mRNA_P-wetherbeei_contig596.1.7 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig596.1.7
Unique NamemRNA_P-wetherbeei_contig596.1.7
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A7S2R4Z8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4Z8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 8.270e-33
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDAS 336
            +E + P+ QDDGP+P+VAI Y  EY  +MD+FR VMA +ELS RAL+LT+ +I  NAAHYT W YRRRCL AL  DL  ELR++E +A +NPKNYQIW+H   +VER GD +
Sbjct:    9 WEGVVPLAQDDGPEPVVAISYAPEYTKLMDLFRRVMATNELSARALALTAQIIQWNAAHYTVWQYRRRCLEALRTDLRGELRYVESVAYDNPKNYQIWFHRRAIVERLGDPA 120
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: K2RP97_MACPH (Protein prenyltransferase alpha subunit n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2RP97_MACPH)

HSP 1 Score: 134 bits (338), Expect = 1.130e-30
Identity = 89/224 (39.73%), Postives = 117/224 (52.23%), Query Frame = 1 
Query:    1 FEDLDPIPQDDG-PDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDASXXXXXXXXXXXXXXXXXXXXXXXXWCLLRFGGGSGNAGASGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSSLWS-GELMYLDGLLADDVRNNSAWNHRWFVV 666
            ++D++PIP D+G P+ + AI YPEEY   M   RAVMA +E+S+RALSLT  +I  N AHYT W YR + +  LGKD+  EL ++   A +N KNYQIW+H   +V++ GDA+             XXXXXXXXXX W + RF                                                  LW  GE+  ++ LL +DVRNNSAWNHRWF+V
Sbjct:   10 WQDIEPIPLDEGGPNALAAIAYPEEYDEAMSYLRAVMAKNEMSDRALSLTEDIIHFNPAHYTVWLYRAKIILTLGKDIRKELEWLNAAALKNLKNYQIWHHRTTIVDKLGDATGEQAFIARMLAKDXXXXXXXXXXQWLVGRF-------------------------------------------------DLWDKGEIEAVEALLREDVRNNSAWNHRWFLV 184
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A8H7PPZ4_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PPZ4_MORIS)

HSP 1 Score: 130 bits (328), Expect = 1.470e-29
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDAS 336
            + D+ PIPQDDG +P+V I Y  EY   MD FRAV   +E S+R L LT+H+ID+N AHYT W YR+  L AL  DLE EL FI+++AE+  KNYQIW+H  VVVE+ GD S
Sbjct:   12 WADVQPIPQDDGANPLVPIAYSREYSEAMDYFRAVSRTNEKSQRVLELTAHIIDMNPAHYTIWQYRQSLLDALKVDLEEELNFIDELAEDKAKNYQIWHHRQVVVEKLGDGS 123
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A4S2N839_9PEZI (Protein prenylyltransferase n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N839_9PEZI)

HSP 1 Score: 128 bits (322), Expect = 1.170e-28
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDAS 336
            ++D+ P+PQDDG  P+  I+Y EEY   M   RA+MA DELSERAL +T HVID+N AHYT W YR +CLAAL  DL+ EL+F+   A ++ KNYQIW+H  +VV R GD +
Sbjct:    8 WDDVVPLPQDDGDHPLAQINYSEEYAEAMAYLRALMAKDELSERALKITEHVIDLNPAHYTVWLYRVKCLAALEADLKKELQFLNMKALKHEKNYQIWHHRQLVVNRLGDPT 119
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A7S0M885_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M885_9CRYP)

HSP 1 Score: 126 bits (317), Expect = 2.630e-28
Identity = 76/226 (33.63%), Postives = 105/226 (46.46%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERH----GDASXXXXXXXXXXXXXXXXXXXXXXXXWCLLRFGGGSGNAGASGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSSLWSGELMYLDGLLADDVRNNSAWNHRWFVV 666
            + D+ PIPQ+DG +P+V I Y  ++   MD FRA++A DE SERAL LT  VI +N+A+YT W +RR  + ALG+  + EL ++  +A+ENPKNYQIW+H    +ER     G+                          W +  +G                                                 LW+ EL + +GLL  DV NNSAWNHR+FVV
Sbjct:   13 WSDVVPIPQNDGEEPVVPIAYTPQFRETMDYFRAILASDEKSERALQLTEDVIALNSANYTVWAFRRAVVDALGRPWDEELAWVTALADENPKNYQIWHHRRCCLERGAAPAGEVPFLTAFLTDEDLEDAKNYHAFAHRQWVVQTYG-------------------------------------------------LWAEELEFAEGLLQQDVLNNSAWNHRFFVV 189
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A2N9GTT7_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GTT7_FAGSY)

HSP 1 Score: 127 bits (318), Expect = 8.530e-28
Identity = 85/224 (37.95%), Postives = 99/224 (44.20%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGD--ASXXXXXXXXXXXXXXXXXXXXXXXXWCLLRFGGGSGNAGASGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSSLWSGELMYLDGLLADDVRNNSAWNHRWFVV 666
            + D+ P+PQDDGP+P+V I Y  ++V  MD FRAV   DE S RALSLT+  I  NAA+YT WH+RR  L AL  DL+ EL FIE IA  N KNYQIW     V E+ G   AS                        W LL  GG                                                 W  EL Y   LL DD+ NNSAWN R+FVV
Sbjct:   22 WSDVTPLPQDDGPNPVVPIAYKPDFVETMDYFRAVYQADERSSRALSLTAEAIHFNAANYTVWHFRRLILEALDADLQVELGFIENIASGNSKNYQIWRW---VAEKLGTDAASKELEFTKKILSIDAKHYHAWSHRQWVLLTLGG-------------------------------------------------WKNELDYCWELLKDDIFNNSAWNQRYFVV 193
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A8H7UMB2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UMB2_9FUNG)

HSP 1 Score: 125 bits (315), Expect = 1.210e-27
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDAS 336
            + D+ PIPQDDG +P+V I Y  EY   MD FRAV  ++E S+R   LT+H+ID+N AHYT W YR+  L AL  DL  EL FI+ +AEE  KNYQIW+H  VVVE+ G+ S
Sbjct:   12 WADVQPIPQDDGENPLVPIAYSREYSEAMDYFRAVARVNEKSQRVFELTAHIIDMNPAHYTIWQYRQSLLDALKLDLNTELDFIDVLAEEKSKNYQIWHHRQVVVEKLGNGS 123
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A1X2HXX9_SYNRA (Prenyltransferase alpha subunit repeat protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HXX9_SYNRA)

HSP 1 Score: 125 bits (313), Expect = 2.030e-27
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDAS 336
            ++D+ PIPQDDGP+P+V I Y  +Y   MD FRAVM  +E S+R L LT+ +ID+N AHYT W YR+  L A+  DL  EL +I +IA E  K+YQIW+H  VVV++ GD S
Sbjct:    9 WKDVQPIPQDDGPNPLVPIAYGNDYREAMDYFRAVMRTEEKSKRVLELTADIIDMNPAHYTVWQYRQDTLFAINADLRAELEYINEIASEQAKSYQIWHHRQVVVDKLGDGS 120
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A507FQL6_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FQL6_9FUNG)

HSP 1 Score: 125 bits (313), Expect = 2.490e-27
Identity = 81/226 (35.84%), Postives = 104/226 (46.02%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDASXXXXXXXXXXXXXXXXXXXXXXXX----WCLLRFGGGSGNAGASGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSSLWSGELMYLDGLLADDVRNNSAWNHRWFVV 666
            F D++PIP DDGP+P+  I YP EY A MDVFRA   +DE S+R L LT+ +ID+N AHYT W  R+ CL A   DL+ EL++   +  E+ KNYQ+W+H  +VV R G                     XXXXXX    W +  F                                                   W  EL  +D L+  D RNNSAWNHR+FV+
Sbjct:    7 FADIEPIPMDDGPNPMSPIAYPAEYSAAMDVFRACAKVDERSKRVLDLTAVIIDMNPAHYTVWKVRQDCLFATEADLKAELQYASNVGFEHHKNYQVWHHREIVVTRIGHDEDVIRGELRYINEQLDADCXXXXXXXXRQWLVKHF-------------------------------------------------QFWEQELADVDKLITSDFRNNSAWNHRFFVL 183
[Close]
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Match: A0A2S5B4V5_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5B4V5_9BASI)

HSP 1 Score: 126 bits (316), Expect = 2.590e-27
Identity = 82/226 (36.28%), Postives = 111/226 (49.12%), Query Frame = 1 
Query:    1 FEDLDPIPQDDGPDPIVAIDYPEEYVAVMDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLEPELRFIEQIAEENPKNYQIWYHXXVVVERHGDASXXXXXXXXXXXXXXXXXXXXXXXXWCLLRFGGGSGNAGASGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSSLWSGELMYLDGLLADDVRNNSAWNHRWFVVHNCG 678
            +EDL+P+PQ+D PD +V I Y E Y   MD FRA++A  E SER L +T  +I +N  HYT W YR   L  +  +L  EL  ++Q+ + + K+YQ+W H   +V    D S              XXXXXXXXX W LL F   +  A ++  +                                    ++W GEL Y D LL +D+RNNSAWNHR+FV    G
Sbjct:   18 WEDLEPVPQNDAPDSLVPIAYDEFYRDAMDTFRAIVAKQERSERTLEITKLIIQMNPGHYTVWKYRADTLLQMQTNLSAELDLLDQLVKHHLKSYQVWQHRRTIVLALDDPSRELDFTAKALALDAXXXXXXXXXQWVLLHFWSSAAGARSASEE----------------------------------QRTVWDGELAYADKLLEEDLRNNSAWNHRFFVAFESG 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig596.1.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2R4Z8_9STRA8.270e-3358.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K2RP97_MACPH1.130e-3039.73Protein prenyltransferase alpha subunit n=1 Tax=Ma... [more]
A0A8H7PPZ4_MORIS1.470e-2956.25Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A4S2N839_9PEZI1.170e-2855.36Protein prenylyltransferase n=1 Tax=Ascodesmis nig... [more]
A0A7S0M885_9CRYP2.630e-2833.63Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A2N9GTT7_FAGSY8.530e-2837.95Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A8H7UMB2_9FUNG1.210e-2754.46Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A1X2HXX9_SYNRA2.030e-2752.68Prenyltransferase alpha subunit repeat protein n=1... [more]
A0A507FQL6_9FUNG2.490e-2735.84Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A2S5B4V5_9BASI2.590e-2736.28Uncharacterized protein n=1 Tax=Rhodotorula taiwan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig596contigP-wetherbeei_contig596:2648..9452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35725.K2RP97
Preferred nameRAM2
PFAMsPPTA
Model size6130
Max annot lvl4751|Fungi
KEGG rclassRC00069,RC03004
KEGG koko:K05955
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004659,GO:0004660,GO:0004661,GO:0004662,GO:0004663,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005953,GO:0005965,GO:0006464,GO:0006807,GO:0007323,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010467,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0018344,GO:0019538,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051604,GO:0051641,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
Exons6
Evalue1.15e-24
EggNOG OGsCOG5536@1|root,KOG0530@2759|Eukaryota,38GA2@33154|Opisthokonta,3NV0Q@4751|Fungi,3QKGG@4890|Ascomycota,200KX@147541|Dothideomycetes
EC2.5.1.58,2.5.1.59
DescriptionProtein prenyltransferase alpha subunit repeat
Cds size921
COG categoryO
BRITEko00000,ko00001,ko01000,ko01006
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig596.1.7prot_P-wetherbeei_contig596.1.7Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig596 2866..4088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.2548747-UTR-P-wetherbeei_contig596:2647..27201683186878.2548747-UTR-P-wetherbeei_contig596:2647..2720Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig596 2648..2720 +
1683186878.2721875-UTR-P-wetherbeei_contig596:2854..28651683186878.2721875-UTR-P-wetherbeei_contig596:2854..2865Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig596 2855..2865 +
1683186878.3017082-UTR-P-wetherbeei_contig596:4088..57351683186878.3017082-UTR-P-wetherbeei_contig596:4088..5735Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig596 4089..5735 +
1683186878.3130908-UTR-P-wetherbeei_contig596:5771..64391683186878.3130908-UTR-P-wetherbeei_contig596:5771..6439Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig596 5772..6439 +
1683186878.3235714-UTR-P-wetherbeei_contig596:6616..80291683186878.3235714-UTR-P-wetherbeei_contig596:6616..8029Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig596 6617..8029 +
1683186878.33324-UTR-P-wetherbeei_contig596:8055..94521683186878.33324-UTR-P-wetherbeei_contig596:8055..9452Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig596 8056..9452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.2799768-CDS-P-wetherbeei_contig596:2865..30741683186878.2799768-CDS-P-wetherbeei_contig596:2865..3074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig596 2866..3074 +
1683186878.2878072-CDS-P-wetherbeei_contig596:3376..40881683186878.2878072-CDS-P-wetherbeei_contig596:3376..4088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig596 3377..4088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig596.1.7

>prot_P-wetherbeei_contig596.1.7 ID=prot_P-wetherbeei_contig596.1.7|Name=mRNA_P-wetherbeei_contig596.1.7|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=307bp
MDVFRAVMAIDELSERALSLTSHVIDINAAHYTAWHYRRRCLAALGKDLE
PELRFIEQIAEENPKNYQIWYHRRVVVERHGDASHELPFVSRVLEDDAKN
YHAWSHRQWCLLRFGGGSGNAGASGGDSGTSDGNVSGIASASASGPGKKS
SEAASSASAAVSSSLWSGELMYLDGLLADDVRNNSAWNHRWFVVHNCGQQ
VRRREKVFSHYPFASCSAFSLPDLFFLIDRFPLFNTGGQPSPAFPSLVPI
SWARVSGWVESESTECRLVWPPEPGAQDSGETYFGLYLFVHVFGCRAPSK
CFLSRP*
back to top

mRNA from alignment at P-wetherbeei_contig596:2648..9452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig596.1.7 ID=mRNA_P-wetherbeei_contig596.1.7|Name=mRNA_P-wetherbeei_contig596.1.7|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=6805bp|location=Sequence derived from alignment at P-wetherbeei_contig596:2648..9452+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGAGGATTTGGACCCGATCCCACAGGACGACGGGCCGGATCCGATCGT
GGCCATCGACTACCCCGAAGAATGTGAGGCTCTTTCGATTACTTTCCTGT
GTTGCAACATAACGCAGGCTCTCGCGTTCCAGTCTTTTTCCTCTGAGCTG
CCCTCGCGCGAGAAAGCAAACTTCACTTCGACCGCCTCTTTCTTCCGTCC
TCGCCAGATGTAGCTGTCATGGACGTGTTCCGTGCCGTCATGGCCATTGA
CGAACTGTCGGAGCGCGCCCTTTCGCTGACGTCGCACGTGATTGACATCA
ACGCGGCGCACTACACGGCCTGGCACTACCGCCGCCGCTGTCTCGCCGCC
CTTGGCAAGGACCTCGAGCCCGAGCTGCGCTTCATCGAGCAGATTGCCGA
AGAGAACCCCAAAAACTACCAAATCTGGTGCGTTCTTTTTACGTCATTAC
AATTTCTCCCATCCCACTACCTTGCCTTTCGTTGTGCTGTCTTGGCGTTC
ACTCCCAATATCAAGCTTGCGCTTGCGGCTTGCGGCATGCGCTGCTAGAT
TGGAGGCGTTAAACCATTGTTCCGGTTGATGGCTGCCGAAAAGAGCCGTT
TGGATACGGAAATCAGGTCTGCCTGCGTTCACCACCTCCCAACGTCCCCG
TCGGCTCCACCGCCCGCACCATTCTTCCCTCTCTCTCCCGTCGCATCGCG
CCCTCAAAACCCGCGCGCCGCGCCAACAGGTACCACCGGCGGGTGGTGGT
GGAGCGGCACGGCGATGCCTCCCACGAGCTGCCCTTCGTGTCGCGCGTGC
TCGAAGACGACGCCAAGAACTACCACGCCTGGTCCCACCGCCAGTGGTGC
CTCCTCCGCTTCGGCGGCGGTTCCGGCAACGCCGGCGCTTCCGGCGGCGA
TTCCGGCACCAGCGACGGCAATGTTTCCGGCATCGCTTCCGCTTCGGCTT
CCGGGCCGGGGAAAAAGAGTTCCGAAGCAGCGTCTTCTGCGTCGGCGGCC
GTTTCGTCGTCGCTGTGGTCGGGGGAGCTGATGTACTTGGACGGGCTGCT
GGCCGACGATGTGCGCAACAACTCCGCATGGAACCACCGCTGGTTCGTCG
TCCACAACTGCGGCCAACAGGTGCGGCGGCGGGAAAAGGTGTTCAGTCAT
TATCCGTTTGCTTCGTGTTCGGCATTTTCTTTACCTGATTTGTTTTTCTT
GATTGACAGATTCCCTCTTTTCAATACAGGGGGCCAACCGTCACCTGCCT
TTCCTTCTCTGGTTCCTATATCATGGGCGCGGGTATCTGGTTGGGTAGAA
AGCGAGTCGACGGAATGCCGGCTGGTTTGGCCACCAGAACCTGGGGCCCA
AGACTCGGGGGAGACTTACTTCGGCTTATATCTGTTCGTCCACGTTTTCG
GTTGTCGGGCGCCGTCAAAATGCTTCCTGTCTCGTCCTTAGTCCGCTGCC
GGCTGCTATTAGCGCGCCGCCGCCTCCTCTCCCCGGACGTGCAACGGCCC
GATCCGGCTTGCCTTGAAGCAACGATTTGAAATATGCCACAGTATAGAGA
GACATGCCGCGCGCCCCAAGCCGGCTCCTTTCTTCTTGCGCGATCCTGTT
CTGACACGAGCGCCAGGAGCCTGTGCCGCCTATTGGGGGCGCTTGCAGGG
CGAGGCGTGTCACACCGCCGTTCTTGCAAGCAAGAGAAGGGAGGTGGCTC
GTAGGTCCGGCCTGCGCGAGGTCGGGCCTGCGCGAGATCGGGCCAGGTTG
AAGTTGTCCGTGGCGAGGCTTGAGAACTTGAGGGGTTTGCTAAAATCAGG
TGGCGGTGGACCTATATAGCACGAGAGCTCAGGAGATAGCAACCAGTCCT
GTGGCCGCTTCTGCGCAAGCCGATGAGAGACATTGTGATCTCGACGGTAT
TTGTCCCTGCCTACAATTACGGCCTTGAAATTGTTTTTCAGTGTTGCTGT
GTGCTTGCTTACGTTTCTGTGCGCCGCCGGCTGCGGCTTGCCGGCAGCAG
GGAATCGCTGCGACGTGAGGATTCCGACCTCCATCTCCTTGGGCCACGGC
AGCTTTGCCTGCGTGGGGAGAGGGATTAATATGCTCTGTGGTGCGAGGAT
AGCGTTCCTTCCTTTCGTCTTCTTTTAATACGAGAGAGAGAAGAATGGAA
ACAAGTATCGGCGAATGCAGGTGGGACGGTTGTTTGTGGTGCGGGCATTT
CCTTGTGCCGCCACGATTCTTAATTTGTGTTGCGTGCCGAAGGCTGCTGC
AGGCTTGCGCTTCAACCTGCATTTTCATTTTTCACCTGTGACGGCCTTTT
GGTTGGCGGGGCGGGCATCCAGTAGTTGTTTTCCCGCAGAGAGATACGAG
GCGGCCGGCAGGGCAAATCTCTCTCCCCCCCCACACGATGTGTCCTGACG
CCGAATCACATCTGGTTGCCGAGAGAGGGTGTACTTTAGTAAGACAGCTG
CGCCTCGCTGCTGCTGGATCATTTTCGTGAGCGTTTCCGTGTCATTTAAT
CATATCTTTCACTGGCCGATGGCCAGACGTGACCTCCGCGGAGGTGTCGG
TCCTGCTTTCTTCTCATCGGGATATTGGCTTTGGCTAGGTGAAAGGCGAG
GTTTGATCTGACCTGATGACCTGCCTGGAGGGGCCGTTTGGTACAAGGTT
CTGTTCAAATTGAGTCAGGCCTGGGGAGCTTGGCAGGCAGAAATGTTCGC
CGGTTCGCAGGTGCAGGCGGCGGCAGCGACGGCGGCGGACCTGTGAAGGA
TTAGGGGTCAGGGAGGCAGTGGTCGGTCCGGTGCCCACTTCAGGTGGAAG
CCGGCATGAGAGACGGCTATCATTAATAGACTTGTGAAGTCGTTTTCCGG
CGCGGTCTGCATAGATTTCTCATGTAGTTGCATTCTACCGCCCTGCGGTA
AGAACGCAGCAAGGTGTCGCTGCGGCGTGAGGATTGAGGCCTTAGACTCC
ACCGCTTTCTTGGGGCCACTTGTCCTGCCGTGCCTTTGGCCAGTGCCCCC
GTGCCAAGGGAGGGAGTTCTCTCGCTTTATCTCCGTTGTCCTGTCCCGTT
CCCTTCCAGACAGAAAACGGAGGGAGAAGTCAGTAGAAGCGTGAACCTGG
TTCCCTTTCCCCACACCGCCATAGTTCTCAATTCATTGCTGCGCGCCGCA
GCTTCCTGCGTTTTGTTTGCTTTGAAATCCGGTGACCATTCTGTATGTCG
GATTCGGATTGGGTCGTGATAGTGAACGAGATTAGCCTTCTTTTTCCCCT
CTTGCCAGCACTTTCATTGCGTCTCACCTCGTCTTGAGTCCGCCGGCGGC
TCTTCCTAGCGCACCGCGCGCTCCTGCCCCCGATATGCGGCGACCCGATG
AACCTGCACGGAGGTTGTCAGTGCCCCAGCCGAAGGAGTAATTGAAACAG
CAACACATAGCGAGAGTGCGACACACCGACCTACGGTTATCTCTCTCTGC
GATCCGGAGGCGGCAGTTGCATGCAAGGCCAGCGGCTGACACCGCCCGCC
ACAGTGCAAACAGCATCCCGTCGCGCTGCGACACTTTTTGCATGCAAAAA
AGGAAGGCATCTTGCTGGCTGTCCGTGCTTTGTCGCGGATCGACACGAAG
CCGCCAGAACTAGGCTGCAGTGGACCTGCAACGGACGAGAGGTAGCGGCC
GACCTGGTACCCGTGTTTATGGAGAAGAACGAACGCAGCGGACCGTTAAA
TGGCTTTTCCTCGCACGCAGAAGCACCAGGGAATTGTGGGATCGTGTGGA
CGTCGGCTGCGACCTCCCCGCTTTTGCGGCACAGGTCGCGCTGCCTCCGT
GCCCGCCGTGCCGTCGGCTGTCCCGCCTGCGTGGAGTGAAGAGCTGAAAG
AACTCCAGCGCTCGGTGCGACGACGCGAGCAGCTTTTAAGGTATGCTCTC
TTCTCTTTTCTCAAAGACAAGAACGGAGAAGGAAACATGCTATTGTATGT
CAGTAGGGCATGGCTCGAGGACCGGTGAAAATCGTGGTCGTCGGATTCCC
CACGATGCTGCACTCTTCAATTTAGTCGCTCCGTTTCCCAGGCTGCTGCA
AGTTGGTGCTTATAGCGGTGCGTTGTCCTCCTCTGCTTCTTAACGGTAGC
AGTGGGCTCGTGCACAATCAGCGTGGCAATCAGCAGCATTAGGAACGGGC
CATAACTCCGCCTGCACTTCATAGCTTGGAATGGCCCCCGCGGCTCGCTG
CTCTGCTTCATACACGCTGTTTCCTTGTATGCTGTCGTCCGTCTTGTATG
CCTTCTGCATGTTCGCTCTATTCTTTAATTTCAATGAGAATGCTCGAAAA
AAGCCCGCGCAAGGCAACTCTTTCGAACGACTATCATGGAGAGGTATTGG
TTCTGGGCGTGCCTTTTGTCAGTGCTTCCCACTGCCTCCTGCGTGGTCGT
GAGTCCGCCGCTGTCTATCCATGACGCCGGTCCCTCTCCCGACATGCGGC
AAACCCCGACTTGACCTGTGTCCAAGGAGAAATCAAACCGCAGCGCGTGG
ATGACGTTTAGATTTTGAACACGAAGGACATAACGCGAGCACCGGCGGTC
GGCGCAGCCCGCTGTGAGGGAGCAGAATTGTTTTCTTTCTGGCCATCGTC
GACTTTGCGCGCAAAACTTTGCATGCAAAGAGAAGGGCAGCTCGCTGGCT
GTCTGATTTTGTCTTCTTTGTGTCGGCTTTGCACGATTCCGAGCCGCGCA
TCTCCTCCCAGCCATTTGTGCCTTTGCGGCCGGGTATAATCTAGCGTAAC
GAGGCTAGCTCAGTTTCCCGGTAGTCTTGCCAGAACGAGGCGAGGGCGGA
CTTGCGAAGAACGAGAGGCCTGGAGGCAGGGCAGATCCGTTGCCTGCTGT
TATGGAAGCGGCCAGGGGTCTGTCTTGTTTGTGCCGGTAACTGTGTCGCA
GTTTCGCTCAATATGCGCACACCTTGGCTTCGACCTCTACCGCTTTCGGG
GGGCGTTCAAATTCGTGCTGTAGTGCGAAGATTGCTTGCTTTCTAAGTAT
CGGGGGCATGTCGATGTATGCTGGTTGAAGTTCTCGTTAAATCATTGAAA
GCGTGTAAGGGCGAGGCTTGGTTCCCGCCCCGCCAATGTTCTCACAGTAT
TCCTATACCAACGGCTGTTCCGCATATGAGCACTGGTGCCCGTGCTGCCG
TTATGCCGTCAGTCTGGGCATGCCGCCCCGCTGACGCATTCCAAAGGGAT
CCGAGAGGGAGATTTCTTTTTCGGTGCGCCTTTTGGCACGAGTCTTGGCT
AGCCAACTTGTGTCTCGAAGATGGCAGGTGAATGCGGGCTGGCGAAGAGG
TCGCCGCAAGGCTTCCTGACCCTCAGTTGCGGATGGTCGTTTTCTGCTCC
ATTCCTCTCCGGCCGTTAATAGTTCTGCATATGCCGTTCTGATATGAAGG
ACGGCGAGCTGGCCGCGTCTTCGGTTGCCACGAGATTCGTCCAATGTTTT
CGGAGACAACTGACTCTTCTCGCTCGTTTTTGAATCTGTGTGAGTTCCAT
AGTAACTTCAGTCTTGTGCGACGTTTCTGGGTGACGCCTGTAGATGGATG
TGAAGGTAAGATTTGCCGCCCACGGCCCACGATTCAAAAACGACGAAGTT
CGGCTGGACGTCACCCAGCTAGTCTAGACACACCAGGCATGCGGCCGCTG
TCGCTGCACAGCGTCCACATGGCCGAGTCGACTTTCTTTTCCGTGGACAG
GAGAAGCAGAGAGCTGTTCTGCAAGGCGTTTCAGAACTGATCACCGCGGT
TATCCAGAAAACCTTAGGCTGCGGTCACTCGGCAAGAGGCAGCAGCCAGA
TGCTGCTGGACTGCAACGGTCAGAAGATTTTGGGTAGCTGACTTGACCGT
GGTCGACACCTCCCTGTTGTTGCACCGCAGGGGCGCGTCACTCCCGGCAG
AGGTTCTGTGTAGCACTTCTCGCCTTTGATGTTTTTGGGTAGGTATGGTA
GTTTTCTGCGTTCCACTGCTGTGAAGGAGAAGGTTGTCTTCCGCTTGCGC
CGCTTGCGGTCGATTGCTCGGCAGTGGTCGATTGGCCAAGTTGCAGTCCT
TCTGGCGTTCTTGGATGTTGAATTTTACCTGTTTCGTGTCCGCCCACCAA
TGGTATCCTTCTGCAACATTTGTTCGCGGCGCGGAGAGACCTTAATCGAA
AGGTACATGTAATACACTCGCCGCGAAGCTCCGGCTGGAGGTGGGAGAAT
GCCATGGCTCTGAGGCGGTGCAGGCCGATCGTCCAATCGTCTGGATTAAT
TTGGATTGCCCGTGTTCGATGGAGTTAGATGTTTGTGCGTGGGCTTTGCC
TTTCCCCGGAAAGGAGGAGGTGGTAAAAAGAGGAATCTATTTTATGTTGT
GCGAGGGACGTGGAGATGGAGGGAGCTCCTGGAACCTGGTTTCTTTTCTG
CGTTCGCTCGTTCTCCTGTTTGCAGCTAGTGAAAGCCAGCAAGTCGAGCG
TCGCAGTGCGCCGCCGGGGCCGTGAAAGCCGCGTTCTTAGCGCTTCCAAG
TGACCTGGAGAGCTACCAGGGGGCATGGACACGCTAGGTGTCCACTAACT
CCATCACTGCATGAGAGAGGGCTTGAACTGCCTTAGCCACTGCCTTGTAC
GGCTGTCTCCAGCCGAGAACACAGCATGATAGCGGAACCATTTGGTCGTC
GACAAAGAACGACATTTTGCTGCGTGTCAAAAACATCACACCACTTCCTT
GAATTTTCCCTTCCTCATCGAGACCTTCCCGTTTCTTCTCCCCCCCTTGC
CCCTGCTCGACTCTGCTGTGCGGTTCGCGGCGGTGGGCGGCTGGCGGCAG
GTGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig596:2648..9452+

>mRNA_P-wetherbeei_contig596.1.7 ID=mRNA_P-wetherbeei_contig596.1.7|Name=mRNA_P-wetherbeei_contig596.1.7|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig596:2648..9452+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGTGTTCCGTGCCGTCATGGCCATTGACGAACTGTCGGAGCGCGC
CCTTTCGCTGACGTCGCACGTGATTGACATCAACGCGGCGCACTACACGG
CCTGGCACTACCGCCGCCGCTGTCTCGCCGCCCTTGGCAAGGACCTCGAG
CCCGAGCTGCGCTTCATCGAGCAGATTGCCGAAGAGAACCCCAAAAACTA
CCAAATCTGGTACCACCGGCGGGTGGTGGTGGAGCGGCACGGCGATGCCT
CCCACGAGCTGCCCTTCGTGTCGCGCGTGCTCGAAGACGACGCCAAGAAC
TACCACGCCTGGTCCCACCGCCAGTGGTGCCTCCTCCGCTTCGGCGGCGG
TTCCGGCAACGCCGGCGCTTCCGGCGGCGATTCCGGCACCAGCGACGGCA
ATGTTTCCGGCATCGCTTCCGCTTCGGCTTCCGGGCCGGGGAAAAAGAGT
TCCGAAGCAGCGTCTTCTGCGTCGGCGGCCGTTTCGTCGTCGCTGTGGTC
GGGGGAGCTGATGTACTTGGACGGGCTGCTGGCCGACGATGTGCGCAACA
ACTCCGCATGGAACCACCGCTGGTTCGTCGTCCACAACTGCGGCCAACAG
GTGCGGCGGCGGGAAAAGGTGTTCAGTCATTATCCGTTTGCTTCGTGTTC
GGCATTTTCTTTACCTGATTTGTTTTTCTTGATTGACAGATTCCCTCTTT
TCAATACAGGGGGCCAACCGTCACCTGCCTTTCCTTCTCTGGTTCCTATA
TCATGGGCGCGGGTATCTGGTTGGGTAGAAAGCGAGTCGACGGAATGCCG
GCTGGTTTGGCCACCAGAACCTGGGGCCCAAGACTCGGGGGAGACTTACT
TCGGCTTATATCTGTTCGTCCACGTTTTCGGTTGTCGGGCGCCGTCAAAA
TGCTTCCTGTCTCGTCCTTAG
back to top