mRNA_P-wetherbeei_contig5947.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5947.2.1
Unique NamemRNA_P-wetherbeei_contig5947.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5947.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5947contigP-wetherbeei_contig5947:2368..3519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size984
Hectar predicted targeting categoryother localisation
Exons2
Cds size981
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.5813704-CDS-P-wetherbeei_contig5947:2369..31901683186877.5813704-CDS-P-wetherbeei_contig5947:2369..3190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5947 2370..3190 -
1683186877.5915363-CDS-P-wetherbeei_contig5947:3359..35191683186877.5915363-CDS-P-wetherbeei_contig5947:3359..3519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5947 3360..3519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5947.2.1prot_P-wetherbeei_contig5947.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5947 2370..3519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5947.2.1

>prot_P-wetherbeei_contig5947.2.1 ID=prot_P-wetherbeei_contig5947.2.1|Name=mRNA_P-wetherbeei_contig5947.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
EERQLDREPKSRHWLRKVSLGSRNRAVKGAWSAREAPLLLDFCDGQYCWI
DLFGSAVVPAIYLRGLDVLQATCGGIMSFIKSPSGRSGPQHRHGRGGQQD
AARRGSSVGEESGDDRRGGFGAAGGSGSSGSSLLAAIGGADGTRHSGSDG
CRGAGSVGSTGNGNGGGKSDGILASLRCAVAAAVAVARRCGGGSGGEGEI
LKWTCLLLLACAGWVYVLTSTFGGGGGGGPPPLGAASGGPPPLGAASGGT
IVSSGLPQVLRRGGIGSGGGGDGADDGSARKTAPPALGDDAEPAFPREVM
FAAPPHAPRRTVEIPPLDPGRTAAVAV
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mRNA from alignment at P-wetherbeei_contig5947:2368..3519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5947.2.1 ID=mRNA_P-wetherbeei_contig5947.2.1|Name=mRNA_P-wetherbeei_contig5947.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1152bp|location=Sequence derived from alignment at P-wetherbeei_contig5947:2368..3519- (Phaeothamnion wetherbeei SAG_119_79)
GAAGAACGACAACTCGACAGGGAGCCCAAGTCCAGGCACTGGTTGCGCAA
AGTTAGTCTTGGCTCGAGAAATCGAGCAGTGAAAGGGGCTTGGAGCGCCA
GGGAAGCTCCGCTGCTCCTCGATTTCTGCGATGGGCAATATTGTTGGATA
GACTTATTTGGTGCGTTCCCCTATCGACTTGTCTTTGCTTTCCTACCACA
TAACGCCCCTGCTTTCCCATTGCTGTAAAATTTCCGCCACTCCCTACTTG
TGTTCATCCATTTTCGAAGGTCGTTGTCCATTTCCTACTACAATATCCTT
TCGTCTCTTTCCCCTTGCACGGAACGCAGGTAGCGCTGTGGTACCGGCCA
TTTACCTTCGTGGACTTGATGTCTTGCAGGCCACTTGCGGCGGCATTATG
TCCTTTATAAAGTCCCCGTCTGGACGGAGCGGACCGCAGCATAGACACGG
CCGCGGCGGGCAGCAGGACGCTGCCCGCCGCGGCTCGTCGGTCGGAGAAG
AAAGCGGCGATGACCGCCGAGGCGGCTTTGGCGCAGCAGGTGGCAGCGGC
AGCAGCGGGAGCAGCTTGCTGGCGGCAATCGGAGGGGCCGATGGCACGCG
ACATTCCGGCTCTGACGGCTGCCGTGGAGCCGGCAGTGTCGGCAGCACTG
GCAACGGAAACGGCGGTGGCAAAAGCGACGGCATTTTGGCGTCATTGAGG
TGCGCCGTCGCTGCGGCCGTCGCTGTCGCTCGTCGGTGCGGCGGCGGCAG
CGGGGGCGAGGGCGAGATCCTCAAATGGACGTGCTTGCTGCTGCTCGCGT
GCGCCGGCTGGGTATACGTGCTAACGTCCACTTTTGGCGGCGGCGGCGGC
GGCGGGCCCCCTCCCCTTGGAGCGGCCAGCGGCGGGCCCCCTCCCCTTGG
AGCGGCCAGCGGCGGCACCATCGTGTCTTCCGGGCTTCCGCAGGTGCTGC
GACGTGGCGGCATTGGCAGCGGCGGCGGCGGCGACGGCGCTGATGATGGC
AGCGCGCGCAAAACGGCGCCGCCGGCGCTCGGCGACGACGCCGAGCCCGC
CTTTCCACGAGAAGTGATGTTCGCGGCGCCGCCGCACGCCCCCCGGCGCA
CCGTCGAGATCCCGCCGTTAGACCCCGGGCGAACGGCGGCAGTAGCGGTG
GC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5947:2368..3519-

>mRNA_P-wetherbeei_contig5947.2.1 ID=mRNA_P-wetherbeei_contig5947.2.1|Name=mRNA_P-wetherbeei_contig5947.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig5947:2368..3519- (Phaeothamnion wetherbeei SAG_119_79)
GAAGAACGACAACTCGACAGGGAGCCCAAGTCCAGGCACTGGTTGCGCAA
AGTTAGTCTTGGCTCGAGAAATCGAGCAGTGAAAGGGGCTTGGAGCGCCA
GGGAAGCTCCGCTGCTCCTCGATTTCTGCGATGGGCAATATTGTTGGATA
GACTTATTTGGTAGCGCTGTGGTACCGGCCATTTACCTTCGTGGACTTGA
TGTCTTGCAGGCCACTTGCGGCGGCATTATGTCCTTTATAAAGTCCCCGT
CTGGACGGAGCGGACCGCAGCATAGACACGGCCGCGGCGGGCAGCAGGAC
GCTGCCCGCCGCGGCTCGTCGGTCGGAGAAGAAAGCGGCGATGACCGCCG
AGGCGGCTTTGGCGCAGCAGGTGGCAGCGGCAGCAGCGGGAGCAGCTTGC
TGGCGGCAATCGGAGGGGCCGATGGCACGCGACATTCCGGCTCTGACGGC
TGCCGTGGAGCCGGCAGTGTCGGCAGCACTGGCAACGGAAACGGCGGTGG
CAAAAGCGACGGCATTTTGGCGTCATTGAGGTGCGCCGTCGCTGCGGCCG
TCGCTGTCGCTCGTCGGTGCGGCGGCGGCAGCGGGGGCGAGGGCGAGATC
CTCAAATGGACGTGCTTGCTGCTGCTCGCGTGCGCCGGCTGGGTATACGT
GCTAACGTCCACTTTTGGCGGCGGCGGCGGCGGCGGGCCCCCTCCCCTTG
GAGCGGCCAGCGGCGGGCCCCCTCCCCTTGGAGCGGCCAGCGGCGGCACC
ATCGTGTCTTCCGGGCTTCCGCAGGTGCTGCGACGTGGCGGCATTGGCAG
CGGCGGCGGCGGCGACGGCGCTGATGATGGCAGCGCGCGCAAAACGGCGC
CGCCGGCGCTCGGCGACGACGCCGAGCCCGCCTTTCCACGAGAAGTGATG
TTCGCGGCGCCGCCGCACGCCCCCCGGCGCACCGTCGAGATCCCGCCGTT
AGACCCCGGGCGAACGGCGGCAGTAGCGGTG
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