mRNA_P-wetherbeei_contig6.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6.6.1
Unique NamemRNA_P-wetherbeei_contig6.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6contigP-wetherbeei_contig6:8949..9957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1009
Hectar predicted targeting categoryother localisation
Exons1
Cds size789
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.7879472-UTR-P-wetherbeei_contig6:8948..91561683186880.7879472-UTR-P-wetherbeei_contig6:8948..9156Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6 8949..9156 +
1683186880.8208323-UTR-P-wetherbeei_contig6:9945..99571683186880.8208323-UTR-P-wetherbeei_contig6:9945..9957Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6 9946..9957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.8087335-CDS-P-wetherbeei_contig6:9156..99451683186880.8087335-CDS-P-wetherbeei_contig6:9156..9945Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 9157..9945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6.6.1prot_P-wetherbeei_contig6.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6 9157..9945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6.6.1

>prot_P-wetherbeei_contig6.6.1 ID=prot_P-wetherbeei_contig6.6.1|Name=mRNA_P-wetherbeei_contig6.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
MAEQRLIQVPSSPESSLYVSAIEIQTELQDDSGLVHAKLDGLDDSMLVDG
WVTPAEATEVKTGTSVMRATSVAAAAGAAALDRLLELPCDCDGADAWLER
LVTQATLLEDARREIVGLTKALQSERRAAQATTQKLAAQVAALSRDIVTL
KAAKRDDSGDRENWMGAITGEPACMLASSDDDDAATPPSRGGWRWRNDAP
SAGDLVEPSVPHGVGCDSGGAPVITPLREWSGRRANASGTETRHKLAVRC
AVNAAPGGLDRS*
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mRNA from alignment at P-wetherbeei_contig6:8949..9957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6.6.1 ID=mRNA_P-wetherbeei_contig6.6.1|Name=mRNA_P-wetherbeei_contig6.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1009bp|location=Sequence derived from alignment at P-wetherbeei_contig6:8949..9957+ (Phaeothamnion wetherbeei SAG_119_79)
CGGAAAGGTCTGGTCGGCTGATGTACGGGAAACCACACGAAACACGCTTA
GAGCAACAGAGAGCAGCATAAGCGTCCGCGGCGTACCTGTTCCAAACTGT
GGGCGCCGTACTCGATTCCACTTTTTTTAAACACGCCATTTGAAATCGGA
GGACTTTGAGAGCCCTCGGCACCTTCAATTCTTCTTATAACAAAAATAAA
CCCCGAAAATGGCGGAGCAGCGACTAATCCAGGTACCGTCTTCGCCCGAA
AGCTCTCTCTATGTGAGCGCAATCGAGATCCAAACTGAGTTACAAGACGA
TTCCGGCCTCGTCCATGCAAAGTTAGATGGCTTGGACGATTCCATGCTCG
TCGACGGCTGGGTAACGCCGGCGGAGGCCACAGAGGTGAAAACTGGAACC
TCTGTCATGAGAGCAACATCGGTGGCTGCTGCCGCCGGAGCCGCTGCTCT
CGACAGACTGTTGGAGCTGCCCTGCGATTGTGACGGCGCCGACGCCTGGC
TGGAGCGGCTCGTGACACAGGCCACTCTACTGGAGGATGCACGTCGTGAA
ATCGTCGGCCTGACAAAGGCGCTCCAGTCGGAAAGACGGGCAGCGCAGGC
GACCACGCAAAAGCTGGCGGCGCAAGTCGCCGCGCTCTCTCGAGATATCG
TTACTCTAAAGGCGGCAAAACGCGATGACAGCGGCGACCGTGAAAACTGG
ATGGGTGCTATTACCGGGGAGCCAGCATGCATGCTGGCGAGCAGCGACGA
CGACGATGCCGCTACGCCACCGTCACGCGGCGGCTGGCGCTGGCGAAACG
ATGCTCCTTCTGCCGGCGACCTCGTTGAGCCGTCCGTACCGCATGGTGTT
GGCTGTGACAGCGGCGGTGCTCCTGTCATCACTCCGCTCAGAGAGTGGTC
TGGACGGCGCGCGAACGCTAGCGGCACAGAAACGAGACACAAGCTTGCGG
TTCGCTGCGCTGTGAACGCGGCACCTGGCGGACTGGACCGGTCGTGAGAA
CGGCGGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6:8949..9957+

>mRNA_P-wetherbeei_contig6.6.1 ID=mRNA_P-wetherbeei_contig6.6.1|Name=mRNA_P-wetherbeei_contig6.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig6:8949..9957+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAGCAGCGACTAATCCAGGTACCGTCTTCGCCCGAAAGCTCTCT
CTATGTGAGCGCAATCGAGATCCAAACTGAGTTACAAGACGATTCCGGCC
TCGTCCATGCAAAGTTAGATGGCTTGGACGATTCCATGCTCGTCGACGGC
TGGGTAACGCCGGCGGAGGCCACAGAGGTGAAAACTGGAACCTCTGTCAT
GAGAGCAACATCGGTGGCTGCTGCCGCCGGAGCCGCTGCTCTCGACAGAC
TGTTGGAGCTGCCCTGCGATTGTGACGGCGCCGACGCCTGGCTGGAGCGG
CTCGTGACACAGGCCACTCTACTGGAGGATGCACGTCGTGAAATCGTCGG
CCTGACAAAGGCGCTCCAGTCGGAAAGACGGGCAGCGCAGGCGACCACGC
AAAAGCTGGCGGCGCAAGTCGCCGCGCTCTCTCGAGATATCGTTACTCTA
AAGGCGGCAAAACGCGATGACAGCGGCGACCGTGAAAACTGGATGGGTGC
TATTACCGGGGAGCCAGCATGCATGCTGGCGAGCAGCGACGACGACGATG
CCGCTACGCCACCGTCACGCGGCGGCTGGCGCTGGCGAAACGATGCTCCT
TCTGCCGGCGACCTCGTTGAGCCGTCCGTACCGCATGGTGTTGGCTGTGA
CAGCGGCGGTGCTCCTGTCATCACTCCGCTCAGAGAGTGGTCTGGACGGC
GCGCGAACGCTAGCGGCACAGAAACGAGACACAAGCTTGCGGTTCGCTGC
GCTGTGAACGCGGCACCTGGCGGACTGGACCGGTCGTGA
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