (Alpha subuni... [more]
A0A7Y4H185_9BRAD2.280e-6362.58Decarboxylase n=4 Tax=Bradyrhizobium TaxID=374 Rep... [more]
A0A1M3PBR4_9PROT3.640e-6359.51Decarboxylase n=1 Tax=Rhodospirillales bacterium 7... [more]
A0A1H1KG29_9HYPH6.310e-6360.12Sulfopyruvate decarboxylase, alpha subunit n=3 Tax... [more]
UPI001BA654886.920e-6361.35thiamine pyrophosphate-binding protein n=1 Tax=Bra... [more]
A0A7C2QS53_9HYPH9.200e-6361.96Decarboxylase n=1 Tax=Hyphomicrobiales bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6055contigP-wetherbeei_contig6055:2118..2678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000010_gene1728
Preferred nameMA20_15000
PFAMsTPP_enzyme_N
Model size561
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00506
KEGG koko:K06034
KEGG ReactionR05774
KEGG Pathwayko00680,ko01120,map00680,map01120
KEGG ModuleM00358
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.41e-64
EggNOG OGsCOG4032@1|root,COG4032@2|Bacteria,1R53S@1224|Proteobacteria,2TT20@28211|Alphaproteobacteria,3JTZJ@41294|Bradyrhizobiaceae
EC4.1.1.79
DescriptionThiamine pyrophosphate enzyme, N-terminal TPP binding domain
Cds size561
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.9476905-CDS-P-wetherbeei_contig6055:2117..26781683186885.9476905-CDS-P-wetherbeei_contig6055:2117..2678Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6055 2118..2678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6055.3.1prot_P-wetherbeei_contig6055.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6055 2118..2678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6055.3.1

>prot_P-wetherbeei_contig6055.3.1 ID=prot_P-wetherbeei_contig6055.3.1|Name=mRNA_P-wetherbeei_contig6055.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
MSVLPRSLWRMPWSNIFLKALKDNDVRLVSYVPDNVLTPLIAGVTSDNYF
MSVCATREDEAIGLAAGGWMGGMKSVVMMQTSGFALVANALASLTVPSQI
PTVMIISERGTMGEFQIAQTLVARTMRPVLDTLGITHHTLTDEATLPFIV
DRSIKQAFMTQTPVAFILSPLLTGGNPAGNAKLKPA*
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mRNA from alignment at P-wetherbeei_contig6055:2118..2678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6055.3.1 ID=mRNA_P-wetherbeei_contig6055.3.1|Name=mRNA_P-wetherbeei_contig6055.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig6055:2118..2678+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGTTTTGCCGCGGAGTCTCTGGCGAATGCCCTGGTCGAATATCTT
TCTGAAAGCACTCAAGGACAACGACGTCCGGCTTGTGAGTTACGTGCCGG
ACAATGTGCTGACGCCGCTGATCGCCGGAGTCACCTCCGACAATTATTTC
ATGTCGGTCTGCGCCACCCGCGAGGACGAGGCCATCGGCCTGGCCGCCGG
CGGCTGGATGGGCGGCATGAAGAGTGTGGTGATGATGCAGACGTCGGGCT
TCGCGCTGGTCGCCAATGCGCTGGCCTCGCTCACAGTGCCGTCGCAGATC
CCGACCGTCATGATCATCTCGGAGCGTGGCACGATGGGCGAATTCCAGAT
CGCGCAGACGCTTGTCGCGCGCACCATGCGGCCGGTGCTCGATACGCTCG
GCATCACCCATCACACGCTGACCGACGAAGCCACGCTGCCGTTCATCGTC
GACCGCTCGATCAAGCAGGCGTTCATGACGCAGACGCCTGTGGCTTTTAT
CCTCTCGCCCCTCCTGACCGGCGGCAATCCGGCCGGAAACGCAAAGCTGA
AACCCGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6055:2118..2678+

>mRNA_P-wetherbeei_contig6055.3.1 ID=mRNA_P-wetherbeei_contig6055.3.1|Name=mRNA_P-wetherbeei_contig6055.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig6055:2118..2678+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGTTTTGCCGCGGAGTCTCTGGCGAATGCCCTGGTCGAATATCTT
TCTGAAAGCACTCAAGGACAACGACGTCCGGCTTGTGAGTTACGTGCCGG
ACAATGTGCTGACGCCGCTGATCGCCGGAGTCACCTCCGACAATTATTTC
ATGTCGGTCTGCGCCACCCGCGAGGACGAGGCCATCGGCCTGGCCGCCGG
CGGCTGGATGGGCGGCATGAAGAGTGTGGTGATGATGCAGACGTCGGGCT
TCGCGCTGGTCGCCAATGCGCTGGCCTCGCTCACAGTGCCGTCGCAGATC
CCGACCGTCATGATCATCTCGGAGCGTGGCACGATGGGCGAATTCCAGAT
CGCGCAGACGCTTGTCGCGCGCACCATGCGGCCGGTGCTCGATACGCTCG
GCATCACCCATCACACGCTGACCGACGAAGCCACGCTGCCGTTCATCGTC
GACCGCTCGATCAAGCAGGCGTTCATGACGCAGACGCCTGTGGCTTTTAT
CCTCTCGCCCCTCCTGACCGGCGGCAATCCGGCCGGAAACGCAAAGCTGA
AACCCGCATGA
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