mRNA_P-wetherbeei_contig5955.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5955.3.1
Unique NamemRNA_P-wetherbeei_contig5955.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5955.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5955contigP-wetherbeei_contig5955:1391..2201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size689
Hectar predicted targeting categoryother localisation
Exons2
Cds size564
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.0709214-UTR-P-wetherbeei_contig5955:1390..15141683186878.0709214-UTR-P-wetherbeei_contig5955:1390..1514Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5955 1391..1514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.0839639-CDS-P-wetherbeei_contig5955:1514..19571683186878.0839639-CDS-P-wetherbeei_contig5955:1514..1957Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5955 1515..1957 -
1683186878.1002245-CDS-P-wetherbeei_contig5955:2080..22011683186878.1002245-CDS-P-wetherbeei_contig5955:2080..2201Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5955 2081..2201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5955.3.1prot_P-wetherbeei_contig5955.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5955 1515..2201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5955.3.1

>prot_P-wetherbeei_contig5955.3.1 ID=prot_P-wetherbeei_contig5955.3.1|Name=mRNA_P-wetherbeei_contig5955.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
TGADTAKAARDTRAPRRQRQSPNAGGRAKVGRSREEKPHPKAFGHAQDER
LGRQPTRRLLLRVDPLRAAGGRHIVAGPGHGRGAAVHTSGGDAHPAMGWP
AVRRQQRRWQRHRRRWWRWQRPTGMRAAGPQEAAVAAAVRRRGRGTGKVT
QRTWSRQLTRLRPPSIVQSACAGEALSIVVHSHPGVM*
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mRNA from alignment at P-wetherbeei_contig5955:1391..2201-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5955.3.1 ID=mRNA_P-wetherbeei_contig5955.3.1|Name=mRNA_P-wetherbeei_contig5955.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=811bp|location=Sequence derived from alignment at P-wetherbeei_contig5955:1391..2201- (Phaeothamnion wetherbeei SAG_119_79)
ACTGGCGCAGACACAGCAAAAGCAGCGCGAGACACTCGAGCGCCGCGCCG
GCAACGCCAAAGCCCTAATGCAGGAGGCCGAGCGAAGGTTGGTAGAAGCC
GAGAAGAAAAGCCCCACCCAAGTAAGACTGCGCTCGCCCCTCCCGACGTT
ACACCGTCAAAGCACGTAGTAAGCACAGACATACAAAATTTGTGTCTCAC
CGCTTCTCGTTTCTCTTTTTCCTCACACGTTCCTCCCTTTCCAGAGGCCT
TCGGACACGCGCAAGATGAACGCCTTGGTCGTCAGCCTACTCGGCGGCTC
CTTCTCCGCGTGGATCCTCTGCGTGCTGCTGGCGGTCGCCACATCGTCGC
CGGGCCTGGGCATGGCCGCGGGGCTGCCGTGCACACTAGTGGCGGCGATG
CTCATCCAGCGATGGGTTGGCCTGCAGTGCGGCGGCAGCAGCGGCGGTGG
CAGCGGCACCGGCGGCGGTGGTGGCGGTGGCAGCGGCCGACCGGGATGCG
CGCCGCTGGACCGCAGGAGGCCGCGGTCGCCGCCGCAGTCAGGCGGCGCG
GAAGGGGCACCGGCAAGGTGACACAGCGGACATGGTCACGTCAGCTCACG
CGCTTGCGACCGCCTTCGATTGTCCAGTCCGCATGCGCGGGAGAGGCCTT
GTCTATAGTTGTACACAGCCATCCGGGGGTGATGTAGATAGAGAAGCCGA
ACAAACACATCTAAGACCAATCACATCAGAGGGCACCTCGAGAGGAGAAA
AGCTAGGGTACGTGTTGCACGCAATTAGAAGGACAGAGCACGAAAACAAT
TTTGACGTCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5955:1391..2201-

>mRNA_P-wetherbeei_contig5955.3.1 ID=mRNA_P-wetherbeei_contig5955.3.1|Name=mRNA_P-wetherbeei_contig5955.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig5955:1391..2201- (Phaeothamnion wetherbeei SAG_119_79)
ACTGGCGCAGACACAGCAAAAGCAGCGCGAGACACTCGAGCGCCGCGCCG
GCAACGCCAAAGCCCTAATGCAGGAGGCCGAGCGAAGGTTGGTAGAAGCC
GAGAAGAAAAGCCCCACCCAAAGGCCTTCGGACACGCGCAAGATGAACGC
CTTGGTCGTCAGCCTACTCGGCGGCTCCTTCTCCGCGTGGATCCTCTGCG
TGCTGCTGGCGGTCGCCACATCGTCGCCGGGCCTGGGCATGGCCGCGGGG
CTGCCGTGCACACTAGTGGCGGCGATGCTCATCCAGCGATGGGTTGGCCT
GCAGTGCGGCGGCAGCAGCGGCGGTGGCAGCGGCACCGGCGGCGGTGGTG
GCGGTGGCAGCGGCCGACCGGGATGCGCGCCGCTGGACCGCAGGAGGCCG
CGGTCGCCGCCGCAGTCAGGCGGCGCGGAAGGGGCACCGGCAAGGTGACA
CAGCGGACATGGTCACGTCAGCTCACGCGCTTGCGACCGCCTTCGATTGT
CCAGTCCGCATGCGCGGGAGAGGCCTTGTCTATAGTTGTACACAGCCATC
CGGGGGTGATGTAG
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