mRNA_P-wetherbeei_contig6002.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig6002.3.1
Unique Name	mRNA_P-wetherbeei_contig6002.3.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7TAL4_9STRA (Putative polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAL4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.230e-29
Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ AIY+R LL  LG  Q  PT+I EDNQA IA+++  I+  H RT+H+HVRY FV+E+V S EVELVY+ T +QLAD+LTK L
Sbjct:  111 VALSSAESELISACSATQTAIYIRQLLMDLGSKQDEPTMIMEDNQACIAMSNNPIK--HKRTKHIHVRYHFVREKVESKEVELVYIPTQHQLADILTKPL 208

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7SYU7_9STRA (Putative polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYU7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.790e-27
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+ +  I   H RT+H+ VRY FV+E+V S EVELVY+ T +QLAD+LTK L
Sbjct:   23 VALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIMEDNQACIAMGNNPIT--HKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPL 120

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7U3E4_9STRA (Copia-type polyprotein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3E4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.380e-27
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+++  I   H RT+H+ +RY FV+E+  S EVELVY+ T +QLAD+LTK L
Sbjct:   98 VALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIMEDNQACIAMSNNPIT--HKRTKHIDIRYHFVREKAESKEVELVYIPTQHQLADILTKPL 195

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.110e-26
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+ +  I   H RT+H+ VRY FV+E+V S EVELVY+ T +QLAD+LTK+L
Sbjct:  897 VALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIMEDNQACIAMGNNPIT--HKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKSL 994

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.060e-25
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+ +  I   H RT+H+ VRY FV+E+V S EVELVY+ T +QLAD+LTK L
Sbjct:  599 VALSSAESELISACSATQNAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPIT--HKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPL 696

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7TF74_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF74_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.140e-25
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+++  I   H RT+H+ VR+ FV+ +V S EVELVY+ T +QLAD+LTK L
Sbjct:  194 VALSSAESELISACSATQSAVYIRQLLMDLGFKQDKPTVIMEDNQACIAMSNNPIT--HKRTKHIDVRFHFVRGKVESKEVELVYIPTQHQLADILTKPL 291

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.280e-25
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+++  I Q   RT+H+ VRY FV+E+V S EVELVY+ T +QLAD+LTK L
Sbjct:  600 VALSSAESELISACSATQSAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMSNNPIIQ--KRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPL 697

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.370e-25
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+ +  I   H +T+H+ VRY FV+E+V S EVELVY+ T +QLAD+LTK L
Sbjct:  608 VALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIVEDNQACIAMGNNPIT--HKKTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPL 705

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: W7T201_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T201_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.110e-25
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSS E+E ++ACSATQ A+Y+R LL  LG  Q  PT+I EDNQA IA+++  I Q   RT+H+ VRY FV+E V S EVELVY+ T +QLAD+LTK L
Sbjct:  278 VALSSAESELISACSATQSAVYIRQLLMDLGFKQGEPTVIMEDNQACIAMSNNQIIQ--KRTKHIDVRYHFVREEVESKEVELVYIPTQHQLADILTKPL 375

[Close]

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Match: A0A6G0SFH2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SFH2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.640e-24
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:    1 VALSSTEAEYMAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHPRTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL 300
            VALSSTEAEYMA     +E I++R LL+ +G  Q   T+I+EDNQ A+ALA+    Q H  T+H+ +RY F++E+V S+EVEL Y+ T NQLAD +TK L
Sbjct:   45 VALSSTEAEYMALSDCVKECIWMRRLLKDIGADQVGATVIYEDNQGAMALANNVDYQAH--TKHIDIRYHFIREKVVSNEVELEYMDTKNQLADFMTKGL 142

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6002.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
W7TAL4_9STRA	8.230e-29	61.00	Putative polyprotein n=1 Tax=Nannochloropsis gadit...	[more]
W7SYU7_9STRA	2.790e-27	59.00	Putative polyprotein n=1 Tax=Nannochloropsis gadit...	[more]
W7U3E4_9STRA	5.380e-27	57.00	Copia-type polyprotein (Fragment) n=1 Tax=Nannochl...	[more]
W7T174_9STRA	6.110e-26	59.00	Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita...	[more]
W7TJ26_9STRA	2.060e-25	59.00	Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita...	[more]
W7TF74_9STRA	5.140e-25	57.00	Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita...	[more]
W7T0D1_9STRA	5.280e-25	59.00	Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita...	[more]
W7TIM1_9STRA	5.370e-25	58.00	Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita...	[more]
W7T201_9STRA	8.110e-25	59.00	Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita...	[more]
A0A6G0SFH2_9STRA	6.640e-24	53.00	Uncharacterized protein n=4 Tax=Phytophthora fraga...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6002	contig	P-wetherbeei_contig6002:2218..2517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	67593.Physo133508
PFAMs	RVT_2,Retrotran_gag_2,rve
Model size	300
Max annot lvl	4776\|Peronosporales
Hectar predicted targeting category	other localisation
Exons	1
Evalue	2.34e-16
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QHHC@4776\|Peronosporales
Description	gag-polypeptide of LTR copia-type
Cds size	270
COG category	L

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186881.9788084-UTR-P-wetherbeei_contig6002:2217..2247	1683186881.9788084-UTR-P-wetherbeei_contig6002:2217..2247	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig6002 2218..2247 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186881.9910507-CDS-P-wetherbeei_contig6002:2247..2517	1683186881.9910507-CDS-P-wetherbeei_contig6002:2247..2517	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig6002 2248..2517 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6002.3.1	prot_P-wetherbeei_contig6002.3.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig6002 2248..2517 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig6002:2218..2517+
coding sequence from alignment at P-wetherbeei_contig6002:2218..2517+

protein sequence of mRNA_P-wetherbeei_contig6002.3.1

>prot_P-wetherbeei_contig6002.3.1 ID=prot_P-wetherbeei_contig6002.3.1|Name=mRNA_P-wetherbeei_contig6002.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MAACSATQEAIYLRCLLESLGHPQTNPTIIHEDNQAAIALAHTAIEQWHP
RTRHMHVRYKFVKERVRSHEVELVYVHTSNQLADLLTKNL

mRNA from alignment at P-wetherbeei_contig6002:2218..2517+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig6002.3.1 ID=mRNA_P-wetherbeei_contig6002.3.1|Name=mRNA_P-wetherbeei_contig6002.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig6002:2218..2517+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGCCCTTTCTAGCACGGAGGCGGAATACATGGCCGCCTGCTCCGCTAC
CCAAGAAGCCATCTATCTTAGATGCCTACTAGAAAGCCTGGGCCATCCCC
AAACCAATCCGACAATAATCCATGAGGACAACCAAGCGGCAATCGCCCTT
GCCCACACCGCCATTGAACAATGGCATCCCCGGACCCGCCACATGCACGT
ACGATACAAATTCGTCAAGGAACGCGTCCGCTCTCATGAAGTGGAACTCG
TTTACGTGCACACCAGCAACCAACTTGCTGACCTGCTCACCAAAAACCTT

Coding sequence (CDS) from alignment at P-wetherbeei_contig6002:2218..2517+

>mRNA_P-wetherbeei_contig6002.3.1 ID=mRNA_P-wetherbeei_contig6002.3.1|Name=mRNA_P-wetherbeei_contig6002.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig6002:2218..2517+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCTGCTCCGCTACCCAAGAAGCCATCTATCTTAGATGCCTACT
AGAAAGCCTGGGCCATCCCCAAACCAATCCGACAATAATCCATGAGGACA
ACCAAGCGGCAATCGCCCTTGCCCACACCGCCATTGAACAATGGCATCCC
CGGACCCGCCACATGCACGTACGATACAAATTCGTCAAGGAACGCGTCCG
CTCTCATGAAGTGGAACTCGTTTACGTGCACACCAGCAACCAACTTGCTG
ACCTGCTCACCAAAAACCTT