mRNA_P-wetherbeei_contig5932.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5932.1.1
Unique NamemRNA_P-wetherbeei_contig5932.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5932.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5932contigP-wetherbeei_contig5932:2481..3637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1158
Hectar predicted targeting categoryother localisation
Exons1
Cds size1002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.3153744-UTR-P-wetherbeei_contig5932:2480..26351683186876.3153744-UTR-P-wetherbeei_contig5932:2480..2635Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5932 2481..2635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.326327-CDS-P-wetherbeei_contig5932:2635..36371683186876.326327-CDS-P-wetherbeei_contig5932:2635..3637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5932 2636..3637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5932.1.1prot_P-wetherbeei_contig5932.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5932 2636..3637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5932.1.1

>prot_P-wetherbeei_contig5932.1.1 ID=prot_P-wetherbeei_contig5932.1.1|Name=mRNA_P-wetherbeei_contig5932.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
MRSGSSQQPKPKRKGSFFDSLVFSVTGLRGEEDGQSSAPQATEAPVTLKE
KALASQRTETDDAASAATPSPSSTQRASLTKMSSVRARAAAFEATSAAGA
SVSPVRRPSPKMSAAAAAAQSSMPVTSGESCPAVKGDLERSPAGSVRERA
RMFGGKKADAPTGATSQRSFSPTPMPRPAAALAVPTSKAAAAPAPATTAA
AEVSAVEEDALAKIRKPFETSPPFSMLLPSPATAVAATAAAAATESSEWP
SARSWDSPPNSSVVVPVENSPEPTTSTMSPSPLPEVLTAFAAWAAASPSR
LTAAGRDGAELPPPPSLAAADDVSSRQLPAAGER
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mRNA from alignment at P-wetherbeei_contig5932:2481..3637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5932.1.1 ID=mRNA_P-wetherbeei_contig5932.1.1|Name=mRNA_P-wetherbeei_contig5932.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1157bp|location=Sequence derived from alignment at P-wetherbeei_contig5932:2481..3637+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGGCGTTGCGCATGTTTGCCGCTAGCCCGTTCCTTTTCTGCCAGCCTC
CGAGCTCCCGCGCGCGGAATCGGCTGCTAATTCCTTTTCCTGGAAAACCG
TTAACTAAAATTTAGAACACACTGGAAGAAGCCTGTTCATATTTTACCGA
GGAAAATGCGCTCCGGCAGCTCTCAGCAGCCAAAGCCGAAACGCAAGGGC
AGCTTTTTTGACTCCCTAGTCTTCTCAGTTACTGGGCTGCGGGGTGAAGA
GGATGGGCAAAGCTCTGCTCCACAGGCCACCGAGGCGCCTGTTACGCTCA
AAGAGAAGGCTTTAGCGTCCCAAAGGACAGAAACCGACGATGCAGCGAGC
GCGGCCACGCCCTCGCCTTCGTCTACTCAACGCGCTTCCCTCACAAAGAT
GAGCTCTGTGCGAGCGAGGGCTGCGGCGTTTGAGGCCACGTCGGCCGCCG
GCGCCAGCGTCAGTCCCGTACGCCGGCCTAGCCCGAAGATGAGCGCAGCA
GCGGCGGCCGCCCAGTCTTCAATGCCTGTGACATCAGGAGAATCCTGTCC
AGCAGTGAAAGGCGACCTTGAGCGTTCCCCGGCGGGCTCTGTTCGCGAAC
GGGCTCGCATGTTTGGAGGAAAAAAGGCCGACGCGCCCACGGGCGCAACG
AGCCAGCGAAGTTTTTCGCCAACGCCAATGCCGCGGCCGGCGGCGGCATT
GGCCGTGCCAACATCGAAAGCTGCCGCGGCCCCTGCACCCGCAACCACCG
CCGCTGCCGAAGTGTCTGCAGTTGAAGAGGATGCATTGGCAAAGATTCGA
AAGCCGTTCGAGACGTCGCCGCCGTTCTCGATGCTGCTGCCGAGCCCAGC
CACGGCAGTGGCTGCGACAGCGGCGGCCGCGGCGACCGAGTCGTCGGAAT
GGCCGTCGGCTCGGAGCTGGGATTCCCCGCCCAACTCTTCCGTTGTCGTG
CCCGTAGAAAACTCACCGGAACCGACGACCAGCACGATGTCGCCGTCGCC
TCTGCCAGAGGTTCTCACGGCTTTTGCCGCGTGGGCGGCGGCCTCGCCGT
CGCGGCTCACGGCGGCGGGAAGAGACGGCGCGGAGTTGCCGCCGCCGCCG
TCGCTGGCGGCGGCGGACGACGTCTCGTCCAGGCAGCTGCCGGCGGCGGG
GGAGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5932:2481..3637+

>mRNA_P-wetherbeei_contig5932.1.1 ID=mRNA_P-wetherbeei_contig5932.1.1|Name=mRNA_P-wetherbeei_contig5932.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig5932:2481..3637+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTCCGGCAGCTCTCAGCAGCCAAAGCCGAAACGCAAGGGCAGCTT
TTTTGACTCCCTAGTCTTCTCAGTTACTGGGCTGCGGGGTGAAGAGGATG
GGCAAAGCTCTGCTCCACAGGCCACCGAGGCGCCTGTTACGCTCAAAGAG
AAGGCTTTAGCGTCCCAAAGGACAGAAACCGACGATGCAGCGAGCGCGGC
CACGCCCTCGCCTTCGTCTACTCAACGCGCTTCCCTCACAAAGATGAGCT
CTGTGCGAGCGAGGGCTGCGGCGTTTGAGGCCACGTCGGCCGCCGGCGCC
AGCGTCAGTCCCGTACGCCGGCCTAGCCCGAAGATGAGCGCAGCAGCGGC
GGCCGCCCAGTCTTCAATGCCTGTGACATCAGGAGAATCCTGTCCAGCAG
TGAAAGGCGACCTTGAGCGTTCCCCGGCGGGCTCTGTTCGCGAACGGGCT
CGCATGTTTGGAGGAAAAAAGGCCGACGCGCCCACGGGCGCAACGAGCCA
GCGAAGTTTTTCGCCAACGCCAATGCCGCGGCCGGCGGCGGCATTGGCCG
TGCCAACATCGAAAGCTGCCGCGGCCCCTGCACCCGCAACCACCGCCGCT
GCCGAAGTGTCTGCAGTTGAAGAGGATGCATTGGCAAAGATTCGAAAGCC
GTTCGAGACGTCGCCGCCGTTCTCGATGCTGCTGCCGAGCCCAGCCACGG
CAGTGGCTGCGACAGCGGCGGCCGCGGCGACCGAGTCGTCGGAATGGCCG
TCGGCTCGGAGCTGGGATTCCCCGCCCAACTCTTCCGTTGTCGTGCCCGT
AGAAAACTCACCGGAACCGACGACCAGCACGATGTCGCCGTCGCCTCTGC
CAGAGGTTCTCACGGCTTTTGCCGCGTGGGCGGCGGCCTCGCCGTCGCGG
CTCACGGCGGCGGGAAGAGACGGCGCGGAGTTGCCGCCGCCGCCGTCGCT
GGCGGCGGCGGACGACGTCTCGTCCAGGCAGCTGCCGGCGGCGGGGGAGA
GG
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