mRNA_P-wetherbeei_contig5946.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI000719C19E (MMS19 nucleotide excision repair protein homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C19E) HSP 1 Score: 82.0 bits (201), Expect = 7.670e-15 Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 552
+++QR F+ P L A A L+A+ ++ + +P V+ SE P ++ + +L GD+D L L L AL D ++ H T+VP LL LTRR + + RI AL LR ++ LP+ + PH+ V R L+AALDD++R+VRQAAA+ R +W +L S
Sbjct: 693 MYRQRFFLETSPLLVAAFHLA--PKDMKPHYLVALSIMLRYIPHQVMLSEFPPLLPLLLESLVCGDAD--------LQLSTLAALSALLT--DTPQLLIGHADTIVPLLLTLTRRED--SMKLRISALDCLRIVSSLPHQVVFPHQQQVIRQLSAALDDKKRLVRQAAAKTRGEWCILGS 858
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A8B7XLB4_ACAPL (MMS19 nucleotide excision repair protein n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XLB4_ACAPL) HSP 1 Score: 76.6 bits (187), Expect = 5.790e-13 Identity = 63/180 (35.00%), Postives = 95/180 (52.78%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 552
+++QRLF+ P + + L+++ L VPR VL SELP +M V++L DS L LE L L + D I+S +V +L+P LL L+ A + R+ AL+ + EL L + ++ PH+ VARGL LDD++RVVR+ A +ARN W++L S
Sbjct: 864 MYRQRLFLQLLPGIIEGHCKTAQGTKKNY--LLSLSHLLHFVPRQVLLSELPPLMPLLVQSLHQEDS--------ALYESVLERLALLTH--DAPGIISQYVDSLLPDLLRLSGCE--ASMKVRVGALKCIGELTTLEHHKVFPHKLKVARGLIPRLDDKKRVVRKEAVKARNLWMMLGS 1029
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A210R1X6_MIZYE (MMS19 nucleotide excision repair protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R1X6_MIZYE) HSP 1 Score: 72.4 bits (176), Expect = 1.680e-11 Identity = 58/179 (32.40%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCN-GDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 546
+++QR+FV RL + ++ L+ + + K +P+ VL SELP + V +L D D L T+ LC+ D ++S HV TLVP+LL+L P+ + RI AL+ + L LP L P++ V R L LDDR+R+VR+ A AR++W ++
Sbjct: 845 MYKQRIFVENVGRLKEGFASS--PPATKKNYLICLSHMLKILPKQVLLSELPPLFPLMVHSLLCDDLD-----------LQLSTMTILCDLTHDAPDVISKHVDTLVPQLLQLC--THPSSMKIRIKALRCISALCVLPVHLLLPYKTRVVRSLEPVLDDRKRLVRREAVTARSEWCLI 1008
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: L8GZ09_ACACA (MMS19 nucleotide excision repair protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZ09_ACACA) HSP 1 Score: 72.4 bits (176), Expect = 1.710e-11 Identity = 65/182 (35.71%), Postives = 89/182 (48.90%), Query Frame = 1
Query: 1 RASPLWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTR-RVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLV 543
R L++QR F P L A L+A+ L K +P+SVL SEL TVM V+++ + D L L+TL L + +VS HV VP LL LT R + A RI AL L LP+ ++ P++ +A L+AALDD +R VR+AA + RN WL
Sbjct: 920 RIRVLYKQRFFSELLPTLLRGFHEA--SAPSKPAHLLAISYLLKHIPKSVLLSELHTVMPLIVQSINADDEG--------LIASTLQTLSMLIK--EAPNMVSEHVSAFVPALLRLTTFRPKMA---IRIAALDCLSSFITLPFYKIFPYQKKIANELSAALDDPKRAVRKAAVKCRNQWLT 1086
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A401SRL4_CHIPU (MMS19 nucleotide excision repair protein n=4 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SRL4_CHIPU) HSP 1 Score: 70.5 bits (171), Expect = 7.790e-11 Identity = 61/180 (33.89%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 552
+++QR F P+L +A ++ +L S+P+ VL +ELP+++T + AL D + L L L D +S HV TLV KLL LT PA + RI +LQ + L +LP + PH+P V + LA LDD++R+VR+ A RAR +W +L S
Sbjct: 865 MYRQRFFTENVPKLVQGFHSASEDNKSNYLKALSHVL--NSLPKQVLMTELPSLLTLLLEALSCSDQ--------VVQLSTLGCLHPLLL--DATQTMSLHVDTLVNKLLNLTS--SPAM-KVRIASLQCMHALTKLPPHVILPHKPRVIQALAKPLDDKKRLVRKEAVRARGEWFLLGS 1029
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI00148A9C21 (MMS19 nucleotide excision repair protein homolog n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A9C21) HSP 1 Score: 70.1 bits (170), Expect = 1.050e-10 Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCN--GDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 546
L++QR F RLT+ A L+A+ +S+P+SVL ELP + V++L + + T+ ALC D D +V HV +++P+LL+LT +PA R R AL+ L EL LP P + P++P V R L LDD++R+VR A +ARN+W +L
Sbjct: 832 LYKQRFFTENSSRLTEGFQNASAGTKKNY--LIALSHCLQSLPKSVLVRELPQLFPLLVQSLLCDN-----------VQLQQSTMDALCTMITDAPDFLVK-HVDSVIPQLLKLTT-YKPAM-RVRTSALRCLLELVSLPAPVILPYKPQVVRSLEGVLDDKKRLVRLEAVKARNEWCLL 995
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI001B7DF3F4 (MMS19 nucleotide excision repair protein homolog n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DF3F4) HSP 1 Score: 69.3 bits (168), Expect = 1.950e-10 Identity = 60/180 (33.33%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVLRS 552
+++QR F P+L +A ++ +L S+P+ VL +ELP+++T + A+ D + L L L D I+S HV TLV KLL LT PA + RI +LQ + L +LP + PH+ V + LA LDD++R+VR+ A RAR +W +L S
Sbjct: 865 MYRQRFFTENVPKLVQGFHSASEDNKSNYLKALSHVL--NSLPKQVLMTELPSLLTLLLEAMSCSDQ--------VVQLSTLGCLHPLLL--DAPQIMSLHVETLVNKLLNLT--TSPAM-KVRIASLQCMHALTKLPSHVILPHKSRVIQALAKPLDDKKRLVRKEAVRARGEWFLLGS 1029
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A8B8ENX3_CRAVI (MMS19 nucleotide excision repair protein n=5 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ENX3_CRAVI) HSP 1 Score: 68.9 bits (167), Expect = 2.640e-10 Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 1
Query: 13 LWQQRLFV-TAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 546
L++QR F + P + TA++ LMA+ +S+P+SVL ELP + V++L + L + +ETL + D ++ H+ T++P+LL+LT +P R R AL+ L L LP P + P+RP V + L LDD++R+VR A +ARN+W +L
Sbjct: 831 LYKQRFFTENSSPIIEGFQTASISTKKNY---LMALSHCLQSLPQSVLLRELPQLFPLLVQSLLCDNIQ--------LQQSTMETLCTMIT--DAPDVIVKHIDTVIPQLLKLTA-YKPVM-RVRTCALRCLLGLVSLPTPVILPYRPRVIKALEGVLDDKKRLVRLEAVKARNEWCLL 994
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: UPI001C4C49D7 (LOW QUALITY PROTEIN: MMS19 nucleotide excision repair protein homolog n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4C49D7) HSP 1 Score: 68.6 bits (166), Expect = 3.590e-10 Identity = 58/178 (32.58%), Postives = 88/178 (49.44%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 546
+++QR F P+L AA ++ +L +P++VL +ELP++++ + AL D + L L L D I+S H+ TLV K L LT + RI ALQ L LA LP P + P++P V + LA LDD++R+VR+ A AR +W +L
Sbjct: 856 MFRQRFFTECVPQLVQRFHAAAPGMKSNYLKALSHIL--NHLPKTVLVTELPSLLSLLLEALSCPDH--------VVQLSTLHCLQPLLL--DAPHIMSLHIDTLVGKFLNLT---DSPAMAIRIAALQCLHALASLPTPVVIPYKPRVIKALAKPLDDKKRLVRKEAVTARGEWFLL 1018
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Match: A0A812D4Y3_SEPPH (MMS19 nucleotide excision repair protein n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D4Y3_SEPPH) HSP 1 Score: 67.8 bits (164), Expect = 6.600e-10 Identity = 59/178 (33.15%), Postives = 93/178 (52.25%), Query Frame = 1
Query: 13 LWQQRLFVTAFPRLTDAATAALXXXXXXXXPLMAMLLLAKSVPRSVLESELPTVMTAAVRALGSGDSDGGGGGSAPLARCALETLLALCNGDDIDAIVSPHVPTLVPKLLELTRRVEPAGPRTRIYALQVLRELARLPYPRLHPHRPAVARGLAAALDDRRRVVRQAAARARNDWLVL 546
+++QR FV RL+++ A L+A+ L +PR VL SELP ++ V AL S + L + TL + D+ A+++ HV +VP+LL+L++ + RI +L+ L L +LP L P+R V R L LDD++R+VR+ A RAR +W +L
Sbjct: 840 MYRQRFFVEHIQRLSESFHHAKPELKKNY--LIAVSHLLTFLPRQVLVSELPPLIPMLVLALMSDECK--------LQLSTMSTLKTVM--DESPALLAQHVNLIVPRLLKLSKT--DTSMKVRIASLECLEYLTQLPASTLLPYRREVIRFLEPVLDDKKRLVRRQAVRARGEWYLL 1003 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5946.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5946.1.1 >prot_P-wetherbeei_contig5946.1.1 ID=prot_P-wetherbeei_contig5946.1.1|Name=mRNA_P-wetherbeei_contig5946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp RASPLWQQRLFVTAFPRLTDAATAALAATAATVAPLMAMLLLAKSVPRSVback to top mRNA from alignment at P-wetherbeei_contig5946:668..1575+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5946.1.1 ID=mRNA_P-wetherbeei_contig5946.1.1|Name=mRNA_P-wetherbeei_contig5946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=908bp|location=Sequence derived from alignment at P-wetherbeei_contig5946:668..1575+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5946:668..1575+ >mRNA_P-wetherbeei_contig5946.1.1 ID=mRNA_P-wetherbeei_contig5946.1.1|Name=mRNA_P-wetherbeei_contig5946.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig5946:668..1575+ (Phaeothamnion wetherbeei SAG_119_79)back to top |