mRNA_P-wetherbeei_contig6044.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6044.3.1
Unique NamemRNA_P-wetherbeei_contig6044.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6044.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6044contigP-wetherbeei_contig6044:2019..2561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size509
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.107026-CDS-P-wetherbeei_contig6044:2018..22581683186885.107026-CDS-P-wetherbeei_contig6044:2018..2258Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6044 2019..2258 -
1683186885.1202865-CDS-P-wetherbeei_contig6044:2293..24641683186885.1202865-CDS-P-wetherbeei_contig6044:2293..2464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6044 2294..2464 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.138366-UTR-P-wetherbeei_contig6044:2464..25611683186885.138366-UTR-P-wetherbeei_contig6044:2464..2561Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6044 2465..2561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6044.3.1prot_P-wetherbeei_contig6044.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6044 2019..2464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6044.3.1

>prot_P-wetherbeei_contig6044.3.1 ID=prot_P-wetherbeei_contig6044.3.1|Name=mRNA_P-wetherbeei_contig6044.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MDKTPRAVMVPAGDSASTALAPPVTSAQTGAQSRAPTIRDTRLGAAAGAL
RGDGRACRVHGAVERATAPQAGIAEPCGLLGDYSRMSGLAGAINAAATAA
AAAIAAILQKPAKSRQDACAAHGLEGGNSRGADILAA
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mRNA from alignment at P-wetherbeei_contig6044:2019..2561-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6044.3.1 ID=mRNA_P-wetherbeei_contig6044.3.1|Name=mRNA_P-wetherbeei_contig6044.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig6044:2019..2561- (Phaeothamnion wetherbeei SAG_119_79)
CGAGACGCTCGCGGCGCGGGCGATGACGGCGGCGTAGCCCTGCGCGAGCG
CCGGCACGTCGGTTTTGAGGAATTCCGTTGATGCCGCCGCTGCAATCATG
GACAAGACGCCGAGGGCAGTGATGGTGCCAGCGGGCGACAGCGCGTCGAC
GGCACTGGCGCCGCCCGTCACAAGCGCACAGACGGGCGCCCAGAGCCGTG
CGCCCACCATCCGGGACACTAGGCTCGGGGCCGCCGCTGGCGCGTTGCGT
GGGGACGGCAGAGCTTGCGCAGCTTTCCCGTCGGCTGCCAAGCAGCAGTA
CAGCGCGTACACGGCGCTGTCGAGCGCGCCACGGCTCCGCAGGCCGGCAT
CGCCGAGCCATGCGGCCTCCTCGGCGACTATTCCCGAATGAGCGGGCTTG
CAGGTGCCATTAACGCCGCCGCCACCGCAGCCGCCGCCGCCATCGCAGCA
ATCCTCCAAAAGCCGGCAAAGTCCCGCCAGGACGCATGCGCTGCCCACGG
CCTTGAAGGCGGCAACTCCCGCGGCGCCGATATCCTTGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6044:2019..2561-

>mRNA_P-wetherbeei_contig6044.3.1 ID=mRNA_P-wetherbeei_contig6044.3.1|Name=mRNA_P-wetherbeei_contig6044.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig6044:2019..2561- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAAGACGCCGAGGGCAGTGATGGTGCCAGCGGGCGACAGCGCGTC
GACGGCACTGGCGCCGCCCGTCACAAGCGCACAGACGGGCGCCCAGAGCC
GTGCGCCCACCATCCGGGACACTAGGCTCGGGGCCGCCGCTGGCGCGTTG
CGTGGGGACGGCAGAGCTTGCCGCGTACACGGCGCTGTCGAGCGCGCCAC
GGCTCCGCAGGCCGGCATCGCCGAGCCATGCGGCCTCCTCGGCGACTATT
CCCGAATGAGCGGGCTTGCAGGTGCCATTAACGCCGCCGCCACCGCAGCC
GCCGCCGCCATCGCAGCAATCCTCCAAAAGCCGGCAAAGTCCCGCCAGGA
CGCATGCGCTGCCCACGGCCTTGAAGGCGGCAACTCCCGCGGCGCCGATA
TCCTTGCCGCC
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