mRNA_P-wetherbeei_contig6030.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6030.1.1
Unique NamemRNA_P-wetherbeei_contig6030.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: D8LBL5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.340e-35
Identity = 79/177 (44.63%), Postives = 105/177 (59.32%), Query Frame = 1
Query:    1 HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETN-AAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGNPGVAAAEERRFLVALERRTL-PAVVSHEPLVGLRLCGWGFVAEDSFE 525
            H S++ L L  CGL       L+ +V+ AH +RR+   W+ GLR+      + AAAAP  ++  GCL +D S+NRLGDAG  A+AR L++D+WL+G++LA+N I   G   L   L  NA+LCALVLDGNP V    ERR    LE R++ P  V  EP V L L  WGF A    +
Sbjct:  233 HPSLVALSLRGCGLVGEASGRLVSSVLRAHAARREGLVWSAGLRRPTGVVGHTAAAAPARISTAGCLAVDLSDNRLGDAGVHAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVD 409          
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A6H5K7P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.980e-35
Identity = 79/177 (44.63%), Postives = 104/177 (58.76%), Query Frame = 1
Query:    1 HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETN-AAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGNPGVAAAEERRFLVALERRTL-PAVVSHEPLVGLRLCGWGFVAEDSFE 525
            H S++ L L  CGL       L+ +V+ AH +RR+   W+ GLR+      + AAAAP  ++  GCL +D S+NRLGD G  A+AR L++D+WLVG++LA+N I   G   L   L  NA+LCALVLDGNP V    ERR    LE R++ P  V  EP V L L  WGF A    +
Sbjct:  263 HPSLVALSLRGCGLVGEASGRLVASVLRAHAARREGLVWSSGLRRPTGVVGHTAAAAPARISTAGCLAVDLSDNRLGDTGVHAVARGLQSDTWLVGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVD 439          
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A835YYM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.370e-25
Identity = 63/169 (37.28%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    1 HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGNPGVAAAEERRFLVALERRTLPAVVSHEPLVGLRLCGWGFV 507
            H  +  L L +C +R   GA ++ AV+ AH +RRD  +W+ GLR+        +AAP  +A  G L +D S NRLGDAGA  +ARAL  D+WLV LSLA   +       L+  L  N  LC ++L+ NP ++ A        L  R +P     +  V   L  WGF+
Sbjct:  246 HPRIAALALPNCNVRGADGARIVGAVIRAHSNRRDGLSWSAGLRRARPRGAATSAAPAALARAGLLSLDVSRNRLGDAGAAELARALRGDAWLVALSLAATGLSDDAAAALQECLSVNQELCLVLLEHNPRLSPAAIAALDATLHERIVPRAAVEDAAVAATLDSWGFI 414          
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: K3W6K8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6K8_GLOUD)

HSP 1 Score: 63.2 bits (152), Expect = 1.640e-8
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   19 LGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQ-NASLCALVL 378
            L L  C L D   +D +  ++  HG  +D   W+  LR     E+ +A A R       L++D S+N LGD  A A+  AL  D WL+GL+L +N I R G+  L   L Q N +L ALV+
Sbjct:   43 LNLTGCHLTD-KASDHISKIITLHGVLKDEDVWSSSLRG----ESVSAVASR-----PALLLDLSQNALGDESAQALCNALYHDKWLLGLNLGQNRISRNGITLLIDTLTQSNRTLAALVV 153          
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A5D6XZA1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZA1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-7
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   19 LGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVL 378
            L L  C L +    D +  ++  HG+ +D   W+  LR     E    AA R       L++D S+N LGD  A AI  AL  D WL+GL+L++N + R GV  L   L Q+    A+VL
Sbjct:  243 LSLAGCRLTN-KARDHIAKIITLHGTLKDESVWSSSLRG----EAAGVAATR-----PSLLLDLSQNALGDDAAEAICNALYHDKWLLGLNLSQNRVSRSGVARLTETLSQSNRTLAVVL 352          
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Match: A0A1V9YYF4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYF4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.380e-7
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 1
Query:   19 LGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYETNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAKNSIGRRGVGCLEAALVQNASLCALVLDGN 387
            L L +C L D   A  +  ++     RRD   W+  LR +          P  V   GC++++ S+N+LGDA    + +AL  D+WL GL+L +N IG RGV  L  AL  N++L  L+L+ N
Sbjct:  532 LNLTNCLLNDA-SARAISRILRVQCQRRDEVYWSSTLRGQI--------IP--VQGEGCMLLNLSKNKLGDATTEILCQALYNDNWLYGLNLNENDIGPRGVLNLAEALQTNSTLTVLLLEDN 643          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6030.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBL5_ECTSI2.340e-3544.63Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K7P8_9PHAE5.980e-3544.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYM4_9STRA1.370e-2537.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3W6K8_GLOUD1.640e-837.19Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XZA1_9STRA1.270e-735.83Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9YYF4_9STRA1.380e-735.77Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6030contigP-wetherbeei_contig6030:5..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBL5
PFAMsDeath,LRR_6,NACHT
Model size576
Max annot lvl2759|Eukaryota
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.84e-36
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size576
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.0852098-CDS-P-wetherbeei_contig6030:4..5801683186884.0852098-CDS-P-wetherbeei_contig6030:4..580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6030 5..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6030.1.1prot_P-wetherbeei_contig6030.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6030 5..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6030.1.1

>prot_P-wetherbeei_contig6030.1.1 ID=prot_P-wetherbeei_contig6030.1.1|Name=mRNA_P-wetherbeei_contig6030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
HASVICLGLISCGLRDGPGADLLCAVVAAHGSRRDSKTWAVGLRKRFSYE
TNAAAAPRGVAVMGCLIIDASENRLGDAGACAIARALETDSWLVGLSLAK
NSIGRRGVGCLEAALVQNASLCALVLDGNPGVAAAEERRFLVALERRTLP
AVVSHEPLVGLRLCGWGFVAEDSFEATGDDGAAAGDGAVAAD
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mRNA from alignment at P-wetherbeei_contig6030:5..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6030.1.1 ID=mRNA_P-wetherbeei_contig6030.1.1|Name=mRNA_P-wetherbeei_contig6030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig6030:5..580+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCCTCCGTCATCTGCCTCGGGCTGATCTCCTGTGGGCTCCGCGACGG GCCCGGTGCGGACCTGCTTTGCGCCGTTGTCGCCGCCCACGGGAGCCGCC GCGACTCCAAGACGTGGGCAGTCGGCCTCCGAAAACGCTTCAGCTACGAG ACCAACGCCGCCGCGGCCCCACGCGGCGTGGCGGTGATGGGCTGCCTCAT TATTGACGCCTCAGAGAACCGTCTCGGCGATGCCGGCGCCTGCGCCATCG CCCGCGCGCTTGAAACGGACTCCTGGCTCGTCGGGCTCAGTCTGGCGAAG AACAGCATTGGGCGGCGCGGCGTCGGGTGCCTGGAGGCGGCGCTGGTGCA GAATGCGTCGCTGTGCGCGCTGGTACTGGACGGCAATCCCGGCGTGGCGG CAGCGGAGGAGCGGCGCTTCCTGGTGGCGCTCGAACGACGGACGTTACCG GCGGTCGTGTCGCACGAGCCGCTGGTCGGGCTCCGCCTCTGCGGCTGGGG CTTCGTGGCAGAAGACAGCTTCGAGGCGACAGGGGATGATGGTGCTGCTG CTGGCGACGGTGCTGTTGCCGCGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6030:5..580+

>mRNA_P-wetherbeei_contig6030.1.1 ID=mRNA_P-wetherbeei_contig6030.1.1|Name=mRNA_P-wetherbeei_contig6030.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig6030:5..580+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCCTCCGTCATCTGCCTCGGGCTGATCTCCTGTGGGCTCCGCGACGG
GCCCGGTGCGGACCTGCTTTGCGCCGTTGTCGCCGCCCACGGGAGCCGCC
GCGACTCCAAGACGTGGGCAGTCGGCCTCCGAAAACGCTTCAGCTACGAG
ACCAACGCCGCCGCGGCCCCACGCGGCGTGGCGGTGATGGGCTGCCTCAT
TATTGACGCCTCAGAGAACCGTCTCGGCGATGCCGGCGCCTGCGCCATCG
CCCGCGCGCTTGAAACGGACTCCTGGCTCGTCGGGCTCAGTCTGGCGAAG
AACAGCATTGGGCGGCGCGGCGTCGGGTGCCTGGAGGCGGCGCTGGTGCA
GAATGCGTCGCTGTGCGCGCTGGTACTGGACGGCAATCCCGGCGTGGCGG
CAGCGGAGGAGCGGCGCTTCCTGGTGGCGCTCGAACGACGGACGTTACCG
GCGGTCGTGTCGCACGAGCCGCTGGTCGGGCTCCGCCTCTGCGGCTGGGG
CTTCGTGGCAGAAGACAGCTTCGAGGCGACAGGGGATGATGGTGCTGCTG
CTGGCGACGGTGCTGTTGCCGCGGAT
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