mRNA_P-wetherbeei_contig60.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig60.6.1
Unique NamemRNA_P-wetherbeei_contig60.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig60.6.1 vs. uniprot
Match: A0A835ZCA7_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.000e-11
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  103 VDVDEFLDAIGLPQYRQCLLLNLGFSDGTGNLSKQKLAQLQMQQLPQMNISQFDHEKRIMARMRQL 300
            +DV  FL   GL QYR+C + NL   DG G LS++KLAQ+QM  LP MNI++ DH+K IMAR+++L
Sbjct:    6 IDVRTFLKPTGLEQYRECFMTNLWGGDGRG-LSRRKLAQVQMHHLPDMNITRHDHQKIIMARLKEL 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig60.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZCA7_9STRA5.000e-1154.55SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig60contigP-wetherbeei_contig60:11204..11864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3E1
PFAMsGAF,PDEase_I
Model size555
Max annot lvl2759|Eukaryota
KEGG rclassRC00296
KEGG koko:K13293
KEGG ReactionR00191
KEGG Pathwayko00230,ko04024,ko05032,map00230,map04024,map05032
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.03e-05
EggNOG OGsKOG3689@1|root,KOG3689@2759|Eukaryota
Ec32 ortholog descriptionGAF domain
Ec32 orthologEc-09_001160.2
EC3.1.4.53
Description3',5'-cyclic-nucleotide phosphodiesterase activity
Cds size555
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.5207698-CDS-P-wetherbeei_contig60:11203..114851683186881.5207698-CDS-P-wetherbeei_contig60:11203..11485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig60 11204..11485 -
1683186881.5342798-CDS-P-wetherbeei_contig60:11591..118641683186881.5342798-CDS-P-wetherbeei_contig60:11591..11864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig60 11592..11864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig60.6.1prot_P-wetherbeei_contig60.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig60 11204..11864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig60.6.1

>prot_P-wetherbeei_contig60.6.1 ID=prot_P-wetherbeei_contig60.6.1|Name=mRNA_P-wetherbeei_contig60.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
NQPSHKVHRKANTAKRRNNSKSVARAPMVKNSGTVDVDEFLDAIGLPQYR
QCLLLNLGFSDGTGNLSKQKLAQLQMQQLPQMNISQFDHEKRIMARMRQL
LFPEGTSPPPQDPIDDAHNLNANGTAESSLSSESGLVHAERGSHDAITRK
NDGSSCGAAGAPPERHSSGGGGNGGHAKHSIGTGG
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mRNA from alignment at P-wetherbeei_contig60:11204..11864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig60.6.1 ID=mRNA_P-wetherbeei_contig60.6.1|Name=mRNA_P-wetherbeei_contig60.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=661bp|location=Sequence derived from alignment at P-wetherbeei_contig60:11204..11864- (Phaeothamnion wetherbeei SAG_119_79)
AATCAACCATCTCACAAGGTCCACCGTAAAGCTAACACAGCAAAACGACG
AAACAACAGCAAAAGTGTTGCTCGAGCGCCGATGGTAAAAAATAGTGGCA
CTGTTGATGTCGACGAATTCCTTGATGCCATTGGCCTGCCTCAGTACCGC
CAGTGCCTCCTTTTGAATCTCGGCTTCAGCGATGGCACTGGGAACCTCTC
AAAGCAAAAGCTAGCCCAGCTACAGATGCAACAATTGCCGCAGATGAACA
TTTCTCAATTCGATCACGAGAAGGTGAGCCATCGGCTGGCTTCCCAACTT
TGTTTCATGCTGCCTTGTATGCTCCAAACGTGGCGTCAGCTTCACACGGA
TAGCGCTCCTCATTTCTTTGCCGGTGCAGCGCATCATGGCTCGGATGCGA
CAGCTTCTCTTCCCTGAAGGCACCAGTCCGCCACCACAAGATCCCATCGA
CGATGCACATAATCTAAACGCCAACGGGACGGCAGAGTCGTCCTTGTCCT
CTGAGAGCGGACTAGTGCACGCTGAACGGGGATCGCACGACGCCATAACA
AGAAAGAACGATGGAAGCAGCTGTGGTGCAGCCGGCGCACCGCCAGAAAG
ACATTCCAGTGGCGGCGGCGGCAACGGCGGCCACGCCAAACATTCAATTG
GAACAGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig60:11204..11864-

>mRNA_P-wetherbeei_contig60.6.1 ID=mRNA_P-wetherbeei_contig60.6.1|Name=mRNA_P-wetherbeei_contig60.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig60:11204..11864- (Phaeothamnion wetherbeei SAG_119_79)
AATCAACCATCTCACAAGGTCCACCGTAAAGCTAACACAGCAAAACGACG
AAACAACAGCAAAAGTGTTGCTCGAGCGCCGATGGTAAAAAATAGTGGCA
CTGTTGATGTCGACGAATTCCTTGATGCCATTGGCCTGCCTCAGTACCGC
CAGTGCCTCCTTTTGAATCTCGGCTTCAGCGATGGCACTGGGAACCTCTC
AAAGCAAAAGCTAGCCCAGCTACAGATGCAACAATTGCCGCAGATGAACA
TTTCTCAATTCGATCACGAGAAGCGCATCATGGCTCGGATGCGACAGCTT
CTCTTCCCTGAAGGCACCAGTCCGCCACCACAAGATCCCATCGACGATGC
ACATAATCTAAACGCCAACGGGACGGCAGAGTCGTCCTTGTCCTCTGAGA
GCGGACTAGTGCACGCTGAACGGGGATCGCACGACGCCATAACAAGAAAG
AACGATGGAAGCAGCTGTGGTGCAGCCGGCGCACCGCCAGAAAGACATTC
CAGTGGCGGCGGCGGCAACGGCGGCCACGCCAAACATTCAATTGGAACAG
GCGGC
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