mRNA_P-wetherbeei_contig595.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig595.1.2
Unique NamemRNA_P-wetherbeei_contig595.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig595.1.2 vs. uniprot
Match: A0A846MWP9_9PROT (Ankyrin repeat protein n=2 Tax=Rhizomicrobium palustre TaxID=189966 RepID=A0A846MWP9_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 2.610e-5
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  484 LGRAP-LHQAALWGHTEVCALLLRHGADVGLKDRPHGQTALHYASENGHPDAIKALV 651
            LG  P LH AA +GH ++ ALLL HGA + LK +  G TALHYA     PDA K L+
Sbjct:  284 LGGVPALHLAAQFGHADMVALLLDHGASIDLKSQARGATALHYAVFPNEPDAAKVLI 340
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BLAST of mRNA_P-wetherbeei_contig595.1.2 vs. uniprot
Match: A0A060YAK9_ONCMY (Uncharacterized protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060YAK9_ONCMY)

HSP 1 Score: 57.4 bits (137), Expect = 3.030e-5
Identity = 73/151 (48.34%), Postives = 93/151 (61.59%), Query Frame = 1 
Query:  466 VNAVDKLGRAPLHQAALWGHTEVCALLLRHGADVGLKDRPHGQTALHYASENGHPDAIKALVTAAITAXXXXXXXXXXXXXXXXXXXXXXXPXXASTMPGGGCGGGASTANYIPPAVAVLT-----GPAGGWTGLDAPDDEGNAPLHLAAF 903
            VNA DK    PLH+AA  G T++CALLL HGAD  +K++  GQ  L  A+     D I+AL+  A+  XXXXXXXXXXXXXXXXXXXXXXX X AST     C   AS+ + +  +++ LT     GPA G TG D  D E    ++++ F
Sbjct:  155 VNATDKWAFTPLHEAAQKGRTQLCALLLAHGADPSMKNQ-EGQAPLDLATA----DDIRALLIDAMPPXXXXXXXXXXXXXXXXXXXXXXXXXPASTP---SCLSAASSIDNLAGSLSELTVAGATGPADGATGSDRKDKETVVDMNISQF 297
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BLAST of mRNA_P-wetherbeei_contig595.1.2 vs. uniprot
Match: UPI0006C97BA1 (tankyrase-1-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C97BA1)

HSP 1 Score: 57.8 bits (138), Expect = 4.260e-5
Identity = 47/170 (27.65%), Postives = 64/170 (37.65%), Query Frame = 1 
Query:  466 VNAVDKLGRAPLHQAALWGHTEVCALLLRHGADVGLKDRPHGQTALHYASENGHPDAIKALVTAAITAXXXXXXXXXXXXXXXXXXXXXXXPXXASTMPGGGCGGGASTANYIPPAVAVLTGPAGGWTGLDAPDDEGNAPLHLAAFNGRRNAVEVLLASGADPWPENRKG 975
            V+A+DKLG APLH A  +G+ +V   LL +GAD  L + P GQT LH   +        A   +   A                                                             +DA D  GN PLH+A   GR++  +VLL +GA+P   NR+G
Sbjct:  342 VDALDKLGNAPLHLALRYGNKKVAIFLLLNGADPNLTN-PEGQTPLHIICQENAFQQEYAFAWSFFKACRDKDRRVR----------------------------------------------------VDALDKSGNTPLHVALSRGRKDLAQVLLTNGANPNLANRRG 458
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig595.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A846MWP9_9PROT2.610e-552.63Ankyrin repeat protein n=2 Tax=Rhizomicrobium palu... [more]
A0A060YAK9_ONCMY3.030e-548.34Uncharacterized protein n=1 Tax=Oncorhynchus mykis... [more]
UPI0006C97BA14.260e-527.65tankyrase-1-like n=1 Tax=Trichogramma pretiosum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig595contigP-wetherbeei_contig595:235..2406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10116.ENSRNOP00000062801
Preferred nameANKMY2
PFAMsAnk_2,Ank_4,Ank_5,zf-MYND
Model size1584
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005929,GO:0006950,GO:0006970,GO:0007275,GO:0007610,GO:0007635,GO:0008104,GO:0008150,GO:0008270,GO:0008589,GO:0009266,GO:0009628,GO:0009791,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010752,GO:0010753,GO:0016043,GO:0019899,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030033,GO:0032101,GO:0032501,GO:0032502,GO:0032528,GO:0033036,GO:0033365,GO:0034613,GO:0040012,GO:0040024,GO:0042221,GO:0042995,GO:0043054,GO:0043167,GO:0043169,GO:0043226,GO:0044085,GO:0044464,GO:0046662,GO:0046872,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048580,GO:0048581,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0050920,GO:0051093,GO:0051179,GO:0051239,GO:0051241,GO:0051641,GO:0061062,GO:0061064,GO:0061065,GO:0061067,GO:0061512,GO:0065007,GO:0070727,GO:0071840,GO:0071981,GO:0072657,GO:0097499,GO:0097500,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:1902531,GO:1902533,GO:1903441,GO:1904106,GO:1904107,GO:1990778,GO:2000026,GO:2000241
Exons3
Evalue8.17e-07
EggNOG OGsCOG0666@1|root,KOG1710@2759|Eukaryota,39V6E@33154|Opisthokonta,3BAJ7@33208|Metazoa,3CVZK@33213|Bilateria,48435@7711|Chordata,4930T@7742|Vertebrata,3J4PG@40674|Mammalia,35CVK@314146|Euarchontoglires,4PXAX@9989|Rodentia
DescriptionMYND finger
Cds size1584
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.6585927-CDS-P-wetherbeei_contig595:234..4501683186877.6585927-CDS-P-wetherbeei_contig595:234..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig595 235..450 +
1683186877.6680195-CDS-P-wetherbeei_contig595:787..11021683186877.6680195-CDS-P-wetherbeei_contig595:787..1102Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig595 788..1102 +
1683186877.6761777-CDS-P-wetherbeei_contig595:1353..24061683186877.6761777-CDS-P-wetherbeei_contig595:1353..2406Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig595 1354..2406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig595.1.2prot_P-wetherbeei_contig595.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig595 235..2406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig595.1.2

>prot_P-wetherbeei_contig595.1.2 ID=prot_P-wetherbeei_contig595.1.2|Name=mRNA_P-wetherbeei_contig595.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=528bp
QTACVEVLLVFGADPTAENEADLMPGLEVGFDRAVPQGLRNEVVAVVAAG
RKKRAALGAAGAEKLAEAQIFGYAKRGELAAVRRYLAAGGNSCAADDDHF
TALHHAAASGHLAVCEALLTNRLSSSSSSSAAAAAAAANIGLAKAAATAA
TKPANVNAVDKLGRAPLHQAALWGHTEVCALLLRHGADVGLKDRPHGQTA
LHYASENGHPDAIKALVTAAITAAATAATAAPAAAATAVTAVAAAAPPAA
STMPGGGCGGGASTANYIPPAVAVLTGPAGGWTGLDAPDDEGNAPLHLAA
FNGRRNAVEVLLASGADPWPENRKGEPPGGAFGTSVQAAQRRGVLFELEA
ARKRRPTSRGRPIAAALKSQPGLKGKQCGGANSPGSPGSCCSGGGGGGCG
SPGSPGSCCSGCAGGKNIDDEGIDRSYQEEPGRSSLRRRRGFGSPGSRGS
RSRSRSLSLMSIRLSVKRGHAKGTATRGSGALQSVSSGGGGGGGGGGGGG
GSDGGSSNPGPTPPGSTDGRDGGGGNGP
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mRNA from alignment at P-wetherbeei_contig595:235..2406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig595.1.2 ID=mRNA_P-wetherbeei_contig595.1.2|Name=mRNA_P-wetherbeei_contig595.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2172bp|location=Sequence derived from alignment at P-wetherbeei_contig595:235..2406+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGCGTGCGTTGAGGTGCTGCTGGTGTTCGGTGCCGACCCGACGGC
GGAGAACGAGGCGGACCTCATGCCCGGGCTCGAGGTCGGTTTCGACCGCG
CCGTGCCGCAGGGGCTACGCAACGAGGTCGTCGCCGTCGTCGCCGCCGGC
AGGAAGAAGCGGGCGGCGCTCGGAGCCGCCGGCGCGGAGAAGCTGGCCGA
GGCACAGATCTTCGGGGTGAGTGCGGGTAAGCGCGCCAATTGAAGAGGAC
GAATTGCTGCTTGTTTACGCAGGCCGCCTGCTTCTCCTGCCAATGCGGTA
TCCCGGTAGATCGAGAACTCCGTTTGATTCGTTCACAGCACTGCATCTTT
TTTCAAAGCGAACGCGGCATAGTGAAGGGAAGGCAGTGGCTTTCCGTTCG
TACCCTTCAGTTGAGCCGGCTTGCCGAAAGGCCAGGTCTGGGGGAAAAGG
GTATGAATAATACGGAAGAAAGGGAAAGCTATATTCCGAGAACTGACTTG
TTAACTCACAAACCGGTGGCTCCTTTCTCCCTCCAACACCGAGTGCATTG
CAGTATGCCAAGCGGGGAGAGCTGGCCGCCGTTCGCCGCTACCTCGCGGC
GGGCGGCAACAGCTGCGCCGCCGACGACGACCACTTCACGGCGCTCCACC
ACGCCGCCGCCTCGGGACACCTCGCCGTCTGTGAGGCCCTCTTGACCAAT
AGATTGTCGTCTTCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGCGGC
GAACATCGGGTTAGCGAAGGCGGCGGCGACGGCGGCTACCAAGCCGGCGA
ATGTCAACGCCGTGGACAAACTGGGGCGGGCGCCGCTGCATCAGGCCGCT
CTCTGGGGCCACACCGAGGTAAACTTTGGCATGAGACTTCGCGTCAGTAA
CTCGGTTATGTGAAGTGGCCGACCCGGGCACGGCAAACAGGTCCCAGCCA
GCAATTCGAAGAATATTTTCGTGTGTCTTACGCTTGCACGCCGCTCAGCA
TTGCAGCAATCCGGCTCCGTACGTCTGTCCCCCTTTTATTTCTTCTGCGC
TGCTCTCTCCTCATTCACTCTCTCCTTTATTGTCATTTCGCCGTATGCCT
TGACGCGGACGGAAAGCAGGTCTGCGCGTTGCTGCTGCGGCACGGGGCCG
ACGTTGGCTTGAAGGACCGCCCGCACGGGCAAACGGCGCTGCACTACGCC
AGCGAGAACGGCCACCCCGACGCAATCAAAGCGCTCGTCACGGCTGCCAT
CACAGCCGCCGCCACCGCCGCCACCGCCGCCCCCGCTGCCGCCGCCACCG
CCGTCACTGCCGTCGCTGCAGCTGCACCGCCGGCGGCATCAACAATGCCC
GGCGGTGGCTGTGGCGGCGGCGCCTCCACAGCTAATTACATCCCCCCAGC
GGTAGCGGTCTTGACTGGGCCGGCAGGCGGGTGGACCGGACTGGACGCGC
CGGACGACGAAGGCAACGCCCCGCTACACCTCGCGGCCTTCAACGGGCGT
CGGAACGCCGTGGAAGTCCTGCTGGCATCCGGCGCGGATCCGTGGCCCGA
AAATCGCAAAGGGGAGCCCCCGGGCGGTGCCTTCGGCACGAGCGTACAGG
CGGCGCAGCGGCGCGGCGTACTCTTCGAGCTGGAGGCCGCGCGGAAGCGG
CGGCCGACGTCCCGCGGGAGGCCGATCGCTGCCGCGCTCAAGTCGCAGCC
GGGCCTCAAGGGTAAGCAGTGCGGCGGCGCCAACAGCCCGGGGAGTCCCG
GCAGTTGCTGCAGCGGCGGCGGCGGCGGCGGCTGCGGCAGCCCCGGCAGC
CCTGGCAGCTGCTGCAGCGGCTGCGCCGGCGGAAAGAACATTGACGACGA
AGGCATCGACCGGAGTTACCAGGAAGAGCCGGGGCGGTCGTCGCTCCGGC
GCCGTCGGGGCTTCGGCAGCCCCGGTAGCCGCGGCAGCCGGAGTCGCAGC
CGCAGCCTCAGCCTGATGAGCATTCGCCTGAGCGTGAAGCGGGGCCATGC
CAAGGGCACGGCCACACGAGGCAGCGGTGCGCTTCAAAGCGTCAGCAGTG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGACGGC
GGCAGCTCGAACCCGGGGCCGACGCCGCCGGGCTCGACGGACGGCAGGGA
CGGAGGCGGCGGCAACGGGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig595:235..2406+

>mRNA_P-wetherbeei_contig595.1.2 ID=mRNA_P-wetherbeei_contig595.1.2|Name=mRNA_P-wetherbeei_contig595.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1584bp|location=Sequence derived from alignment at P-wetherbeei_contig595:235..2406+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGCGTGCGTTGAGGTGCTGCTGGTGTTCGGTGCCGACCCGACGGC
GGAGAACGAGGCGGACCTCATGCCCGGGCTCGAGGTCGGTTTCGACCGCG
CCGTGCCGCAGGGGCTACGCAACGAGGTCGTCGCCGTCGTCGCCGCCGGC
AGGAAGAAGCGGGCGGCGCTCGGAGCCGCCGGCGCGGAGAAGCTGGCCGA
GGCACAGATCTTCGGGTATGCCAAGCGGGGAGAGCTGGCCGCCGTTCGCC
GCTACCTCGCGGCGGGCGGCAACAGCTGCGCCGCCGACGACGACCACTTC
ACGGCGCTCCACCACGCCGCCGCCTCGGGACACCTCGCCGTCTGTGAGGC
CCTCTTGACCAATAGATTGTCGTCTTCGTCGTCGTCGTCGGCGGCGGCGG
CGGCGGCGGCGGCGAACATCGGGTTAGCGAAGGCGGCGGCGACGGCGGCT
ACCAAGCCGGCGAATGTCAACGCCGTGGACAAACTGGGGCGGGCGCCGCT
GCATCAGGCCGCTCTCTGGGGCCACACCGAGGTCTGCGCGTTGCTGCTGC
GGCACGGGGCCGACGTTGGCTTGAAGGACCGCCCGCACGGGCAAACGGCG
CTGCACTACGCCAGCGAGAACGGCCACCCCGACGCAATCAAAGCGCTCGT
CACGGCTGCCATCACAGCCGCCGCCACCGCCGCCACCGCCGCCCCCGCTG
CCGCCGCCACCGCCGTCACTGCCGTCGCTGCAGCTGCACCGCCGGCGGCA
TCAACAATGCCCGGCGGTGGCTGTGGCGGCGGCGCCTCCACAGCTAATTA
CATCCCCCCAGCGGTAGCGGTCTTGACTGGGCCGGCAGGCGGGTGGACCG
GACTGGACGCGCCGGACGACGAAGGCAACGCCCCGCTACACCTCGCGGCC
TTCAACGGGCGTCGGAACGCCGTGGAAGTCCTGCTGGCATCCGGCGCGGA
TCCGTGGCCCGAAAATCGCAAAGGGGAGCCCCCGGGCGGTGCCTTCGGCA
CGAGCGTACAGGCGGCGCAGCGGCGCGGCGTACTCTTCGAGCTGGAGGCC
GCGCGGAAGCGGCGGCCGACGTCCCGCGGGAGGCCGATCGCTGCCGCGCT
CAAGTCGCAGCCGGGCCTCAAGGGTAAGCAGTGCGGCGGCGCCAACAGCC
CGGGGAGTCCCGGCAGTTGCTGCAGCGGCGGCGGCGGCGGCGGCTGCGGC
AGCCCCGGCAGCCCTGGCAGCTGCTGCAGCGGCTGCGCCGGCGGAAAGAA
CATTGACGACGAAGGCATCGACCGGAGTTACCAGGAAGAGCCGGGGCGGT
CGTCGCTCCGGCGCCGTCGGGGCTTCGGCAGCCCCGGTAGCCGCGGCAGC
CGGAGTCGCAGCCGCAGCCTCAGCCTGATGAGCATTCGCCTGAGCGTGAA
GCGGGGCCATGCCAAGGGCACGGCCACACGAGGCAGCGGTGCGCTTCAAA
GCGTCAGCAGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGCGACGGCGGCAGCTCGAACCCGGGGCCGACGCCGCCGGGCTCGAC
GGACGGCAGGGACGGAGGCGGCGGCAACGGGCCG
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