mRNA_P-wetherbeei_contig599.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig599.2.2
Unique NamemRNA_P-wetherbeei_contig599.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig599.2.2 vs. uniprot
Match: A0A836C9V7_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.610e-23
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 3 
Query:  138 LLNTSDQVAYALIMFIVAGLTLGEGLVLRHALMMAGRVVERVWREPRFATGLGYHLFGSAAALLTEEPKWLRGNEWDVLSLARLIYVKLVMGGTATDAQASNGRRTPVSDIPRRILLEVVGLPPAAINELEAKLK 542
            LL  SDQ AY ++M +V  L   +G   R A+  A ++ E VWR P+++  +G  + G+A   L  EPKW+ G EWD+L L R+IY+KLV+GG A+D +++ G  TP+S+ PR++LL + G+  A +  LE  L+
Sbjct:  971 LLVASDQTAYPMVMLVVGALCWPDGPACRGAIKCAHKITEAVWRMPKYSQVIGKSMMGAAVYALVTEPKWMVGLEWDMLQLTRVIYIKLVIGGDASDLESNGGVPTPISEEPRKLLLTLPGVSDADVQSLEDVLR 1105
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BLAST of mRNA_P-wetherbeei_contig599.2.2 vs. uniprot
Match: A0A7S3K3J3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3J3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.100e-7
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 3 
Query:   96 RESRRIRVRALEGLLLNTSDQVAYALIMFIVAGLTL-GEGLVLRHALMMAGRVVERVWREPRFATGLGYHLFGSAAALLTEEPKWLR--GNEWDVLSLARLIYVKLVMGGTATDAQASNGRRT---PVSDIPRRILLEVVGLPPAAINELEAKLKQSGAVRDQKDAMRDAL 590
            RE R   V AL   +L   +Q+A  ++  +   L + G+    R A  +A   +      P++   L   LF +A   L EEP WL   G E+++LSLAR +YV LV+   A D  A   R     P    PR +LL + G+ P  +  LE  L+Q  +V+DQ+ A++D +
Sbjct: 1066 RERRAAHVTALREFVLGNVEQLALPILRTLRLALAVWGDVPSCRAATRIAQVFIGAAHDRPQYYEPLAT-LFAAAVGALVEEPSWLANAGCEYELLSLARAVYVGLVL---AVDPNAIPRRVQIVPPRHTGPRDLLLSLPGVQPHHVQTLEQTLRQPSSVKDQRSAIQDVI 1232
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig599.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C9V7_9STRA1.610e-2341.48Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S3K3J3_9STRA1.100e-732.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig599contigP-wetherbeei_contig599:5665..8433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr45776
Model size1529
Max annot lvl2836|Bacillariophyta
KEGG koko:K14289
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.12e-11
EggNOG OGs2E7FC@1|root,2SE1I@2759|Eukaryota,2XDUC@2836|Bacillariophyta
Cds size657
BRITEko00000,ko00001,ko03016,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig599.2.2prot_P-wetherbeei_contig599.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig599 6361..7966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.0882573-UTR-P-wetherbeei_contig599:5664..63601683186880.0882573-UTR-P-wetherbeei_contig599:5664..6360Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig599 5665..6360 -
1683186880.1403115-UTR-P-wetherbeei_contig599:7966..79841683186880.1403115-UTR-P-wetherbeei_contig599:7966..7984Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig599 7967..7984 -
1683186880.1492875-UTR-P-wetherbeei_contig599:8275..84331683186880.1492875-UTR-P-wetherbeei_contig599:8275..8433Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig599 8276..8433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.099311-CDS-P-wetherbeei_contig599:6360..64421683186880.099311-CDS-P-wetherbeei_contig599:6360..6442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig599 6361..6442 -
1683186880.1085472-CDS-P-wetherbeei_contig599:6705..69371683186880.1085472-CDS-P-wetherbeei_contig599:6705..6937Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig599 6706..6937 -
1683186880.1198103-CDS-P-wetherbeei_contig599:7225..73641683186880.1198103-CDS-P-wetherbeei_contig599:7225..7364Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig599 7226..7364 -
1683186880.13145-CDS-P-wetherbeei_contig599:7762..79661683186880.13145-CDS-P-wetherbeei_contig599:7762..7966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig599 7763..7966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig599.2.2

>prot_P-wetherbeei_contig599.2.2 ID=prot_P-wetherbeei_contig599.2.2|Name=mRNA_P-wetherbeei_contig599.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=219bp
MFIVAGLTLGEGLVLRHALMMAGRVVERVWREPRFATGLGYHLFGSAAAL
LTEEPKWLRGNEWDVLSLARLIYVKLVMGGTATDAQASNGRRTPVSDIPR
RILLEVVGLPPAAINELEAKLKQSGAVRDQKDAMRDALRATAERRRRERE
AAGGDASAASVSPEESIMLQRRSAFARLPGKMRHRSAQIAARAPANGQGS
AGGEKINIADLFGLDAEL*
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mRNA from alignment at P-wetherbeei_contig599:5665..8433-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig599.2.2 ID=mRNA_P-wetherbeei_contig599.2.2|Name=mRNA_P-wetherbeei_contig599.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2769bp|location=Sequence derived from alignment at P-wetherbeei_contig599:5665..8433- (Phaeothamnion wetherbeei SAG_119_79)
CACGCCGAGGAGGGAGCTCGAGAGACAGTGGGGGCGGCGGCGGGGGTGGC
GGCGACGGCACCGGCGACCACGCGCATGGTGGCGACCCGGTGGAGCGGGA
GTCGCGGCGGATTCGGGTGCGGGCGCTGGAGGGACTGTTGCTCAACACGT
CCGACCAGGTGAGGGGAGGATTATTCCCTGGTGTTGTTTGGCAGGCCGCG
TGCTTGCTTCTCATGGCTCTCCGTCGGTGCGACTTCGCTGTGTCGCTACG
TTTTCCTTTCACCTTTGTCTCAGCTGGTGCTGTTGAGGAGGCGTAAGCCA
AAGAAAGGGTCGACTTCTATCCGCACTCGCTGTGTCCAACCACTCTTTGT
CTCCTCCTTTTTTTGCCTTCGCTGCATTCGTTGCCTTCCCACCCCTCACC
CTTCTCTTCCCTCCGTCTTCCTCCTGCAAACGAAACGAAAACAAAGCAGG
TGGCATACGCTCTGATCATGTTCATCGTGGCTGGATTGACGCTGGGCGAG
GGCCTCGTACTCCGCCACGCCCTCATGATGGCGGGGCGGGTCGTCGAGCG
CGTCTGGCGAGAGCCGCGCTTCGCAACGGGGCTTGGCTACCACCTGTTCG
GCTCAGCGGCGGCGCTGCTGACGGAGGAGCCCAAGTGGCTGCGGGGCAAC
GAGTGGGATGTCCTTTCTCTGGTGCGCTTTGGGCGTTCTATTCTGCCGTT
TGCCGTTTTTTGGCCGTTGTGAACGAGTAACGGTTTCGGGACGTAACTTA
GTCTTTTTTTTGTATTTTTGGTCTCGGCGGGGTCTCAATGGGTTGGCCTA
TCAGTTCAAGGCGGGCGCCGTGTCGTTGGAACTGTTTCTCTGACCGGCTG
ACCGATCGCCGTCGGCTGATGGCACCCGTCGTATTCGGATCTTCTCTTTA
CTCGTTTTATGTGCCTATTTCCTTGTCGCACTCCGAAACTGAAGCATGTT
ACTATCCCGGCGCTTCGACGCGCCTTCTCTTTTACCGCCGTTTCGTGTCT
AATCGCCGTACTGCGCTTTGTCGCTGCCCGCACAATTTTTCTTCACAATC
CTTCACGTAATAACCCCAGGCGCGGCTGATATACGTCAAGCTCGTGATGG
GGGGCACGGCGACGGACGCGCAGGCCAGCAACGGGCGGCGGACGCCGGTG
TCGGACATCCCACGCCGGATCCTGCTCGAGGTCGTCGGACTCCCACCGGC
CGCCATCAGTGAGTGGAAAATTGGCAAAAGGGGATTTTGTTTTCTTATCT
TTGACGCCGCATTGGCTGGAGGTGGGTCGCCTTCGTCGCCTCACTTGCCA
AGCTTCTGAGTTTTCTGTGCGTTCTACTCGCGTCTCGCTCATCGGCCCGA
TGCGACCTTTCCTTTTCTACCGTTTGACTGGCCGCGACTTATATAGACGC
GTCAGTAGTTTTCTTCACCAACCACTTTAACGACCTGGCATTTTCCATTC
CCATGTGTTCCTGTCTTTGAATTCTTTCTGTCATTTCTTCCTGCAGACGA
GCTGGAGGCCAAACTGAAGCAGTCGGGCGCTGTGCGTGACCAGAAGGACG
CCATGCGAGATGCGCTGCGGGCGACGGCGGAGCGGCGGCGGCGGGAGCGC
GAGGCGGCCGGCGGTGACGCAAGCGCTGCATCGGTGTCGCCGGAGGAGAG
CATCATGCTGCAGCGCCGCAGCGCCTTCGCCAGGCTGCCGGGCAAGATGC
GGCACCGCAGCGCCCAAATCGCCGCCCGGTAAGGACGGAACGGTGCTGCA
ACAAAAATTGAAATGGCCTAAAATGCTGCTATTGCAGCTCCTTGGTCCGG
GTTCGTGGAATCGGCAGTCGCGGCGGTAATGACTGCCAGCAGTAGCGCCG
GCCGCACGTTTTTGCTGGAGAGTTTGTAATGCGGAATTTTTCTAATGTCG
TTTACTTCTTTCGTCTCTCACTTCGATTGTGAAGCTTGTCCTTCCAACCG
ACAGTGCCTGTGCGGTCCTTTATTCTCTTTTATCTGCGCAGGGCGCCGGC
TAACGGCCAGGGCAGCGCCGGCGGCGAGAAGATTAACATTGCCGACCTCT
TCGGGCTGGATGCCGAGCTGTGAACGCCACCCGAGGCGAACAGGAGACGG
CCGAAGGGCGACATCGGCACTATAACGACCGCCTCGGCGGCGGCTGAGCT
GTTACCCGGCAGCAGCAGCGGCGGCAGCACGATCAATTTCGGCCACTGCG
AGACGATGGCGAATTATTCATGGCAGGCGAAGTGGGTCGGGGAAATCTCG
GCGGCAGCGCGCGCTCAAAGATAGGCGAGGCGGCGGGTGCACATTCCTAA
CTAACGCTACCAAACGGCGCGATCTCCGCCGCCATCGGAAGCAGCGCGAG
CTTTCTACGCATCAATGGCGCCGCGGGCGGGTTGGGCGAGCCGTCGGGCT
GCGCAGGAATGGTGCCAAGTAGTCATAACTTCTTCATGCCCGCAACTGCG
GGTGGGAAAGCAAGGGAAAGAGAGGGCGGATTGTAGGTAGAGAGGGAAAT
CACAACACATGGCAGATGACGATTCATGGTCGCCACTGGCGCTTGCGCAA
GGGAATGGGGGGCGGGTCCTTGGAGGCTCCTGTCCCACCGACGCAGCCAG
GCTCAGCGGCGCATCATCACACAACAAGGAGAGCGGGCAGAGGGCGGGGC
CTGGCAGCGCTGGAAAAGAAGCGGCGCCTGCCATGCGTACGTGGAGGGTG
GCATCGCAGCGCAAAGGCTTGTCTCAGGCGCGCTGCTAATGAAGAGTTGC
ACCTTCATAATGGTACTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig599:5665..8433-

>mRNA_P-wetherbeei_contig599.2.2 ID=mRNA_P-wetherbeei_contig599.2.2|Name=mRNA_P-wetherbeei_contig599.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=657bp|location=Sequence derived from alignment at P-wetherbeei_contig599:5665..8433- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCATCGTGGCTGGATTGACGCTGGGCGAGGGCCTCGTACTCCGCCA
CGCCCTCATGATGGCGGGGCGGGTCGTCGAGCGCGTCTGGCGAGAGCCGC
GCTTCGCAACGGGGCTTGGCTACCACCTGTTCGGCTCAGCGGCGGCGCTG
CTGACGGAGGAGCCCAAGTGGCTGCGGGGCAACGAGTGGGATGTCCTTTC
TCTGGCGCGGCTGATATACGTCAAGCTCGTGATGGGGGGCACGGCGACGG
ACGCGCAGGCCAGCAACGGGCGGCGGACGCCGGTGTCGGACATCCCACGC
CGGATCCTGCTCGAGGTCGTCGGACTCCCACCGGCCGCCATCAACGAGCT
GGAGGCCAAACTGAAGCAGTCGGGCGCTGTGCGTGACCAGAAGGACGCCA
TGCGAGATGCGCTGCGGGCGACGGCGGAGCGGCGGCGGCGGGAGCGCGAG
GCGGCCGGCGGTGACGCAAGCGCTGCATCGGTGTCGCCGGAGGAGAGCAT
CATGCTGCAGCGCCGCAGCGCCTTCGCCAGGCTGCCGGGCAAGATGCGGC
ACCGCAGCGCCCAAATCGCCGCCCGGGCGCCGGCTAACGGCCAGGGCAGC
GCCGGCGGCGAGAAGATTAACATTGCCGACCTCTTCGGGCTGGATGCCGA
GCTGTGA
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