mRNA_P-wetherbeei_contig5940.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5940.1.1
Unique NamemRNA_P-wetherbeei_contig5940.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5940.1.1 vs. uniprot
Match: A0A7S4E0R0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E0R0_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 1.550e-12
Identity = 47/149 (31.54%), Postives = 70/149 (46.98%), Query Frame = 1 
Query:  157 VDPHSHDGYKCAICHAELVNAYLHCSGCEVLLRRDFNVCLRCHTAGAKNFTATVAAANAGGSIMVVPWSNAWVPNFTNFKHLTFETAHTREQRREAIRYELHNKS-EKCPCSQRKCAVCKLCSSCACDCHAAFQPRYRFQNGCGMRALA 600
            VDP+  +G++C IC  EL N Y+HC GCE +LRRD+N+C  CH              N G                  F+    +++H         R ++  ++  KC C Q +C  C+ C  C+C CH  FQ R+RF +   ++ LA
Sbjct:   84 VDPNGVEGFECKICKTELYNMYMHCIGCERILRRDWNICYDCHK-------------NQG------------------FRRNDAKSSH------HGHRGDVDPQAASKCRCRQFQCTYCRGCVRCSCRCHTDFQQRFRFLSPSQLKQLA 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4E0R0_9EUKA1.550e-1231.54Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5940contigP-wetherbeei_contig5940:273..1718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps24852
Model size1447
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.27e-09
EggNOG OGs2926Q@1|root,2R934@2759|Eukaryota,2XEHI@2836|Bacillariophyta
Cds size1446
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.0418038-CDS-P-wetherbeei_contig5940:272..17181683186877.0418038-CDS-P-wetherbeei_contig5940:272..1718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5940 273..1718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5940.1.1prot_P-wetherbeei_contig5940.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5940 273..1718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5940.1.1

>prot_P-wetherbeei_contig5940.1.1 ID=prot_P-wetherbeei_contig5940.1.1|Name=mRNA_P-wetherbeei_contig5940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=482bp
MGPAADGGQALVAATQGRVATAAAAAAAAAAAAAAARSPSLGIVDADQAN
SPVDPHSHDGYKCAICHAELVNAYLHCSGCEVLLRRDFNVCLRCHTAGAK
NFTATVAAANAGGSIMVVPWSNAWVPNFTNFKHLTFETAHTREQRREAIR
YELHNKSEKCPCSQRKCAVCKLCSSCACDCHAAFQPRYRFQNGCGMRALA
MRATAAAAAAAVAAEGLAGSAAAAAAMAAADKAAANLATEPDVGYLVPAA
AAANGIAAWVASQGAAAEGKNSGHRSSRGGGGGGGDSGKGRGRGGGGNGR
NSTARGRGRGRGGAGRGDALDGVEPATDGAVAAAVPAARRRGRPPMMRPV
EEIPAVAKATSAEAVAKAAAAEDATAVEVAAATAATGSNRPASGDGAAPR
DDGSGTPRDCLRRANSGTGAQSANGGKEATALPSAATDRPRRNASKRAEA
VAGGEGSSDESDGDVIADRRNRATKKHSRDET
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mRNA from alignment at P-wetherbeei_contig5940:273..1718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5940.1.1 ID=mRNA_P-wetherbeei_contig5940.1.1|Name=mRNA_P-wetherbeei_contig5940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1446bp|location=Sequence derived from alignment at P-wetherbeei_contig5940:273..1718- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCCAGCAGCGGATGGCGGCCAGGCCTTGGTTGCGGCGACACAAGG
GCGGGTGGCGACGGCGGCCGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGG
CGGCGGCGCGGTCGCCGTCGTTGGGCATCGTAGACGCGGACCAGGCCAAC
AGCCCGGTCGACCCGCACTCGCATGATGGCTACAAATGTGCCATCTGTCA
CGCGGAGCTCGTCAACGCCTACCTGCACTGCTCCGGTTGCGAGGTGCTGC
TGCGACGGGATTTCAACGTCTGCCTGCGCTGCCACACTGCCGGCGCCAAG
AACTTCACCGCCACCGTGGCCGCCGCCAACGCCGGCGGAAGCATCATGGT
GGTGCCGTGGAGCAATGCGTGGGTGCCGAACTTTACGAACTTCAAGCACC
TGACGTTCGAGACGGCACACACGCGGGAGCAGCGGCGGGAGGCGATCCGG
TACGAGCTCCACAATAAGTCGGAGAAGTGCCCGTGCTCCCAGCGGAAGTG
CGCAGTATGCAAGCTGTGCTCGAGCTGCGCCTGCGACTGCCATGCCGCCT
TCCAGCCCCGCTACCGTTTTCAGAACGGTTGCGGGATGCGGGCCCTAGCC
ATGCGGGCCACCGCCGCCGCCGCGGCAGCGGCGGTGGCAGCGGAGGGCCT
CGCGGGGAGCGCGGCAGCCGCCGCGGCCATGGCGGCCGCAGACAAGGCGG
CGGCCAACCTGGCTACCGAGCCTGACGTTGGATACTTGGTACCGGCAGCG
GCGGCGGCGAATGGCATCGCAGCATGGGTTGCGAGTCAGGGTGCGGCAGC
GGAGGGAAAAAACAGCGGGCACCGCAGCAGCAGGGGTGGCGGTGGCGGCG
GTGGGGACAGCGGCAAGGGGCGCGGTCGTGGCGGCGGAGGTAACGGCCGC
AACAGCACCGCGCGCGGCCGAGGGCGCGGGCGCGGCGGCGCTGGCCGAGG
CGACGCACTCGACGGCGTAGAACCTGCTACGGACGGCGCTGTGGCGGCAG
CGGTGCCAGCTGCCCGCCGCCGGGGTCGCCCGCCAATGATGCGACCTGTT
GAGGAAATTCCTGCCGTCGCGAAAGCCACCTCTGCGGAAGCCGTTGCCAA
AGCCGCTGCCGCCGAAGATGCCACCGCTGTCGAAGTTGCTGCTGCCACAG
CCGCCACTGGTAGCAACCGGCCAGCAAGTGGCGACGGCGCTGCGCCCAGA
GACGACGGCTCCGGGACGCCTCGCGATTGTCTTCGCAGAGCGAATAGCGG
CACGGGAGCGCAAAGCGCGAACGGCGGCAAAGAAGCCACGGCCCTTCCGA
GCGCTGCCACTGACCGCCCAAGGCGAAATGCGAGCAAGCGCGCAGAGGCT
GTGGCAGGCGGCGAGGGCAGCAGTGACGAAAGCGACGGCGACGTGATCGC
TGATCGCCGGAATAGAGCTACCAAGAAGCACTCCCGTGACGAGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5940:273..1718-

>mRNA_P-wetherbeei_contig5940.1.1 ID=mRNA_P-wetherbeei_contig5940.1.1|Name=mRNA_P-wetherbeei_contig5940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1446bp|location=Sequence derived from alignment at P-wetherbeei_contig5940:273..1718- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCCAGCAGCGGATGGCGGCCAGGCCTTGGTTGCGGCGACACAAGG
GCGGGTGGCGACGGCGGCCGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGG
CGGCGGCGCGGTCGCCGTCGTTGGGCATCGTAGACGCGGACCAGGCCAAC
AGCCCGGTCGACCCGCACTCGCATGATGGCTACAAATGTGCCATCTGTCA
CGCGGAGCTCGTCAACGCCTACCTGCACTGCTCCGGTTGCGAGGTGCTGC
TGCGACGGGATTTCAACGTCTGCCTGCGCTGCCACACTGCCGGCGCCAAG
AACTTCACCGCCACCGTGGCCGCCGCCAACGCCGGCGGAAGCATCATGGT
GGTGCCGTGGAGCAATGCGTGGGTGCCGAACTTTACGAACTTCAAGCACC
TGACGTTCGAGACGGCACACACGCGGGAGCAGCGGCGGGAGGCGATCCGG
TACGAGCTCCACAATAAGTCGGAGAAGTGCCCGTGCTCCCAGCGGAAGTG
CGCAGTATGCAAGCTGTGCTCGAGCTGCGCCTGCGACTGCCATGCCGCCT
TCCAGCCCCGCTACCGTTTTCAGAACGGTTGCGGGATGCGGGCCCTAGCC
ATGCGGGCCACCGCCGCCGCCGCGGCAGCGGCGGTGGCAGCGGAGGGCCT
CGCGGGGAGCGCGGCAGCCGCCGCGGCCATGGCGGCCGCAGACAAGGCGG
CGGCCAACCTGGCTACCGAGCCTGACGTTGGATACTTGGTACCGGCAGCG
GCGGCGGCGAATGGCATCGCAGCATGGGTTGCGAGTCAGGGTGCGGCAGC
GGAGGGAAAAAACAGCGGGCACCGCAGCAGCAGGGGTGGCGGTGGCGGCG
GTGGGGACAGCGGCAAGGGGCGCGGTCGTGGCGGCGGAGGTAACGGCCGC
AACAGCACCGCGCGCGGCCGAGGGCGCGGGCGCGGCGGCGCTGGCCGAGG
CGACGCACTCGACGGCGTAGAACCTGCTACGGACGGCGCTGTGGCGGCAG
CGGTGCCAGCTGCCCGCCGCCGGGGTCGCCCGCCAATGATGCGACCTGTT
GAGGAAATTCCTGCCGTCGCGAAAGCCACCTCTGCGGAAGCCGTTGCCAA
AGCCGCTGCCGCCGAAGATGCCACCGCTGTCGAAGTTGCTGCTGCCACAG
CCGCCACTGGTAGCAACCGGCCAGCAAGTGGCGACGGCGCTGCGCCCAGA
GACGACGGCTCCGGGACGCCTCGCGATTGTCTTCGCAGAGCGAATAGCGG
CACGGGAGCGCAAAGCGCGAACGGCGGCAAAGAAGCCACGGCCCTTCCGA
GCGCTGCCACTGACCGCCCAAGGCGAAATGCGAGCAAGCGCGCAGAGGCT
GTGGCAGGCGGCGAGGGCAGCAGTGACGAAAGCGACGGCGACGTGATCGC
TGATCGCCGGAATAGAGCTACCAAGAAGCACTCCCGTGACGAGACG
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