mRNA_P-wetherbeei_contig5985.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5985.1.1
Unique NamemRNA_P-wetherbeei_contig5985.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5985contigP-wetherbeei_contig5985:1773..2414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size642
Hectar predicted targeting categorysignal peptide
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.9574509-UTR-P-wetherbeei_contig5985:1772..18161683186879.9574509-UTR-P-wetherbeei_contig5985:1772..1816Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5985 1773..1816 +
1683186879.980546-UTR-P-wetherbeei_contig5985:2164..24141683186879.980546-UTR-P-wetherbeei_contig5985:2164..2414Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5985 2165..2414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.9706671-CDS-P-wetherbeei_contig5985:1816..21641683186879.9706671-CDS-P-wetherbeei_contig5985:1816..2164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5985 1817..2164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5985.1.1prot_P-wetherbeei_contig5985.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5985 1817..2164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5985.1.1

>prot_P-wetherbeei_contig5985.1.1 ID=prot_P-wetherbeei_contig5985.1.1|Name=mRNA_P-wetherbeei_contig5985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MWAASRLAVAVAACLSAGSRGFYVSRILHPRCKSTASSREMAMKSSPDPP
AFCAHTVFAGAIAAALLSGSLLVCPASAEGSQAVDILYSSLINKVSAQAT
FVAVDEDGARYSQVR*
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mRNA from alignment at P-wetherbeei_contig5985:1773..2414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5985.1.1 ID=mRNA_P-wetherbeei_contig5985.1.1|Name=mRNA_P-wetherbeei_contig5985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig5985:1773..2414+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAGACGTCGACGGAGCGGTGGAGAAGGACTGAGGGCAGGAGAATGTGG
GCTGCCAGTAGATTAGCTGTAGCGGTCGCAGCATGCCTTTCGGCAGGGAG
CCGTGGATTCTATGTATCGCGCATCCTCCATCCTCGATGCAAGAGTACGG
CGTCCTCTCGTGAGATGGCAATGAAATCTTCACCAGATCCGCCGGCATTT
TGCGCACATACTGTGTTTGCGGGCGCCATTGCAGCAGCGCTCCTCTCCGG
GTCGCTCTTGGTATGTCCGGCATCGGCCGAGGGATCACAAGCGGTTGATA
TACTTTATTCGTCACTGATTAATAAGGTCTCGGCTCAGGCGACGTTTGTG
GCTGTTGACGAAGACGGCGCACGTTATTCTCAGGTTAGGTGACATTCCCC
AAATTTGACATTCCGCTCTCCTATCAACGACTTAATTAGACATTAGTAAG
ATCGTTTCATCGACTGTTCTTTAACACTAGCTTCGCAGCAAACTCTGAGT
CAAAAACTGAGTCCATCCTAGGCATGCGACGCCAACTAGATGAAATGCAA
TGTGTACCAGGAGTTTTGCAGCGTCGCTGAACACCAACGAACACAAAACA
AATCCCCTCCGTCCATTACCGGCACCATAAAACCCGCAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5985:1773..2414+

>mRNA_P-wetherbeei_contig5985.1.1 ID=mRNA_P-wetherbeei_contig5985.1.1|Name=mRNA_P-wetherbeei_contig5985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig5985:1773..2414+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGCTGCCAGTAGATTAGCTGTAGCGGTCGCAGCATGCCTTTCGGC
AGGGAGCCGTGGATTCTATGTATCGCGCATCCTCCATCCTCGATGCAAGA
GTACGGCGTCCTCTCGTGAGATGGCAATGAAATCTTCACCAGATCCGCCG
GCATTTTGCGCACATACTGTGTTTGCGGGCGCCATTGCAGCAGCGCTCCT
CTCCGGGTCGCTCTTGGTATGTCCGGCATCGGCCGAGGGATCACAAGCGG
TTGATATACTTTATTCGTCACTGATTAATAAGGTCTCGGCTCAGGCGACG
TTTGTGGCTGTTGACGAAGACGGCGCACGTTATTCTCAGGTTAGGTGA
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