mRNA_P-wetherbeei_contig59322.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59322.1.1
Unique NamemRNA_P-wetherbeei_contig59322.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A7X9KI18_9ACTN (MATE family efflux transporter n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KI18_9ACTN)

HSP 1 Score: 219 bits (558), Expect = 4.430e-67
Identity = 116/157 (73.89%), Postives = 126/157 (80.25%), Query Frame = 1 
Query:    1 QRFMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRRW 471
            Q FMFLAL LDALAIPAQSLVAGALGS     A RVG  S RLS+W   +LA  LAAASP  PH+FSGD  VRSRLT GLL+LA+MQ PGAVAFA DGALIGA DER+LGRQA+ NL+G+ PLALATL+ P LGLAGLWGAQLMWM LRA VN RRW
Sbjct:  272 QLFMFLALVLDALAIPAQSLVAGALGSGRPGEASRVGRSSTRLSVWAAVVLATALAAASPFAPHIFSGDADVRSRLTAGLLILAVMQFPGAVAFAYDGALIGAKDERWLGRQAIYNLLGYAPLALATLLAPSLGLAGLWGAQLMWMSLRAWVNSRRW 428
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A6I3WN83_9ACTN (MATE family efflux transporter n=2 Tax=root TaxID=1 RepID=A0A6I3WN83_9ACTN)

HSP 1 Score: 193 bits (490), Expect = 5.320e-57
Identity = 97/156 (62.18%), Postives = 116/156 (74.36%), Query Frame = 1 
Query:    1 QRFMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            Q F FLAL LDALAIPAQSLVAGA+G  D   A  VGW S +LSL+ G  L +++ A SP +PH+F+GD AV SR+T GLL LA++Q+PGAVAFALDGALIG  D +FLGR AV NL+ + P  +ATL+ P LG+ GLWG QL WM LRA VN RR
Sbjct:  275 QLFSFLALILDALAIPAQSLVAGAMGGLDAGSAMAVGWSSAKLSLYVGGGLCVLVGATSPFVPHIFTGDGAVISRVTAGLLFLAVIQIPGAVAFALDGALIGGQDGKFLGRAAVFNLVAYAPFLIATLVHPALGIGGLWGGQLAWMTLRAVVNARR 430
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A3C2AZM5_9ACTN (MATE family efflux transporter (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AZM5_9ACTN)

HSP 1 Score: 186 bits (472), Expect = 1.930e-56
Identity = 99/157 (63.06%), Postives = 116/157 (73.89%), Query Frame = 1 
Query:    1 QRFMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRRW 471
            Q F+FLAL LDALA+P  SLVAG LG+   D A  +G  S RLSLW GA L + LAA +P IP LF+ D AV+SR+TG LL+LA+MQLPGAVAFALDGALIGAHD  +LGRQA LNL+ F+P    T+  P LGL G+W AQL+WM  RA VN RRW
Sbjct:   86 QLFIFLALVLDALAVPLHSLVAGELGAGRADAAAHIGRRSMRLSLWGGASLGLSLAALAPFIPLLFTADSAVQSRVTGALLVLALMQLPGAVAFALDGALIGAHDMGWLGRQAALNLLAFLPALAVTVRWPQLGLMGIWAAQLVWMTTRAVVNHRRW 242
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A7W0KXZ0_9ACTN (MATE family efflux transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXZ0_9ACTN)

HSP 1 Score: 172 bits (436), Expect = 4.950e-52
Identity = 94/154 (61.04%), Postives = 108/154 (70.13%), Query Frame = 1 
Query:    7 FMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            F FLAL LDALAIPAQ+LVA  LG DD+  A  +   S RLS+W  A LA++LAAA+PL+PH FSGD AV  R T  L  LA + LPGAVAFALDG LIGA D RFLGR A   LI   PLA+  L  PGLG+AG+W   L+WM LRA VN+RR
Sbjct:   16 FGFLALVLDALAIPAQTLVAEELGRDDLPQAAAIADRSTRLSVWAAAALAVLLAAAAPLLPHAFSGDPAVVERATSALWWLAAVLLPGAVAFALDGVLIGAGDYRFLGRAAFGYLIAVAPLAVTVLAAPGLGIAGIWAGMLVWMVLRAIVNYRR 169
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A6C7EDV0_ILUCY (Putative MatE family transporter n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EDV0_ILUCY)

HSP 1 Score: 149 bits (377), Expect = 2.310e-40
Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 1 
Query:    7 FMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            F+FLAL LDALA+PAQ+LVA  LG     GA  V   + RLS++ G  LAIVLAAASPL+  +FS +  V SR T  LL LA+M +PG+VAFA DG+LIGA D  FLGR A+  L+  +P+A A ++  GLG+AG+W   L+WM LRA VN RR
Sbjct:  272 FLFLALTLDALAVPAQTLVAEELGKGG-PGADEVSRRAVRLSVFIGIGLAIVLAAASPLVSRIFSNEGDVTSRATVALLFLAVMMIPGSVAFATDGSLIGAGDYEFLGRAALGYLLAVIPIAAAVVVVDGLGIAGIWLGLLVWMTLRAAVNHRR 424
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A662DXD3_9ACTN (MATE family efflux transporter (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DXD3_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 6.840e-40
Identity = 81/154 (52.60%), Postives = 106/154 (68.83%), Query Frame = 1 
Query:    7 FMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            F+F+ALALDALA+PAQ+LVA  LG     GA  +     RLS++ GA +A ++A ++P++P LF+ D+AV SR T  L+ LAI+ LPGA+AFA DG LIGA D RFLGR A+  L+  VP+A   L  P LG+AG+W    +WM LRA VN RR
Sbjct:  242 FLFMALALDALAVPAQTLVADELGQGT-GGAPVIAGRVVRLSVFAGASMAALIAISAPVLPRLFTSDEAVISRATAALVFLAILLLPGALAFAYDGVLIGAADYRFLGRAALAYLVAVVPIAAVVLTTPSLGIAGIWIGLTVWMVLRAVVNRRR 394
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A4R7HZI9_9ACTN (Putative MATE family efflux protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HZI9_9ACTN)

HSP 1 Score: 148 bits (373), Expect = 9.530e-40
Identity = 83/154 (53.90%), Postives = 104/154 (67.53%), Query Frame = 1 
Query:    7 FMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            F+FLAL LDA A+PA +LVA   G  D+ GA+ V   S  LS+  G  L +++AA SPLIP +FS D  V S  T GLL LA+M +PGAVAFA DG LIGA D RFLG  A+  L+   P+A+ TL+ P LG++G+WG  L+WM LRA VN RR
Sbjct:  278 FIFLALVLDAFAVPAHTLVAEEEGRGDLAGARFVARRSVTLSMIVGVGLGVLIAALSPLIPRVFSDDADVTSTATVGLLWLAVMMIPGAVAFAHDGILIGAGDYRFLGLAALGYLVAVTPIAVFTLLTPSLGISGIWGGLLVWMILRAVVNDRR 431
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: UPI0003474D96 (MATE family efflux transporter n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI0003474D96)

HSP 1 Score: 145 bits (365), Expect = 1.190e-38
Identity = 81/154 (52.60%), Postives = 105/154 (68.18%), Query Frame = 1 
Query:    7 FMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            F FLAL LDALAIPAQ+LVA  LG     G+  V   S RLSL  G  LA++L  ++PL+  LF+ D AV SR T GLL+LA++ +PG++AF+ DG+LIGA D  FLGR A+  L+   P+A+  L+ P LG+ G+WG  L+WM LRA VN RR
Sbjct:  270 FSFLALTLDALAIPAQTLVAEELGKGGT-GSTEVAERSARLSLRIGFGLAVLLGLSAPLVSRLFTTDPAVISRATAGLLILAVVMIPGSLAFSTDGSLIGAGDYEFLGRAALAYLVAVTPIAVIVLMFPELGIVGIWGGLLIWMVLRAVVNLRR 422
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A812V852_9DINO (Tryptophan--tRNA ligase (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812V852_9DINO)

HSP 1 Score: 148 bits (373), Expect = 2.480e-38
Identity = 83/154 (53.90%), Postives = 104/154 (67.53%), Query Frame = 1 
Query:    7 FMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            F+FLAL LDA A+PA +LVA   G  D+ GA+ V   S  LS+  G  L +++AA SPLIP +FS D  V S  T GLL LA+M +PGAVAFA DG LIGA D RFLG  A+  L+   P+A+ TL+ P LG++G+WG  L+WM LRA VN RR
Sbjct:  810 FIFLALVLDAFAVPAHTLVAEEEGRGDLAGARFVARRSVTLSMIVGVGLGVLIAALSPLIPRVFSDDADVTSTATVGLLWLAVMMIPGAVAFAHDGILIGAGDYRFLGLAALGYLVAVTPIAVFTLLTPSLGISGIWGGLLVWMILRAVVNDRR 963
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BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Match: A0A848UHX2_9ACTN (MATE family efflux transporter n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UHX2_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 4.970e-38
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 1 
Query:    7 FMFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAIVLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGAHDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVNWRR 468
            F FLAL+LDALA+PAQ++VA  LG  D+  A  V   + RLS+  G  L ++LA  +P++P++F+ D AV  R T  L  LA M LPGA+AFA DG LIGA D RFLGR A   L+   P+ +  L EP LG+AG+WG  L+WM +RA VN RR
Sbjct:  276 FFFLALSLDALAVPAQTIVAEELGRSDVATAAHVARRAVRLSVVTGLGLGLLLAVIAPVLPNVFTDDPAVADRATSALWWLAAMMLPGAIAFAHDGILIGAGDYRFLGRAAFGYLVVVAPIGILVLWEPSLGVAGIWGGLLVWMVVRAVVNDRR 429
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59322.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KI18_9ACTN4.430e-6773.89MATE family efflux transporter n=2 Tax=Actinobacte... [more]
A0A6I3WN83_9ACTN5.320e-5762.18MATE family efflux transporter n=2 Tax=root TaxID=... [more]
A0A3C2AZM5_9ACTN1.930e-5663.06MATE family efflux transporter (Fragment) n=1 Tax=... [more]
A0A7W0KXZ0_9ACTN4.950e-5261.04MATE family efflux transporter n=1 Tax=Acidimicrob... [more]
A0A6C7EDV0_ILUCY2.310e-4055.19Putative MatE family transporter n=1 Tax=Ilumatoba... [more]
A0A662DXD3_9ACTN6.840e-4052.60MATE family efflux transporter (Fragment) n=1 Tax=... [more]
A0A4R7HZI9_9ACTN9.530e-4053.90Putative MATE family efflux protein n=1 Tax=Ilumat... [more]
UPI0003474D961.190e-3852.60MATE family efflux transporter n=1 Tax=Ilumatobact... [more]
A0A812V852_9DINO2.480e-3853.90Tryptophan--tRNA ligase (Fragment) n=1 Tax=Symbiod... [more]
A0A848UHX2_9ACTN4.970e-3851.30MATE family efflux transporter n=1 Tax=Ilumatobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59322contigP-wetherbeei_contig59322:3..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_24940
Preferred namedinF
PFAMsMatE
Model size471
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.59e-40
EggNOG OGsCOG0534@1|root,COG0534@2|Bacteria,2GJE3@201174|Actinobacteria
DescriptionMATE efflux family protein
Cds size462
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.3623567-UTR-P-wetherbeei_contig59322:2..111683186876.3623567-UTR-P-wetherbeei_contig59322:2..11Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59322 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.3722203-CDS-P-wetherbeei_contig59322:11..4731683186876.3722203-CDS-P-wetherbeei_contig59322:11..473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59322 12..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59322.1.1prot_P-wetherbeei_contig59322.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59322 12..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59322.1.1

>prot_P-wetherbeei_contig59322.1.1 ID=prot_P-wetherbeei_contig59322.1.1|Name=mRNA_P-wetherbeei_contig59322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MFLALALDALAIPAQSLVAGALGSDDIDGAQRVGWISNRLSLWCGALLAI
VLAAASPLIPHLFSGDDAVRSRLTGGLLLLAIMQLPGAVAFALDGALIGA
HDERFLGRQAVLNLIGFVPLALATLIEPGLGLAGLWGAQLMWMFLRATVN
WRRW
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mRNA from alignment at P-wetherbeei_contig59322:3..473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59322.1.1 ID=mRNA_P-wetherbeei_contig59322.1.1|Name=mRNA_P-wetherbeei_contig59322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig59322:3..473+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGGTTCATGTTCCTCGCACTCGCGCTCGATGCACTGGCGATCCCCGC
GCAGTCGTTGGTCGCCGGCGCGTTGGGCAGCGACGACATCGACGGCGCGC
AGCGCGTCGGGTGGATCAGCAACCGGCTGTCGCTGTGGTGCGGCGCGCTG
CTGGCGATCGTGCTCGCCGCGGCGAGCCCGTTGATCCCGCACCTGTTCAG
TGGCGACGACGCGGTGCGGTCGCGCCTCACGGGCGGTCTGCTCCTGCTGG
CGATCATGCAGCTGCCCGGCGCTGTCGCGTTCGCGCTGGACGGAGCGCTG
ATCGGCGCGCACGACGAACGCTTCCTCGGCCGCCAGGCGGTGCTCAACCT
GATCGGCTTCGTGCCCCTCGCGCTGGCGACGCTGATCGAACCCGGCCTCG
GGCTGGCCGGTCTGTGGGGCGCCCAGCTGATGTGGATGTTCCTACGCGCC
ACCGTCAACTGGCGTCGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59322:3..473+

>mRNA_P-wetherbeei_contig59322.1.1 ID=mRNA_P-wetherbeei_contig59322.1.1|Name=mRNA_P-wetherbeei_contig59322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig59322:3..473+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCTCGCACTCGCGCTCGATGCACTGGCGATCCCCGCGCAGTCGTT
GGTCGCCGGCGCGTTGGGCAGCGACGACATCGACGGCGCGCAGCGCGTCG
GGTGGATCAGCAACCGGCTGTCGCTGTGGTGCGGCGCGCTGCTGGCGATC
GTGCTCGCCGCGGCGAGCCCGTTGATCCCGCACCTGTTCAGTGGCGACGA
CGCGGTGCGGTCGCGCCTCACGGGCGGTCTGCTCCTGCTGGCGATCATGC
AGCTGCCCGGCGCTGTCGCGTTCGCGCTGGACGGAGCGCTGATCGGCGCG
CACGACGAACGCTTCCTCGGCCGCCAGGCGGTGCTCAACCTGATCGGCTT
CGTGCCCCTCGCGCTGGCGACGCTGATCGAACCCGGCCTCGGGCTGGCCG
GTCTGTGGGGCGCCCAGCTGATGTGGATGTTCCTACGCGCCACCGTCAAC
TGGCGTCGCTGG
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