mRNA_P-wetherbeei_contig598.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig598.2.1
Unique NamemRNA_P-wetherbeei_contig598.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig598.2.1 vs. uniprot
Match: A0A812V5Y4_9DINO (Bub1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812V5Y4_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 5.000e-9
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:    1 RLLPLQADMSSDPCTVFRSMEDRGIGTRHALFWAAWGMCAGNTGDIAGAAQIFKCGRDCGAEPASVLEECRAAFQGWLERRLRQPTT 261
            RL  + AD  S P  +FR +EDRGIGT HAL + AW  C     D   AA++++ G    AEP + L   RA F    + R+RQ  T
Sbjct:  123 RLWVMLADKESSPTNIFRQLEDRGIGTHHALLYEAWAHCLETRRDFEAAAEVYRRGLRSSAEPQARLRARRADF----DERMRQRVT 205
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BLAST of mRNA_P-wetherbeei_contig598.2.1 vs. uniprot
Match: A0A812MUZ0_SYMMI (ABCA5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MUZ0_SYMMI)

HSP 1 Score: 66.6 bits (161), Expect = 5.480e-9
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:    1 RLLPLQADMSSDPCTVFRSMEDRGIGTRHALFWAAWGMCAGNTGDIAGAAQIFKCGRDCGAEPASVLEECRAAFQGWLERRLRQPTT 261
            RL  + AD  S P  +FR +EDRGIGT HAL + AW  C     D   AA++++ G    AEP + L   RA F    + R+RQ  T
Sbjct:  969 RLWVMLADKESSPTNIFRQLEDRGIGTHHALLYEAWAHCLETRRDFEAAAEVYRRGLRSSAEPQARLRARRADF----DERMRQRVT 1051
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BLAST of mRNA_P-wetherbeei_contig598.2.1 vs. uniprot
Match: A0A812YNZ8_9DINO (FusA1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812YNZ8_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 5.490e-9
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:    1 RLLPLQADMSSDPCTVFRSMEDRGIGTRHALFWAAWGMCAGNTGDIAGAAQIFKCGRDCGAEPASVLEECRAAFQGWLERRLRQPTT 261
            RL  + AD  S P  +FR +EDRGIGT HAL + AW  C     D   AA++++ G    AEP + L   RA F    + R+RQ  T
Sbjct:  945 RLWVMLADKESSPTNIFRQLEDRGIGTHHALLYEAWAHCLETRRDFEAAAEVYRRGLRSSAEPQARLRARRADF----DERMRQRVT 1027
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BLAST of mRNA_P-wetherbeei_contig598.2.1 vs. uniprot
Match: A0A835ZG05_9STRA (Mad3/BUB1 homology region 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG05_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.400e-5
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:   19 ADMSSDPCTVFRSMEDRGIGTRHALFWAAWGMCAGNTGDIAGAAQIFKCGRDCGAEPASVLEE 207
            AD +  P   F  M+ +GIG + ALFWAAW   A   G    A    + GR+CGAEP S+LEE
Sbjct:   56 ADSTDTPNATFARMKAKGIGLQCALFWAAWAAAAHAQGHADQALAALRDGRNCGAEPLSMLEE 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig598.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A812V5Y4_9DINO5.000e-941.38Bub1 protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A812MUZ0_SYMMI5.480e-941.38ABCA5 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A812YNZ8_9DINO5.490e-941.38FusA1 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A835ZG05_9STRA1.400e-546.03Mad3/BUB1 homology region 1-domain-containing prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig598contigP-wetherbeei_contig598:7819..8514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7955.ENSDARP00000099195
Preferred nameBUB1B
PFAMsMad3_BUB1_I,Pkinase
Model size696
Max annot lvl33208|Metazoa
KEGG koko:K02178,ko:K06637
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,ko05166,map04110,map04111,map04113,map04114,map04914,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000151,GO:0000152,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005694,GO:0005737,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007088,GO:0007091,GO:0007093,GO:0007094,GO:0007135,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0030071,GO:0030163,GO:0031145,GO:0031461,GO:0031577,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044784,GO:0045132,GO:0045144,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048471,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051177,GO:0051179,GO:0051233,GO:0051276,GO:0051321,GO:0051603,GO:0051641,GO:0051726,GO:0051754,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070601,GO:0070727,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0098687,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1903046,GO:1903047,GO:1905818,GO:1905819,GO:1990234,GO:2000816,GO:2001251
Exons1
Evalue5.76e-06
EggNOG OGsKOG1166@1|root,KOG1166@2759|Eukaryota,38DN1@33154|Opisthokonta,3BEZT@33208|Metazoa,3CZNG@33213|Bilateria,489JJ@7711|Chordata,48Y3E@7742|Vertebrata,49PTT@7898|Actinopterygii
EC2.7.11.1
DescriptionBudding uninhibited by benzimidazoles 1 homolog beta b
Cds size672
COG categoryD
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.400877-CDS-P-wetherbeei_contig598:7818..84901683186879.400877-CDS-P-wetherbeei_contig598:7818..8490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig598 7819..8490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.4223652-UTR-P-wetherbeei_contig598:8490..85141683186879.4223652-UTR-P-wetherbeei_contig598:8490..8514Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig598 8491..8514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig598.2.1prot_P-wetherbeei_contig598.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig598 7819..8490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig598.2.1

>prot_P-wetherbeei_contig598.2.1 ID=prot_P-wetherbeei_contig598.2.1|Name=mRNA_P-wetherbeei_contig598.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MSSDPCTVFRSMEDRGIGTRHALFWAAWGMCAGNTGDIAGAAQIFKCGRD
CGAEPASVLEECRAAFQGWLERRLRQPTTSGGGGGGGGESGGSNSSRGGC
GAGSSNGEDGSEGVACGGASGGGGGSGKGRSGRLGATEKSGATSCAGSRC
RTDRKPDGCSKPAIFKDAGSDKSDMENNGTAALRSPLRLGQTPQPQCGRR
GSGHRNNYADAHSLSVDSITFDML
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mRNA from alignment at P-wetherbeei_contig598:7819..8514-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig598.2.1 ID=mRNA_P-wetherbeei_contig598.2.1|Name=mRNA_P-wetherbeei_contig598.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig598:7819..8514- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTGCTGCCGCTGCAGGCGGATATGTCGTCGGACCCGTGCACGGTCTT
CCGCTCCATGGAGGACCGAGGCATCGGCACGCGCCACGCCCTCTTCTGGG
CGGCATGGGGCATGTGCGCTGGCAACACGGGCGACATCGCAGGCGCGGCG
CAGATTTTTAAGTGCGGTCGCGACTGCGGCGCCGAGCCGGCTTCCGTATT
GGAAGAATGCCGCGCTGCCTTTCAGGGCTGGCTGGAGCGGCGGCTCCGGC
AGCCTACGACAAGCGGCGGCGGCGGCGGCGGCGGTGGTGAAAGCGGCGGC
AGCAACAGCAGCCGCGGCGGCTGCGGCGCTGGAAGCAGCAATGGCGAGGA
TGGCAGCGAAGGCGTTGCCTGTGGTGGTGCCAGCGGCGGCGGCGGCGGCA
GTGGCAAGGGTCGCAGCGGCCGGTTGGGAGCCACCGAAAAGAGCGGCGCC
ACCAGCTGTGCCGGCAGCCGCTGCCGGACGGACCGGAAGCCGGACGGATG
TTCCAAGCCCGCCATTTTCAAAGACGCTGGCAGCGACAAGTCTGACATGG
AAAACAACGGGACCGCCGCGTTGCGGTCGCCGCTCCGCCTTGGCCAGACG
CCGCAGCCGCAGTGTGGACGGCGCGGCAGCGGCCACAGGAACAACTACGC
CGATGCGCACAGCCTCTCGGTGGATTCAATCACGTTCGACATGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig598:7819..8514-

>mRNA_P-wetherbeei_contig598.2.1 ID=mRNA_P-wetherbeei_contig598.2.1|Name=mRNA_P-wetherbeei_contig598.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig598:7819..8514- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCGGACCCGTGCACGGTCTTCCGCTCCATGGAGGACCGAGGCAT
CGGCACGCGCCACGCCCTCTTCTGGGCGGCATGGGGCATGTGCGCTGGCA
ACACGGGCGACATCGCAGGCGCGGCGCAGATTTTTAAGTGCGGTCGCGAC
TGCGGCGCCGAGCCGGCTTCCGTATTGGAAGAATGCCGCGCTGCCTTTCA
GGGCTGGCTGGAGCGGCGGCTCCGGCAGCCTACGACAAGCGGCGGCGGCG
GCGGCGGCGGTGGTGAAAGCGGCGGCAGCAACAGCAGCCGCGGCGGCTGC
GGCGCTGGAAGCAGCAATGGCGAGGATGGCAGCGAAGGCGTTGCCTGTGG
TGGTGCCAGCGGCGGCGGCGGCGGCAGTGGCAAGGGTCGCAGCGGCCGGT
TGGGAGCCACCGAAAAGAGCGGCGCCACCAGCTGTGCCGGCAGCCGCTGC
CGGACGGACCGGAAGCCGGACGGATGTTCCAAGCCCGCCATTTTCAAAGA
CGCTGGCAGCGACAAGTCTGACATGGAAAACAACGGGACCGCCGCGTTGC
GGTCGCCGCTCCGCCTTGGCCAGACGCCGCAGCCGCAGTGTGGACGGCGC
GGCAGCGGCCACAGGAACAACTACGCCGATGCGCACAGCCTCTCGGTGGA
TTCAATCACGTTCGACATGCTC
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