mRNA_P-wetherbeei_contig6030.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: D8LBL5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL5_ECTSI) HSP 1 Score: 140 bits (354), Expect = 2.340e-35 Identity = 79/177 (44.63%), Postives = 105/177 (59.32%), Query Frame = 1
Query: 1 HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETN-AAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGNPGVAAAEERRFLVALERRTL-PAVVSHEPLVGLRLCGWGFVAEDSFE 525
H S++ L L CGL L+ +V+ AH +RR+ W+ GLR+ + AAAAP ++ GCL +D S+NRLGDAG A+AR L++D+WL+G++LA+N I G L L NA+LCALVLDGNP V ERR LE R++ P V EP V L L WGF A +
Sbjct: 233 HPSLVALSLRGCGLVGEASGRLVSSVLRAHAARREGLVWSAGLRRPTGVVGHTAAAAPARISTAGCLAVDLSDNRLGDAGVHAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVD 409
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A6H5K7P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P8_9PHAE) HSP 1 Score: 140 bits (352), Expect = 5.980e-35 Identity = 79/177 (44.63%), Postives = 104/177 (58.76%), Query Frame = 1
Query: 1 HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETN-AAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGNPGVAAAEERRFLVALERRTL-PAVVSHEPLVGLRLCGWGFVAEDSFE 525
H S++ L L CGL L+ +V+ AH +RR+ W+ GLR+ + AAAAP ++ GCL +D S+NRLGD G A+AR L++D+WLVG++LA+N I G L L NA+LCALVLDGNP V ERR LE R++ P V EP V L L WGF A +
Sbjct: 263 HPSLVALSLRGCGLVGEASGRLVASVLRAHAARREGLVWSSGLRRPTGVVGHTAAAAPARISTAGCLAVDLSDNRLGDTGVHAVARGLQSDTWLVGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVD 439
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A835YYM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM4_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.370e-25 Identity = 63/169 (37.28%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 1 HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGNPGVAAAEERRFLVALERRTLPAVVSHEPLVGLRLCGWGFV 507
H + L L +C +R GA ++ AV+ AH +RRD +W+ GLR+ +AAP +A G L +D S NRLGDAGA +ARAL D+WLV LSLA + L+ L N LC ++L+ NP ++ A L R +P + V L WGF+
Sbjct: 246 HPRIAALALPNCNVRGADGARIVGAVIRAHSNRRDGLSWSAGLRRARPRGAATSAAPAALARAGLLSLDVSRNRLGDAGAAELARALRGDAWLVALSLAATGLSDDAAAALQECLSVNQELCLVLLEHNPRLSPAAIAALDATLHERIVPRAAVEDAAVAATLDSWGFI 414
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: K3W6K8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6K8_GLOUD) HSP 1 Score: 63.2 bits (152), Expect = 1.640e-8 Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 19 LGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQ-NASLCALVL 378
L L C L D +D + ++ HG +D W+ LR E+ +A A R L++D S+N LGD A A+ AL D WL+GL+L +N I R G+ L L Q N +L ALV+
Sbjct: 43 LNLTGCHLTD-KASDHISKIITLHGVLKDEDVWSSSLRG----ESVSAVASR-----PALLLDLSQNALGDESAQALCNALYHDKWLLGLNLGQNRISRNGITLLIDTLTQSNRTLAALVV 153
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A5D6XZA1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZA1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.270e-7 Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 1
Query: 19 LGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVL 378
L L C L + D + ++ HG+ +D W+ LR E AA R L++D S+N LGD A AI AL D WL+GL+L++N + R GV L L Q+ A+VL
Sbjct: 243 LSLAGCRLTN-KARDHIAKIITLHGTLKDESVWSSSLRG----EAAGVAATR-----PSLLLDLSQNALGDDAAEAICNALYHDKWLLGLNLSQNRVSRSGVARLTETLSQSNRTLAVVL 352
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A1V9YYF4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYF4_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.380e-7 Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 1
Query: 19 LGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGN 387
L L +C L D A + ++ RRD W+ LR + P V GC++++ S+N+LGDA + +AL D+WL GL+L +N IG RGV L AL N++L L+L+ N
Sbjct: 532 LNLTNCLLNDA-SARAISRILRVQCQRRDEVYWSSTLRGQI--------IP--VQGEGCMLLNLSKNKLGDATTEILCQALYNDNWLYGLNLNENDIGPRGVLNLAEALQTNSTLTVLLLEDN 643 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6030.1.1 >prot_P-wetherbeei_contig6030.1.1 ID=prot_P-wetherbeei_contig6030.1.1|Name=mRNA_P-wetherbeei_contig6030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYEback to top mRNA from alignment at P-wetherbeei_contig6030:5..580+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6030.1.1 ID=mRNA_P-wetherbeei_contig6030.1.1|Name=mRNA_P-wetherbeei_contig6030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig6030:5..580+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6030:5..580+ >mRNA_P-wetherbeei_contig6030.1.1 ID=mRNA_P-wetherbeei_contig6030.1.1|Name=mRNA_P-wetherbeei_contig6030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig6030:5..580+ (Phaeothamnion wetherbeei SAG_119_79)back to top |