mRNA_P-wetherbeei_contig603.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig603.4.1
Unique NamemRNA_P-wetherbeei_contig603.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig603.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig603contigP-wetherbeei_contig603:7138..9171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_11695T0
Model size1573
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.35e-09
EggNOG OGs2D1XK@1|root,2SJPS@2759|Eukaryota,3QGQB@4776|Peronosporales
Cds size1572
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.0348186-CDS-P-wetherbeei_contig603:7137..74751683186884.0348186-CDS-P-wetherbeei_contig603:7137..7475Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig603 7138..7475 -
1683186884.0443773-CDS-P-wetherbeei_contig603:7743..79391683186884.0443773-CDS-P-wetherbeei_contig603:7743..7939Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig603 7744..7939 -
1683186884.0549943-CDS-P-wetherbeei_contig603:8133..91711683186884.0549943-CDS-P-wetherbeei_contig603:8133..9171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig603 8134..9171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig603.4.1prot_P-wetherbeei_contig603.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig603 7138..9171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig603.4.1

>prot_P-wetherbeei_contig603.4.1 ID=prot_P-wetherbeei_contig603.4.1|Name=mRNA_P-wetherbeei_contig603.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=524bp
LQSAGSCQRPALVGGVDSFATEGFSVSHPRRPSPSFLPMQSQVLGFRHNA
TGFQYCGQQQQLQQQQPPRQMFSEWPRDVPPPIEQPTLLVNRGPQETAAA
VVPSIRAAVNAAIRGGSAQRGATVVIGSTLYTVDDWTDPPEQRNDFGGGA
AGDLLPQRRSREGGGNDYYHAMRVSELRQLCRDRGITIGNRGTKSGLIGL
IEENDAASIDAGAVREGIITGGRSGGGSASTGGSSIDGVRRSGDEGMGGQ
GSGGRRGGRGRADGRRHGQRGAAVSGGGRGPRAPSPAAPRQTLNCRLRLL
SILMGEDHRDAFLRHELRATREELDAGAVGARSDFWRQIGASFRNAATNV
GGNPGDRMLYDSVDLGSFGEHSDEKLREMWATLRRNYNAMLNRNRTSGNH
ANMADFARGPTGSRNDEVANLWFYDWVTIRGDNDAMASFVATCMSDGVDL
GEGDGQVHVGPWGGRHRRSGSSSGALSAGCGGGSGSSVADMLREAGDVEV
DRWTGEVNPEQARGRNQRAGSRGG
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mRNA from alignment at P-wetherbeei_contig603:7138..9171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig603.4.1 ID=mRNA_P-wetherbeei_contig603.4.1|Name=mRNA_P-wetherbeei_contig603.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2034bp|location=Sequence derived from alignment at P-wetherbeei_contig603:7138..9171- (Phaeothamnion wetherbeei SAG_119_79)
CTCCAGTCTGCGGGATCCTGTCAAAGGCCGGCGCTTGTTGGTGGCGTCGA
TTCCTTTGCGACTGAGGGTTTCTCTGTATCTCATCCTCGACGGCCGTCGC
CGTCGTTCCTCCCAATGCAAAGCCAAGTGCTGGGCTTTCGCCACAACGCG
ACGGGATTCCAATACTGTGGGCAACAGCAGCAGCTCCAGCAGCAGCAACC
TCCGCGGCAGATGTTCTCCGAATGGCCTCGAGACGTGCCGCCTCCGATTG
AGCAACCAACTCTGCTCGTCAATCGCGGCCCGCAAGAAACGGCTGCCGCG
GTAGTGCCTTCGATCCGCGCAGCTGTCAATGCCGCGATTCGCGGTGGCAG
TGCCCAGCGCGGCGCCACCGTCGTCATTGGCTCGACGCTCTATACCGTCG
ATGACTGGACGGACCCGCCAGAGCAGCGCAACGACTTCGGCGGAGGTGCT
GCTGGTGATTTGCTGCCGCAGCGGCGTTCTCGCGAAGGTGGCGGCAACGA
TTATTACCACGCCATGAGGGTTTCCGAGCTTCGGCAACTGTGCAGAGACC
GTGGGATTACTATCGGTAACAGAGGGACAAAATCTGGACTTATTGGTCTC
ATCGAAGAGAACGACGCGGCGTCCATTGACGCAGGCGCTGTTCGTGAGGG
CATCATCACGGGCGGTAGAAGCGGCGGCGGCAGCGCTAGCACAGGGGGCA
GCAGCATCGATGGCGTGAGAAGGAGCGGTGATGAAGGGATGGGCGGTCAG
GGCAGCGGCGGTCGGAGAGGCGGCCGCGGTCGGGCCGACGGTCGCCGCCA
CGGCCAACGTGGTGCTGCCGTCAGTGGTGGCGGCCGTGGACCACGAGCTC
CGTCTCCTGCTGCTCCAAGGCAGACGCTCAACTGCCGTCTTCGGCTCCTC
AGCATTTTGATGGGCGAAGACCATCGGGACGCTTTTCTGCGCCATGAACT
TCGTGCAACCCGGGAGGAATTGGACGCCGGGGCGGTCGGAGCACGTAGCG
ACTTTTGGAGACAAATTGGTGCAAGCTTCAGAAATGCGGTACGAGCGCTA
GAAGGGTCGTTCTGGAAAGGGGTTTGCTTTTACTTCTTTCTCTGTGCTGG
CGTTTGGGTTTGTTACTACTGTCAGGCTTCCGACAAGGTGCCCACGCATT
GCTTAATGCTCATTTGCTTCACCTGGCATTGCTGGGTGCGCGCATTCTTT
TTATCGACATTAACCCACTCCGGAAAAAGCAGGCGACGAACGTGGGCGGC
AACCCGGGAGACCGCATGCTCTACGACAGCGTGGACCTCGGCAGCTTTGG
GGAGCATTCGGACGAGAAGTTGCGCGAGATGTGGGCAACATTGCGTAGGA
ATTATAACGCCATGCTCAACCGCAACCGCACCTCTGGCAACCACGCCAAC
ATGGCGGATTTCGCGCGGGGACCAACCGGTGCGTGATCTGGCAGCGAGGC
GTGCCCTTTTGTCGGGGTGTATATATTGCCGTTTCTATGCAGTACTTTCT
TCCTTTTTTGGAAGTGTCGTTACAGCATACTAACACGCGTCCTTTCAGCA
AACAAAGTGTTTTGCGAAGCGGAATTGGTACCCTGCCCTTTTTTGGTGTT
CCTTTTCGGTCATCATCGTCCTTCTTAAACCGCGTTGAAATTCGTTGACG
CCTCTTTTGTTCTGTTGTATTCTTTCTACATGGCGCTGCAAGACAGGGTC
GCGGAACGACGAGGTGGCAAACCTCTGGTTCTACGACTGGGTAACCATCC
GGGGCGACAATGACGCCATGGCCAGCTTCGTGGCGACATGCATGTCGGAC
GGCGTCGACCTTGGTGAGGGCGATGGCCAGGTACACGTTGGGCCGTGGGG
AGGTCGCCACCGGCGCAGTGGGAGTAGCAGCGGCGCTTTATCTGCCGGTT
GCGGCGGCGGCAGCGGTAGCAGTGTTGCCGACATGCTCCGAGAGGCGGGC
GATGTGGAGGTTGACCGCTGGACGGGGGAAGTGAACCCAGAACAGGCACG
CGGCAGGAATCAGCGGGCAGGGAGCAGAGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig603:7138..9171-

>mRNA_P-wetherbeei_contig603.4.1 ID=mRNA_P-wetherbeei_contig603.4.1|Name=mRNA_P-wetherbeei_contig603.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1572bp|location=Sequence derived from alignment at P-wetherbeei_contig603:7138..9171- (Phaeothamnion wetherbeei SAG_119_79)
CTCCAGTCTGCGGGATCCTGTCAAAGGCCGGCGCTTGTTGGTGGCGTCGA
TTCCTTTGCGACTGAGGGTTTCTCTGTATCTCATCCTCGACGGCCGTCGC
CGTCGTTCCTCCCAATGCAAAGCCAAGTGCTGGGCTTTCGCCACAACGCG
ACGGGATTCCAATACTGTGGGCAACAGCAGCAGCTCCAGCAGCAGCAACC
TCCGCGGCAGATGTTCTCCGAATGGCCTCGAGACGTGCCGCCTCCGATTG
AGCAACCAACTCTGCTCGTCAATCGCGGCCCGCAAGAAACGGCTGCCGCG
GTAGTGCCTTCGATCCGCGCAGCTGTCAATGCCGCGATTCGCGGTGGCAG
TGCCCAGCGCGGCGCCACCGTCGTCATTGGCTCGACGCTCTATACCGTCG
ATGACTGGACGGACCCGCCAGAGCAGCGCAACGACTTCGGCGGAGGTGCT
GCTGGTGATTTGCTGCCGCAGCGGCGTTCTCGCGAAGGTGGCGGCAACGA
TTATTACCACGCCATGAGGGTTTCCGAGCTTCGGCAACTGTGCAGAGACC
GTGGGATTACTATCGGTAACAGAGGGACAAAATCTGGACTTATTGGTCTC
ATCGAAGAGAACGACGCGGCGTCCATTGACGCAGGCGCTGTTCGTGAGGG
CATCATCACGGGCGGTAGAAGCGGCGGCGGCAGCGCTAGCACAGGGGGCA
GCAGCATCGATGGCGTGAGAAGGAGCGGTGATGAAGGGATGGGCGGTCAG
GGCAGCGGCGGTCGGAGAGGCGGCCGCGGTCGGGCCGACGGTCGCCGCCA
CGGCCAACGTGGTGCTGCCGTCAGTGGTGGCGGCCGTGGACCACGAGCTC
CGTCTCCTGCTGCTCCAAGGCAGACGCTCAACTGCCGTCTTCGGCTCCTC
AGCATTTTGATGGGCGAAGACCATCGGGACGCTTTTCTGCGCCATGAACT
TCGTGCAACCCGGGAGGAATTGGACGCCGGGGCGGTCGGAGCACGTAGCG
ACTTTTGGAGACAAATTGGTGCAAGCTTCAGAAATGCGGCGACGAACGTG
GGCGGCAACCCGGGAGACCGCATGCTCTACGACAGCGTGGACCTCGGCAG
CTTTGGGGAGCATTCGGACGAGAAGTTGCGCGAGATGTGGGCAACATTGC
GTAGGAATTATAACGCCATGCTCAACCGCAACCGCACCTCTGGCAACCAC
GCCAACATGGCGGATTTCGCGCGGGGACCAACCGGGTCGCGGAACGACGA
GGTGGCAAACCTCTGGTTCTACGACTGGGTAACCATCCGGGGCGACAATG
ACGCCATGGCCAGCTTCGTGGCGACATGCATGTCGGACGGCGTCGACCTT
GGTGAGGGCGATGGCCAGGTACACGTTGGGCCGTGGGGAGGTCGCCACCG
GCGCAGTGGGAGTAGCAGCGGCGCTTTATCTGCCGGTTGCGGCGGCGGCA
GCGGTAGCAGTGTTGCCGACATGCTCCGAGAGGCGGGCGATGTGGAGGTT
GACCGCTGGACGGGGGAAGTGAACCCAGAACAGGCACGCGGCAGGAATCA
GCGGGCAGGGAGCAGAGGCGGC
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