mRNA_P-wetherbeei_contig6.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6.9.1
Unique NamemRNA_P-wetherbeei_contig6.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A6H5J9H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.280e-27
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVA 318
            Q+PQ+LLIGTSEIL++VT++EFFY++AP   +  SA LNL TTALGSW+T+PLL   N G F            PWV  DLNDG+LE YF VLA L+A++L VFVA
Sbjct:  551 QVPQYLLIGTSEILSAVTSLEFFYAEAPTTVRGVSAGLNLLTTALGSWVTVPLLSLVNSGAFGS----------PWVTDDLNDGRLELYFCVLAGLVAISLLVFVA 646          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A7R9UG45_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG45_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.330e-27
Identity = 63/126 (50.00%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVAVASRYEYPRWQQRRLVLPHD 378
            Q+PQFLL+GTSEIL SVTAMEFFYSQ P   +S SAALNL TTALGSW TIPL+   N            N    WVP DLN G LE +F+V+  +M + LA F+  A  Y+Y +  + + +   D
Sbjct:  216 QVPQFLLVGTSEILASVTAMEFFYSQTPSNMRSISAALNLLTTALGSWATIPLVLVVNA-----------NKSDAWVPDDLNKGHLEQFFVVIVAIMVVNLAAFMWFAKGYKYVKATELKALAEED 330          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A7R9UH25_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.970e-26
Identity = 63/126 (50.00%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVAVASRYEYPRWQQRRLVLPHD 378
            Q+PQFLL+GTSEIL SVTAMEFFYSQ P   +S SAALNL TTALGSW TIPL+   N            N    WVP DLN G LE +F+V+  +M + LA F+  A  Y+Y +  + + +   D
Sbjct:  431 QVPQFLLVGTSEILASVTAMEFFYSQTPSNMRSISAALNLLTTALGSWATIPLVLVVNA-----------NKSDAWVPDDLNKGHLEQFFVVIVAIMVVNLAAFMWFAKGYKYVKATELKALAEED 545          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A812SUJ8_SYMMI (NPF8.1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SUJ8_SYMMI)

HSP 1 Score: 105 bits (262), Expect = 5.340e-26
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    4 IPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVAVASRYEY 339
            IPQF LIG +EI  ++T++EFFYSQAP   +S S ALNL TTALGSW+TIPLL   N G+F             WVP +L+DG L  YF +LA LM +   V+  +++ YEY
Sbjct:    1 IPQFCLIGVAEIFAAITSLEFFYSQAPTSMRSVSQALNLFTTALGSWLTIPLLILDNSGLFG----------EEWVPENLDDGHLSRYFFLLAGLMVVNQCVYHYISADYEY 102          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: D7G1M8_ECTSI (Amino acid/peptide transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.340e-24
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAV 309
            Q+PQ+LLIGTSEIL++VT++EFFY++AP   +  SA LNL TTALGSW+T+PLL   N G F            PWV  DLNDG LE YF +LA L+A++ A+
Sbjct:  383 QVPQYLLIGTSEILSAVTSLEFFYAEAPTTVRGVSAGLNLLTTALGSWVTVPLLSLVNSGAFGS----------PWVTDDLNDGHLELYFCLLAGLVAISQAL 475          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A835YK04_9STRA (POT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK04_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.450e-24
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLA 282
            QIPQF+LIGTSEIL SV+AMEFFYS+AP   KSTS+ALNL TTALGSW+TIPL+   N G          +  R WVP DLN G LE +F +LA
Sbjct:  434 QIPQFILIGTSEILASVSAMEFFYSEAPASMKSTSSALNLLTTALGSWVTIPLIALVNMG----------SEERQWVPEDLNHGHLELFFFLLA 517          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A7S3XL66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL66_HETAK)

HSP 1 Score: 107 bits (266), Expect = 3.310e-24
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   10 QFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVAVASRYEYP 342
            QFLLIGT+EILTS+TAMEFFY  AP   KST ++LNL TTALGSW+TIPL+  AN+           ++ +PW+  DLN G LE YF +LA LM L  +++ AV   +  P
Sbjct:  236 QFLLIGTAEILTSITAMEFFYEHAPDSMKSTVSSLNLLTTALGSWLTIPLIAFANNV----------DSRKPWISEDLNSGSLEKYFFLLAGLMLLDFSIYAAVCRWWRRP 336          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A4D9CZP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZP4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.820e-23
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVAVASRYE 336
            QIPQF+L+G SEILTS+T+  FFY+QAPP  +S SA+LNL TTALG+W+ IPL+  AN G               WVPSD+N G L  +F +LA +MA  +  F   A +Y+
Sbjct:  169 QIPQFVLVGISEILTSITSYAFFYAQAPPNMRSFSASLNLLTTALGTWLCIPLVALANSGKVQ------------WVPSDVNKGNLAAFFFMLAGIMACMIVAFFFHARKYK 268          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: W7TJG8_9STRA (Peptide transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.200e-22
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWITIPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVAVASRYE 336
            QIPQF+L+G SEILTS+T+  FFY+QAPP  +S SA+LNL TTALG+W+ IPL+  AN G               WVPSD+N G L  +F +LA +MA  +  F   A +Y+
Sbjct:  577 QIPQFILVGISEILTSITSYAFFYAQAPPNMRSFSASLNLLTTALGTWLCIPLVALANSGKVQ------------WVPSDVNKGNLAAFFFMLAGMMACMIVAFFFHARKYK 676          
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Match: A0A836BTX8_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BTX8_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 5.590e-22
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWIT--IPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALALAVFVAVASRYEYPRWQQRRLVLP 372
            Q PQ+L++G SE+L S+  +EFFY QAP   +S S AL L++TA+GS+++  I LL        AGR+         W+P DLN G+L+ +FL +ALLMAL+ A FVAVA  Y Y   + +R+V P
Sbjct:  507 QAPQYLIVGASEVLASIGQLEFFYDQAPDVMRSCSMALQLASTAIGSYMSGVIVLLVQVASPAVAGRQ---------WLPRDLNTGRLDLFFLFMALLMALSTAAFVAVAMNYTYKAVEHKRVVAP 623          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9H6_9PHAE1.280e-2757.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UG45_9STRA4.330e-2750.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9UH25_9STRA2.970e-2650.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812SUJ8_SYMMI5.340e-2650.00NPF8.1 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
D7G1M8_ECTSI1.340e-2454.37Amino acid/peptide transporter n=1 Tax=Ectocarpus ... [more]
A0A835YK04_9STRA2.450e-2461.70POT family-domain-containing protein n=1 Tax=Tribo... [more]
A0A7S3XL66_HETAK3.310e-2452.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CZP4_9STRA1.820e-2349.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TJG8_9STRA2.200e-2249.11Peptide transporter ptr1 n=1 Tax=Nannochloropsis g... [more]
A0A836BTX8_9CHLO5.590e-2245.24Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6contigP-wetherbeei_contig6:16322..18053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1M8
PFAMsPTR2
Model size519
Max annot lvl2759|Eukaryota
KEGG koko:K14638,ko:K14639
KEGG TC2.A.17.3
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.2e-25
EggNOG OGsCOG3104@1|root,KOG1237@2759|Eukaryota
Descriptiontransmembrane transporter activity
Cds size519
COG categoryE
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.0604444-CDS-P-wetherbeei_contig6:16321..165001683186881.0604444-CDS-P-wetherbeei_contig6:16321..16500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 16322..16500 -
1683186881.0792-CDS-P-wetherbeei_contig6:17350..176301683186881.0792-CDS-P-wetherbeei_contig6:17350..17630Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 17351..17630 -
1683186881.091128-CDS-P-wetherbeei_contig6:17993..180531683186881.091128-CDS-P-wetherbeei_contig6:17993..18053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 17994..18053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6.9.1prot_P-wetherbeei_contig6.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6 16322..18053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6.9.1

>prot_P-wetherbeei_contig6.9.1 ID=prot_P-wetherbeei_contig6.9.1|Name=mRNA_P-wetherbeei_contig6.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
QIPQFLLIGTSEILTSVTAMEFFYSQAPPEAKSTSAALNLSTTALGSWIT
IPLLFAANHGVFAGRRGGRDNAWRPWVPSDLNDGKLECYFLVLALLMALA
LAVFVAVASRYEYPRWQQRRLVLPHDAAATAATAVTAYAARNVADDAIPF
ADVAPGTPAPPPPPPPLLPPPPP
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mRNA from alignment at P-wetherbeei_contig6:16322..18053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6.9.1 ID=mRNA_P-wetherbeei_contig6.9.1|Name=mRNA_P-wetherbeei_contig6.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1732bp|location=Sequence derived from alignment at P-wetherbeei_contig6:16322..18053- (Phaeothamnion wetherbeei SAG_119_79)
CAGATTCCTCAGTTCCTCCTGATTGGTACGAGCGAGATCCTCACATCCGT TACTGCCATGGTGCGTCCACTGCCGTGGTTTGGGGTGAGGGGTTTCCCTT TCGTCTTCAGTCTTCTGGCACACGCTCGGCTGATTTGCACCGGTGGCACG TCGTTTGAGGCGGTGAGCCGTTGCGTTGCATCGGCGCCCTCTTTTTACGC TAGGCGACCGAGGGGTAGCGAGCGGAGCTGACATCTCTCAGGCATTACTT GACATTACGCCGCCGGTGATGCCCATAATCCCCTCCTGGTGCCTTCTACG GTACATTTACATGTGTCTATCGCGCTGCCTTGTGATTGGTGCCTTGCTGT GTCGCTCTCCTGTGTGAGTCACCCACTGACGGGTGGACGGATTTGTCCTT TGCTTCCCTTTTGTCCGTCGCAGGAATTCTTTTACAGCCAGGCGCCGCCG GAGGCCAAGAGCACCAGCGCCGCGCTGAACCTCAGCACGACGGCGCTCGG CAGCTGGATCACCATCCCGCTGCTCTTCGCCGCGAACCATGGCGTGTTTG CTGGCCGCCGTGGCGGCAGAGACAACGCATGGCGGCCGTGGGTGCCGTCA GACCTCAACGACGGGAAACTTGAGTGCTATTTCCTGGTGCTGGCGTTGCT GATGGCGCTAGCGCTGGCGGTCTTCGTCGCGGTTGCATCAAGGTATGAGT ACCGTGACGACACGCGACCGAGCGGCGGCGCCGTCGTTGTCGCTGCCGTA AAAGACGCGGCGGCGACGGGCAACACCGCGGGCACGGACGGTGTATGACA ATCGTGGTTGCCGCTGAAGTTGCGGCGACGGGTGTGACGGCGGCGGCTTT GCCAGCGAGAGGCTGCGGTGGTAGCGGCGACGGCAGCATTGCACTGGTTA TTGGCAGGGTGTTGAAATGGAATTGGTTCGCCCTTTTAAGGCTGTACCTT TGGGCCTCGTTAGCAGAAGGAGGCCCCCTTTGGACCCTCGAGGGTGACAA ACAGAAATAGGTGGGCTTTGCGCACGTCCCGCCAGAAACCGTTTCAAAAG GAACAGAGCTATTCTACTGGGGAAGAGGGGGCCTTATCTAAGCCTCTGCG ACTGGAGGATCAAGTTAAAGGGTACTGTAGCGGTTTAAGTTAAAGGGTAC AGTGGCGGCTTACCAGTGGTGGGACATGTTGGGTCGGAGTAGGGAATGAG GGAGCGCACAACGAGGTAGGTGTGAGATTGCTGGAAAGGGAAAGGATACC GGTCGATTTGCAATACGCTTTGACTATACATACTCATTTATTTTTGTTAT GCACTTGGTTTTTAGTGAAGACTTGCCAGCAAGGTTCAGCCGAAAGCAAG CAGCGAAGGAAGAATCATAAAGCGTTCAAACGCTTTTGCAATCATGTGAC CATGGATCTTTCCCTTCCGCTGCCGACCGTAAAAAGATCGATCTTCCCCA ACCCTTGCTTGCCTGTATCTTTCGCTTTAAGTGCGATACCATTGAATACT CTGCCGTCGCCTTCCATGTACAGTCGTCTATGATATTAGCCAGTGCGCCG AAGCACGATGGCAGCAGCGCCGTCTTGTCCTCCCACACGATGCCGCTGCG ACCGCCGCCACTGCTGTCACCGCCTATGCCGCCAGGAACGTCGCGGATGA CGCCATCCCCTTCGCTGATGTCGCCCCAGGCACCCCAGCGCCCCCGCCGC CGCCGCCGCCGCTGCTACCACCGCCGCCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6:16322..18053-

>mRNA_P-wetherbeei_contig6.9.1 ID=mRNA_P-wetherbeei_contig6.9.1|Name=mRNA_P-wetherbeei_contig6.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig6:16322..18053- (Phaeothamnion wetherbeei SAG_119_79)
CAGATTCCTCAGTTCCTCCTGATTGGTACGAGCGAGATCCTCACATCCGT
TACTGCCATGGAATTCTTTTACAGCCAGGCGCCGCCGGAGGCCAAGAGCA
CCAGCGCCGCGCTGAACCTCAGCACGACGGCGCTCGGCAGCTGGATCACC
ATCCCGCTGCTCTTCGCCGCGAACCATGGCGTGTTTGCTGGCCGCCGTGG
CGGCAGAGACAACGCATGGCGGCCGTGGGTGCCGTCAGACCTCAACGACG
GGAAACTTGAGTGCTATTTCCTGGTGCTGGCGTTGCTGATGGCGCTAGCG
CTGGCGGTCTTCGTCGCGGTTGCATCAAGGTATGAGTACCCACGATGGCA
GCAGCGCCGTCTTGTCCTCCCACACGATGCCGCTGCGACCGCCGCCACTG
CTGTCACCGCCTATGCCGCCAGGAACGTCGCGGATGACGCCATCCCCTTC
GCTGATGTCGCCCCAGGCACCCCAGCGCCCCCGCCGCCGCCGCCGCCGCT
GCTACCACCGCCGCCCCCC
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