mRNA_P-wetherbeei_contig605.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig605.2.1
Unique NamemRNA_P-wetherbeei_contig605.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig605.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig605contigP-wetherbeei_contig605:1108..1441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size336
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.4085855-UTR-P-wetherbeei_contig605:1107..11201683186885.4085855-UTR-P-wetherbeei_contig605:1107..1120Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig605 1108..1120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.41865-CDS-P-wetherbeei_contig605:1120..14411683186885.41865-CDS-P-wetherbeei_contig605:1120..1441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig605 1121..1441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig605.2.1prot_P-wetherbeei_contig605.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig605 1121..1441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig605.2.1

>prot_P-wetherbeei_contig605.2.1 ID=prot_P-wetherbeei_contig605.2.1|Name=mRNA_P-wetherbeei_contig605.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MLREDVALKRVMLKDRPARAVGGVEAAEADAAALAGRRLSCVSPFADDTS
LALGHGDLDRAVGHLELFAEASGLRVNVDKSALWLFGDDSNGTFRRAVQW
RWQWRQW
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mRNA from alignment at P-wetherbeei_contig605:1108..1441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig605.2.1 ID=mRNA_P-wetherbeei_contig605.2.1|Name=mRNA_P-wetherbeei_contig605.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=334bp|location=Sequence derived from alignment at P-wetherbeei_contig605:1108..1441+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCAGCCAGAGTATGTTGCGAGAGGACGTAGCGCTCAAGAGAGTGATGC
TGAAGGACAGGCCGGCCAGAGCGGTGGGCGGAGTGGAGGCGGCGGAGGCG
GATGCGGCGGCCTTGGCCGGCCGTCGCCTCTCCTGTGTCTCTCCTTTTGC
TGATGACACGTCTTTGGCGCTCGGCCACGGCGACCTGGACCGTGCCGTCG
GCCATCTGGAGCTGTTTGCGGAGGCGTCGGGGCTGCGAGTCAACGTCGAC
AAGTCTGCCCTCTGGCTGTTTGGGGACGACAGCAATGGTACCTTTCGCAG
GGCGGTGCAGTGGCGGTGGCAGTGGCGGCAGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig605:1108..1441+

>mRNA_P-wetherbeei_contig605.2.1 ID=mRNA_P-wetherbeei_contig605.2.1|Name=mRNA_P-wetherbeei_contig605.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig605:1108..1441+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCGAGAGGACGTAGCGCTCAAGAGAGTGATGCTGAAGGACAGGCC
GGCCAGAGCGGTGGGCGGAGTGGAGGCGGCGGAGGCGGATGCGGCGGCCT
TGGCCGGCCGTCGCCTCTCCTGTGTCTCTCCTTTTGCTGATGACACGTCT
TTGGCGCTCGGCCACGGCGACCTGGACCGTGCCGTCGGCCATCTGGAGCT
GTTTGCGGAGGCGTCGGGGCTGCGAGTCAACGTCGACAAGTCTGCCCTCT
GGCTGTTTGGGGACGACAGCAATGGTACCTTTCGCAGGGCGGTGCAGTGG
CGGTGGCAGTGGCGGCAGTGG
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