mRNA_P-wetherbeei_contig6.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6.3.1
Unique NamemRNA_P-wetherbeei_contig6.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A6H5KAM6_9PHAE (FAM192A_Fyv6_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.320e-28
Identity = 67/122 (54.92%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 MTSIGFVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMARARQVRVVAGP 366
            M  IGFVST++LES DGIDFN+E R ESE+   A   A++A  KPLWEQL  ++ EKQA +DAV   MFAPP+ALDD+E+ +L+GVE QR E   R + WE  EL  F++ARA Q   +A P
Sbjct:    1 MAHIGFVSTSVLESKDGIDFNEEVRKESEDVLEAERIAKEADKKPLWEQLAGKRDEKQAKFDAVRASMFAPPRALDDEESNFLQGVEAQRLEAKERKKKWETEELRGFALARANQTVAIAEP 122          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.850e-27
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 MTSIGFVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMARARQVRVVAGP 366
            M  IGFVST++LES DGIDFN+E R ESE+ R A   A++A  KPLWEQL  ++ EKQA +DAV   MFAPP+ALDD+E+ +L+GVE QR E   R + WE  EL  F++ARA Q   +A P
Sbjct:    1 MAHIGFVSTSVLESKDGIDFNEEVRKESEDVREAERIAKEADKKPLWEQLAGKRDEKQAKFDAVRASMFAPPRALDDEESNFLQGVEAQRLEAKERKKKWETEELRGFALARANQTVAIAEP 122          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A835Z9S0_9STRA (FAM192A_Fyv6_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.140e-26
Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 MTSIGFVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVE--RQRAEKTARARDWEARELEAFSMARARQV 348
            MTSIGFVST++LES DGIDF  EKR+E+EE + A +RA +AA +PLWEQLQER+  K   YD V K +FAPPK LD+++  +L+ VE  R+ A+KT + R  E  E+EAF+ ARA Q+
Sbjct:    1 MTSIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHR--EVLEIEAFASARANQI 116          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: W7U024_9STRA (FAM192A_Fyv6_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U024_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.820e-20
Identity = 54/113 (47.79%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 MTSIGFVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMARA 339
            M +I FV+T++L S DG+ +  E+  + E  ++  E+ + A S+ LWEQL+E++ +K+A+YDAVTKQ+FAPPKALD++EA YL+G+  Q   +  R  + E REL AFS+ARA
Sbjct:    1 MAAIRFVATSVLSSDDGVSYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLARA 113          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A7R9UCY6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCY6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.860e-17
Identity = 49/111 (44.14%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 MTSIGFVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMA 333
            + ++ F+ST++L+S DGI FN+E++IESEE  RA + A    SKPL+EQL E++A+KQ +YDA+T+Q++A PKALD+++ E+L+ +  ++ +K ++ R      L AF+ A
Sbjct:    5 LRNMNFISTSVLKSEDGISFNKEEQIESEEAARA-KAANSLPSKPLYEQLAEQEAKKQEEYDAITRQLYAAPKALDEEDVEHLDAIAERQRKKESQKRAEXXAALSAFAAA 114          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A7S2W1Z4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1Z4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.670e-15
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    7 SIGFVSTTMLE-SSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMAR 336
            S GFV T +LE  SDG+    E R+E++E +R   RA Q A+KPL+EQL+E + +KQ  YDAVTK +FAPPKALDD++ EYL     +  ++    +  E ++L+AF  AR
Sbjct:   24 SSGFVKTAVLEPGSDGLSHGGETRLETDEVKRQEARAAQQAAKPLFEQLEEEKQKKQDAYDAVTKMIFAPPKALDDEDIEYLNDAAERDKQRKDLIKAQEDQDLDAFKNAR 134          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A7S3GT51_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT51_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.930e-11
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   16 FVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEAR----ELEAFSMAR 336
            FV T++L SSDGIDF  E  +ES+E R+    A  A +KPL+EQL + +  K+ +YD  TK++FAPPK LD+++ ++   ++    +  ARA D   R    ELEAF  +R
Sbjct:    5 FVKTSILSSSDGIDFGTEIAVESDEVRKTRVAAEAAGNKPLYEQLADIRDRKKLEYDENTKKIFAPPKGLDEEDIDFFNEMD----DAKARAEDQNKRLVDAELEAFRESR 111          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A7S2C286_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C286_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.180e-10
Identity = 43/112 (38.39%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    7 SIGFVSTTMLESSD-GIDFN-QEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMAR 336
            S GFV T++L  S+ G  ++ +E +IESE+ RR   R  + +SKPL+EQL+  + ++Q +YD VTK +FAPP+ALD+++  +   V+ +  ++  +  + E  E+ AF+ AR
Sbjct:    2 SSGFVKTSILAPSETGAAYDVEETKIESEDVRRQTRREAELSSKPLFEQLESNKEKEQEEYDRVTKLIFAPPQALDEEDVHHFNSVKEREQQRRMKISEHEESEIAAFTSAR 113          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A7S4M9X9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M9X9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.760e-7
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    7 SIGFVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMARA 339
            S+ FVS+ +L S+DG+  N+EK IES ET+     A   +++PL+EQL+  +  ++   D   K +    + LDD++  +L+ VER R E+ AR RD    E+ AF  ARA
Sbjct:    2 SLSFVSSAVLSSTDGVSHNEEKPIESSETKSLRFGAVGGSARPLFEQLRSNRQAEEEKRDEAAKALRGT-RTLDDEDCAHLDAVERVRMEREARVRDEVEDEVAAFRAARA 111          
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Match: A0A8K1FA38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA38_PYTOL)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-5
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   13 GFVSTTMLESSDGI--DFNQEKRIESEETRRAAERARQAAS-KPLWEQLQERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDWEARELEAFSMAR 336
            GFVSTT+L S+DG+  D  +EKRI        A  AR AA  KPL+E+LQ+ + +K  ++       +APPKALDD+E E++  +E ++A+   + ++ +  ++  F +AR
Sbjct:   16 GFVSTTVLTSADGLFGDNVEEKRI----LEAPAPSARDAADYKPLYERLQDMKDQKDREWKEKNNP-YAPPKALDDEEIEFIRDLESRKADSETQRQEQQREDIAEFMLAR 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KAM6_9PHAE2.320e-2854.92FAM192A_Fyv6_N domain-containing protein n=1 Tax=E... [more]
D8LM72_ECTSI2.850e-2755.74R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z9S0_9STRA6.140e-2655.93FAM192A_Fyv6_N domain-containing protein n=1 Tax=T... [more]
W7U024_9STRA1.820e-2047.79FAM192A_Fyv6_N domain-containing protein n=2 Tax=M... [more]
A0A7R9UCY6_9STRA5.860e-1744.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2W1Z4_9STRA4.670e-1546.85Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3GT51_9STRA3.930e-1142.34Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2C286_9STRA2.180e-1038.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4M9X9_9STRA2.760e-738.74Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8K1FA38_PYTOL1.510e-537.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6contigP-wetherbeei_contig6:6176..7216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.10365
PFAMsNefa_Nip30_N
Model size908
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.14e-07
EggNOG OGs2CSAW@1|root,2S494@2759|Eukaryota,3QFCE@4776|Peronosporales
Ec32 ortholog descriptionNEFA-interacting nuclear protein NIP30, N-terminal
Ec32 orthologEc-18_002730.4
DescriptionN-terminal domain of NEFA-interacting nuclear protein NIP30
Cds size846
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.9381852-UTR-P-wetherbeei_contig6:6175..62371683186880.9381852-UTR-P-wetherbeei_contig6:6175..6237Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6 6176..6237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.9496553-CDS-P-wetherbeei_contig6:6237..68751683186880.9496553-CDS-P-wetherbeei_contig6:6237..6875Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 6238..6875 -
1683186880.95898-CDS-P-wetherbeei_contig6:7008..72161683186880.95898-CDS-P-wetherbeei_contig6:7008..7216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 7009..7216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6.3.1prot_P-wetherbeei_contig6.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6 6238..7216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6.3.1

>prot_P-wetherbeei_contig6.3.1 ID=prot_P-wetherbeei_contig6.3.1|Name=mRNA_P-wetherbeei_contig6.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
MTSIGFVSTTMLESSDGIDFNQEKRIESEETRRAAERARQAASKPLWEQL
QERQAEKQADYDAVTKQMFAPPKALDDDEAEYLEGVERQRAEKTARARDW
EARELEAFSMARARQVRVVAGPTAEAGLGGATSSSIGSDAAGNGGGGLAL
AAPSRPLPPPKPVVQLKLRRRKSESVTTASPVMAGAVSASSADGDRPKKR
KKKTEKAEEDAAASESVGIRRLGGEGAAVKPTAVAAATAVTGSSRDGDRG
EKGGGDGGGGSGAGLGGLLGGYGSDSENEDA*
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mRNA from alignment at P-wetherbeei_contig6:6176..7216-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6.3.1 ID=mRNA_P-wetherbeei_contig6.3.1|Name=mRNA_P-wetherbeei_contig6.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig6:6176..7216- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCCATAGGATTTGTGAGCACCACTATGCTGGAGTCCTCGGACGG CATCGATTTCAACCAAGAAAAGCGAATCGAAAGCGAGGAAACGCGTCGCG CCGCCGAGCGGGCGCGCCAGGCGGCGTCAAAGCCTCTCTGGGAGCAGCTG CAGGAGCGGCAAGCCGAGAAACAGGCGGATTACGATGCGGTCACGAAGCA GATGTTTGGTACGTGTCTAGGAAAAGTTCAATTTCCGCGGGGAAATCTCT CCCTTCCATCTCGAAACGTTCGAGCGCTCACACGGCTTCGCGCGTCCCTC CTTTTCCCATATCGTTTCTCCGTTTTACACAACGAATGCAGCACCGCCAA AGGCGCTGGATGACGATGAGGCGGAATATCTGGAGGGAGTGGAGCGGCAG CGAGCTGAAAAGACGGCACGGGCGAGGGACTGGGAGGCGAGGGAGCTCGA GGCGTTTTCCATGGCTCGCGCCAGGCAGGTTCGCGTGGTGGCCGGCCCCA CCGCTGAGGCTGGGCTTGGAGGCGCCACCAGCAGCAGTATTGGCAGCGAC GCGGCCGGCAACGGTGGAGGCGGGCTGGCTCTTGCAGCGCCGTCCCGGCC GCTGCCACCGCCAAAGCCGGTGGTCCAACTGAAGCTTCGTCGGCGCAAGT CCGAGAGCGTAACGACGGCATCGCCGGTGATGGCGGGCGCGGTGTCAGCA TCTTCGGCCGATGGCGACCGGCCGAAGAAGCGCAAGAAGAAGACGGAGAA GGCGGAAGAGGACGCCGCTGCATCAGAGTCCGTCGGCATCAGAAGACTTG GGGGGGAAGGAGCTGCGGTCAAGCCGACCGCCGTCGCTGCTGCCACAGCA GTCACGGGCAGCAGTCGAGACGGTGACAGGGGTGAGAAGGGTGGCGGCGA CGGCGGTGGCGGGAGCGGCGCTGGCTTGGGGGGTTTGCTTGGAGGCTACG GAAGTGACAGCGAGAACGAGGACGCATGACCGCTGCTTGACGCGCCCGCC GGCGTGGAGGTTCGTTGTATACAGGAGATTCGTTACTAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6:6176..7216-

>mRNA_P-wetherbeei_contig6.3.1 ID=mRNA_P-wetherbeei_contig6.3.1|Name=mRNA_P-wetherbeei_contig6.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig6:6176..7216- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCCATAGGATTTGTGAGCACCACTATGCTGGAGTCCTCGGACGG
CATCGATTTCAACCAAGAAAAGCGAATCGAAAGCGAGGAAACGCGTCGCG
CCGCCGAGCGGGCGCGCCAGGCGGCGTCAAAGCCTCTCTGGGAGCAGCTG
CAGGAGCGGCAAGCCGAGAAACAGGCGGATTACGATGCGGTCACGAAGCA
GATGTTTGCACCGCCAAAGGCGCTGGATGACGATGAGGCGGAATATCTGG
AGGGAGTGGAGCGGCAGCGAGCTGAAAAGACGGCACGGGCGAGGGACTGG
GAGGCGAGGGAGCTCGAGGCGTTTTCCATGGCTCGCGCCAGGCAGGTTCG
CGTGGTGGCCGGCCCCACCGCTGAGGCTGGGCTTGGAGGCGCCACCAGCA
GCAGTATTGGCAGCGACGCGGCCGGCAACGGTGGAGGCGGGCTGGCTCTT
GCAGCGCCGTCCCGGCCGCTGCCACCGCCAAAGCCGGTGGTCCAACTGAA
GCTTCGTCGGCGCAAGTCCGAGAGCGTAACGACGGCATCGCCGGTGATGG
CGGGCGCGGTGTCAGCATCTTCGGCCGATGGCGACCGGCCGAAGAAGCGC
AAGAAGAAGACGGAGAAGGCGGAAGAGGACGCCGCTGCATCAGAGTCCGT
CGGCATCAGAAGACTTGGGGGGGAAGGAGCTGCGGTCAAGCCGACCGCCG
TCGCTGCTGCCACAGCAGTCACGGGCAGCAGTCGAGACGGTGACAGGGGT
GAGAAGGGTGGCGGCGACGGCGGTGGCGGGAGCGGCGCTGGCTTGGGGGG
TTTGCTTGGAGGCTACGGAAGTGACAGCGAGAACGAGGACGCATGA
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