mRNA_P-wetherbeei_contig604.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig604.2.1
Unique NamemRNA_P-wetherbeei_contig604.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig604.2.1 vs. uniprot
Match: A0A6H5K892_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K892_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.660e-20
Identity = 106/309 (34.30%), Postives = 151/309 (48.87%), Query Frame = 1 
Query:  781 ALQPLRDALAVSRAEQCSLQSDVTMLHAQRAALDAQEERLWAALADXXXXXXXXXXXRGALLAAVSGEAARADALTSVAPLEDLFPLGRSREGFPTVGGYRLAQGPDDRERLQWSEVAAAWGAAVALVRCVADCTGHRSPRYVAVALGPDTYLIERPAATGVKAGVAATAEGVRHIFSGSGGGGGSTIC-------FGVGSGSXXXXXRSGRKALT----AAIAAFLGWSGEVMAHTAAALAIADHDGSGSRSIRDAVAGDDRDGPPHPQTASGSIGGVQMEGLRGGEAWRNALWMLWRNLKWLQGRAS 1674
            A  P   AL +++     L+ ++  L  QR AL A+    WAAL++              LL A    A  A  L+  + L +LF + R  +GFP++ G+RL + PDD+ RL W+E+ AAWG AV LVRCV++    RS R+  V L   + +IE   A+G  +G  +  +GV     G      +++        F  G G XXXXXRSG         AA+ AFL  S EVMA     +     +G  S      VA  D  G P+ QT   ++GGV +  L+G  +W+  L  L +NL+W  G AS
Sbjct:  423 AASPFAQALRMAQETSVQLRRELRSLETQRGALCARGSEAWAALSELAYARGVLEDECRELLQASREVAENAAHLSERSALSELFSI-RHVDGFPSINGFRLGRAPDDKRRLHWNEINAAWGEAVLLVRCVSNAVDFRSKRFRLVPLNCTSRVIEL--ASGDNSGGRSQEDGVGRRGHGPEPTAATSVVVVCAHDLFSTGGGGXXXXXRSGSGEENLRHLAAVRAFLACSAEVMAFLERRVLERRLEGEVSAGAA-CVAWSDV-GVPYKQTED-AVGGVSIGALKGQGSWKPWLCQLVKNLEWAVGAAS 725
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BLAST of mRNA_P-wetherbeei_contig604.2.1 vs. uniprot
Match: A0A836CKE4_9STRA (APG6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.220e-8
Identity = 109/376 (28.99%), Postives = 146/376 (38.83%), Query Frame = 1 
Query:  181 SCCLCGVAPDMIAG--GRGSLAGGIDDSYVVLPDQQPLLSESYFALPGRRDMANTMVDGDGWMGGSVAQFSHTGLGDAVRRASTLALYAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSICGLKPEPTFCRHCFDAVLESIAEDCDRIGAHAEACRSLLA-CFDASADKPLLAGETDSKRAAAAAEXXXXXXXTAALQPLRDALAVSRAEQCSLQSDVTMLHAQRAALDAQEE--RLWAALADXXXXXXXXXXXRGALLAAVSGEAARADALTSVAPLEDLFPL------------------GRSREGF------PTVGGYRLAQGPDDRERLQWSEVAAAWGAAVALVRCVADCTGHRSPRYVAVAL 1221
            +CC CG A D++    G G    G D+S+VVLP  QP++SESYF  P    +A+ +      + GS+   SH GL   VRR + + L+A                                           P P  CR C +A+L  I ++  R  A   A R   +   D  A  P        + AAAAA           L  LR+ALA +R E   L + +  L A+R A  A+E    L  A A   XXXXXXXXX                       L  +F +                     R GF      P++ G RLA+  DDR  L W+E+AAAWG A      +A+  G  S  +  V L
Sbjct:    4 TCCRCGEA-DLVDDRYGVGMAQRGADESFVVLPPMQPVISESYFGAPASTSVAHELA-----IAGSMVHISHEGLSHHVRRTTRVHLHAFGPRLTPEKQQPEQERQ-------------------------SPRPV-CRQCCEAILRLIDQEARRATADIAAYRIFQSQLLDTCALAP-------GEGAAAAA-------LRGELALLREALATTRQEHDHLAAQLRSL-AEREADAARETVALLKGARAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPPVLATVFRIVCTPAXXXXXXXXXXSTSAPQRFGFGGATAAPSINGLRLARESDDRVHLDWAELAAAWGQAAQAAVAMANAAGFVSRAWRVVPL 332
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig604.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K892_9PHAE2.660e-2034.30APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CKE4_9STRA2.220e-828.99APG6 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig604contigP-wetherbeei_contig604:1599..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3055.EDP09243
PFAMsAPG6
Model size1740
Max annot lvl3041|Chlorophyta
KEGG koko:K08334
KEGG Pathwayko04136,ko04137,ko04138,ko04140,ko04215,ko04371,ko05167,map04136,map04137,map04138,map04140,map04215,map04371,map05167
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.59e-07
EggNOG OGsKOG2751@1|root,KOG2751@2759|Eukaryota,37SZA@33090|Viridiplantae,34JCM@3041|Chlorophyta
Ec32 ortholog descriptionAtg6/Beclin
Ec32 orthologEc-07_006420.1
DescriptionAutophagy protein Apg6
Cds size1596
COG categoryT
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.6871054-CDS-P-wetherbeei_contig604:1598..31941683186884.6871054-CDS-P-wetherbeei_contig604:1598..3194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig604 1599..3194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.7025359-UTR-P-wetherbeei_contig604:3194..33381683186884.7025359-UTR-P-wetherbeei_contig604:3194..3338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig604 3195..3338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig604.2.1prot_P-wetherbeei_contig604.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig604 1599..3194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig604.2.1

>prot_P-wetherbeei_contig604.2.1 ID=prot_P-wetherbeei_contig604.2.1|Name=mRNA_P-wetherbeei_contig604.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=532bp
MWEGRGNVGPFPSCCLCGVAPDMIAGGRGSLAGGIDDSYVVLPDQQPLLS
ESYFALPGRRDMANTMVDGDGWMGGSVAQFSHTGLGDAVRRASTLALYAA
PPSAVAAIASDDSATRERRGAAGAGDGGGGGGGGGSSICGLKPEPTFCRH
CFDAVLESIAEDCDRIGAHAEACRSLLACFDASADKPLLAGETDSKRAAA
AAEAAAAAEATAALQPLRDALAVSRAEQCSLQSDVTMLHAQRAALDAQEE
RLWAALADAQRAALEADDERGALLAAVSGEAARADALTSVAPLEDLFPLG
RSREGFPTVGGYRLAQGPDDRERLQWSEVAAAWGAAVALVRCVADCTGHR
SPRYVAVALGPDTYLIERPAATGVKAGVAATAEGVRHIFSGSGGGGGSTI
CFGVGSGSSGGGGRSGRKALTAAIAAFLGWSGEVMAHTAAALAIADHDGS
GSRSIRDAVAGDDRDGPPHPQTASGSIGGVQMEGLRGGEAWRNALWMLWR
NLKWLQGRASRAAQLAARLPPSGAFVAASGH*
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mRNA from alignment at P-wetherbeei_contig604:1599..3338-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig604.2.1 ID=mRNA_P-wetherbeei_contig604.2.1|Name=mRNA_P-wetherbeei_contig604.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1740bp|location=Sequence derived from alignment at P-wetherbeei_contig604:1599..3338- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAGAACGAAAGGGGAAGAAGGAAGAACTCGTCCGTGATTTTAGCAGC
TGGCCTTGGCGTAGTCGGATGATCACCTCTGCGTTCTGCCATCAAATCTC
GGGCTCACGATCGAAAAAAGTATCCATCGAAATCCAGAAGCGAAATGTGG
GAGGGCCGCGGAAACGTAGGCCCCTTTCCTTCATGTTGTTTATGCGGAGT
AGCTCCTGATATGATCGCCGGAGGCCGAGGATCGCTCGCAGGGGGCATCG
ACGACTCATATGTCGTCCTGCCCGACCAACAGCCCCTGCTCTCGGAGAGC
TACTTTGCGCTGCCCGGCCGCCGCGACATGGCCAACACGATGGTCGATGG
AGACGGCTGGATGGGTGGAAGCGTTGCCCAGTTCAGCCACACGGGCCTCG
GCGACGCCGTGCGACGCGCATCGACGCTGGCACTTTATGCAGCCCCACCT
TCCGCCGTCGCCGCCATTGCCAGCGACGACTCTGCGACCAGAGAACGACG
AGGCGCGGCTGGTGCTGGCGATGGTGGCGGTGGTGGCGGCGGCGGCGGCT
CGTCCATCTGTGGGTTAAAGCCGGAGCCGACGTTTTGCCGCCATTGCTTC
GACGCGGTGCTCGAGTCCATCGCCGAGGACTGCGACCGCATCGGTGCCCA
TGCCGAAGCGTGCCGCAGCCTGCTGGCCTGCTTCGATGCCAGCGCCGACA
AGCCGTTGCTGGCGGGCGAAACTGATTCGAAACGTGCCGCTGCGGCGGCG
GAAGCAGCTGCCGCAGCCGAAGCCACCGCCGCACTCCAGCCGCTTCGGGA
CGCGCTGGCCGTGTCGCGGGCGGAGCAGTGCTCCCTCCAGAGCGACGTGA
CAATGCTGCACGCACAGCGGGCGGCGCTCGACGCGCAGGAGGAGCGGCTG
TGGGCCGCGCTTGCCGACGCGCAGCGCGCGGCGCTCGAGGCGGATGACGA
GCGCGGTGCGCTGCTGGCCGCCGTCTCCGGCGAGGCGGCCCGAGCCGACG
CGCTGACGAGCGTGGCGCCGCTGGAAGACTTGTTTCCGCTCGGCCGGAGC
CGGGAGGGCTTTCCGACCGTCGGCGGCTACCGCCTGGCGCAAGGGCCGGA
CGACCGCGAGCGGCTGCAGTGGTCGGAAGTGGCGGCGGCGTGGGGGGCGG
CTGTGGCGCTGGTGCGCTGCGTCGCGGACTGCACGGGACACCGCTCCCCG
CGCTACGTGGCGGTGGCGCTCGGACCCGACACGTACCTCATCGAACGACC
GGCGGCGACGGGGGTGAAGGCGGGGGTGGCAGCGACTGCAGAAGGCGTCA
GGCACATCTTCAGCGGCAGTGGTGGCGGCGGCGGGAGCACCATATGCTTT
GGCGTCGGCAGCGGTAGCAGCGGCGGCGGCGGCAGAAGCGGCCGCAAAGC
CTTGACTGCCGCCATTGCGGCGTTCCTGGGCTGGAGCGGTGAGGTGATGG
CGCATACAGCGGCGGCCCTCGCCATCGCAGATCACGACGGCAGCGGCAGT
CGAAGCATTCGTGACGCCGTCGCCGGCGATGATCGCGACGGCCCACCACA
CCCGCAGACGGCGAGCGGCAGCATCGGCGGGGTGCAGATGGAAGGGCTGC
GCGGCGGTGAGGCGTGGCGAAACGCCTTGTGGATGTTGTGGAGGAACCTT
AAATGGCTGCAAGGTCGCGCAAGTCGCGCTGCGCAGCTCGCGGCGCGATT
GCCGCCGTCAGGCGCTTTTGTCGCTGCATCAGGGCATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig604:1599..3338-

>mRNA_P-wetherbeei_contig604.2.1 ID=mRNA_P-wetherbeei_contig604.2.1|Name=mRNA_P-wetherbeei_contig604.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1596bp|location=Sequence derived from alignment at P-wetherbeei_contig604:1599..3338- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGAGGGCCGCGGAAACGTAGGCCCCTTTCCTTCATGTTGTTTATG
CGGAGTAGCTCCTGATATGATCGCCGGAGGCCGAGGATCGCTCGCAGGGG
GCATCGACGACTCATATGTCGTCCTGCCCGACCAACAGCCCCTGCTCTCG
GAGAGCTACTTTGCGCTGCCCGGCCGCCGCGACATGGCCAACACGATGGT
CGATGGAGACGGCTGGATGGGTGGAAGCGTTGCCCAGTTCAGCCACACGG
GCCTCGGCGACGCCGTGCGACGCGCATCGACGCTGGCACTTTATGCAGCC
CCACCTTCCGCCGTCGCCGCCATTGCCAGCGACGACTCTGCGACCAGAGA
ACGACGAGGCGCGGCTGGTGCTGGCGATGGTGGCGGTGGTGGCGGCGGCG
GCGGCTCGTCCATCTGTGGGTTAAAGCCGGAGCCGACGTTTTGCCGCCAT
TGCTTCGACGCGGTGCTCGAGTCCATCGCCGAGGACTGCGACCGCATCGG
TGCCCATGCCGAAGCGTGCCGCAGCCTGCTGGCCTGCTTCGATGCCAGCG
CCGACAAGCCGTTGCTGGCGGGCGAAACTGATTCGAAACGTGCCGCTGCG
GCGGCGGAAGCAGCTGCCGCAGCCGAAGCCACCGCCGCACTCCAGCCGCT
TCGGGACGCGCTGGCCGTGTCGCGGGCGGAGCAGTGCTCCCTCCAGAGCG
ACGTGACAATGCTGCACGCACAGCGGGCGGCGCTCGACGCGCAGGAGGAG
CGGCTGTGGGCCGCGCTTGCCGACGCGCAGCGCGCGGCGCTCGAGGCGGA
TGACGAGCGCGGTGCGCTGCTGGCCGCCGTCTCCGGCGAGGCGGCCCGAG
CCGACGCGCTGACGAGCGTGGCGCCGCTGGAAGACTTGTTTCCGCTCGGC
CGGAGCCGGGAGGGCTTTCCGACCGTCGGCGGCTACCGCCTGGCGCAAGG
GCCGGACGACCGCGAGCGGCTGCAGTGGTCGGAAGTGGCGGCGGCGTGGG
GGGCGGCTGTGGCGCTGGTGCGCTGCGTCGCGGACTGCACGGGACACCGC
TCCCCGCGCTACGTGGCGGTGGCGCTCGGACCCGACACGTACCTCATCGA
ACGACCGGCGGCGACGGGGGTGAAGGCGGGGGTGGCAGCGACTGCAGAAG
GCGTCAGGCACATCTTCAGCGGCAGTGGTGGCGGCGGCGGGAGCACCATA
TGCTTTGGCGTCGGCAGCGGTAGCAGCGGCGGCGGCGGCAGAAGCGGCCG
CAAAGCCTTGACTGCCGCCATTGCGGCGTTCCTGGGCTGGAGCGGTGAGG
TGATGGCGCATACAGCGGCGGCCCTCGCCATCGCAGATCACGACGGCAGC
GGCAGTCGAAGCATTCGTGACGCCGTCGCCGGCGATGATCGCGACGGCCC
ACCACACCCGCAGACGGCGAGCGGCAGCATCGGCGGGGTGCAGATGGAAG
GGCTGCGCGGCGGTGAGGCGTGGCGAAACGCCTTGTGGATGTTGTGGAGG
AACCTTAAATGGCTGCAAGGTCGCGCAAGTCGCGCTGCGCAGCTCGCGGC
GCGATTGCCGCCGTCAGGCGCTTTTGTCGCTGCATCAGGGCATTAA
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