mRNA_P-wetherbeei_contig59296.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59296.1.1
Unique NamemRNA_P-wetherbeei_contig59296.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59296.1.1 vs. uniprot
Match: UPI001C4922E8 (C1 family peptidase n=1 Tax=Clostridium thailandense TaxID=2794346 RepID=UPI001C4922E8)

HSP 1 Score: 142 bits (358), Expect = 6.630e-37
Identity = 73/164 (44.51%), Postives = 103/164 (62.80%), Query Frame = 1
Query:    4 FEDDNGDWTESDYHETAAKLFGNDEWFGDTAEKRYQDEGYTPVAQTQHYEQVLTQVVPAANDTVSFFEKAGQLVLQGFVTVAALELLRHQFPQADLSQLDVTVPPPDK------PPAEPQPLPPALQNIAVADKVDLRKFCTPVADQGQTSRCAAFAWTHALEL 477
            FE+D GDW+  DY  +A   FG  ++FGDTAE++Y DEGY      + Y   L   +   +D V F+     +V +GFV++ +L +++ +FP ADLS+L V+VP          P    + LP ++ NI   DKVDLRK+C+PV DQGQTSRC+AFAWTHA+E+
Sbjct:  175 FEEDEGDWSVEDYESSAQAFFGEGDYFGDTAEQQYMDEGYELSEDNEQYLSELENEIEGISDVVQFYNSDDTIVPRGFVSMESLSVIKDRFPDADLSKLHVSVPAKKSKKSGRSPKMSKKSLPQSVSNIDSQDKVDLRKYCSPVGDQGQTSRCSAFAWTHAVEM 338          
BLAST of mRNA_P-wetherbeei_contig59296.1.1 vs. uniprot
Match: A0A2V8U721_9BACT (Pept_C1 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8U721_9BACT)

HSP 1 Score: 129 bits (323), Expect = 2.600e-32
Identity = 70/135 (51.85%), Postives = 89/135 (65.93%), Query Frame = 1
Query:   76 EWFGDTAEKRYQDEGYTPVAQTQHYEQVLTQVVPAANDTVSFFEKAGQLVLQGFVTVAALELLRHQFPQADLSQLDVTVPPPDKPPAEPQPLPPALQNIAVADKVDLRKFCTPVADQGQTSRCAAFAWTHALELV 480
            E+FGDT   +   EGY P  + + + Q   +V P +++TV  FE+ G L   G V  A LE LR ++   DLS L+VT+PP  +P  +PQPLPPA + I  AD VDLRK+CTPV DQGQT RC+AFAWTHA ELV
Sbjct:  139 EFFGDTMAAQRAAEGYQPF-EDERFMQGFEEVAPGSSETVRLFERDGHLSAFGMVPAAMLEYLRMKYSGIDLSNLEVTMPPRGEP-VQPQPLPPAFEAIEPADAVDLRKYCTPVGDQGQTGRCSAFAWTHAAELV 271          
BLAST of mRNA_P-wetherbeei_contig59296.1.1 vs. uniprot
Match: A0A0E3M8C8_CLOSL (Papain family cysteine protease n=4 Tax=Clostridium TaxID=1485 RepID=A0A0E3M8C8_CLOSL)

HSP 1 Score: 115 bits (287), Expect = 7.650e-27
Identity = 64/164 (39.02%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   28 TESDYHETAAKLFGNDEWFGDTAEKRYQDEGYTPVAQTQHYEQVLTQVVPAANDTVSFFEKAGQLVLQGFVTVAALELLRHQFPQADLSQLDVTVP--------------PPDKPPAEPQPLPPALQNIAVADKVDLRKFCTPVADQGQTSRCAAFAWTHALEL 477
            T  DY  +A   FG+ E+FGDTAE++Y D+GY      + Y   L   +   +D V F+     +V +GFV++  L  ++   P ADLS+L   VP               P    +  + L  ++ NI   D VDLRK+C+PV DQGQTSRC+AFAWTHA+E+
Sbjct:  165 TPEDYESSAQAFFGDGEYFGDTAEQQYMDDGYELCEDNEQYLSELEDEIEGISDVVQFYNLDDTVVPRGFVSMEELSTIKKLHPDADLSKLHTAVPVKKSASKKAGKSRKSPISQKSSKKKLAGSVSNIDSKDTVDLRKYCSPVGDQGQTSRCSAFAWTHAIEM 328          
BLAST of mRNA_P-wetherbeei_contig59296.1.1 vs. uniprot
Match: A0A4V1TGZ6_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4V1TGZ6_9DELT)

HSP 1 Score: 111 bits (277), Expect = 3.110e-26
Identity = 63/148 (42.57%), Postives = 89/148 (60.14%), Query Frame = 1
Query:   49 TAAKLFGNDEWFGDTAEKRYQDEGYTPV--AQTQHYEQVLTQVVPAANDTVSFFEKAGQLVLQGFVTVAALELLRHQFPQADLSQLDVTVPPP--DKPPAEPQPLPPALQNIAVADKVDLRKFCTPVADQGQTSRCAAFAWTHALELV 480
            +A +LF +  +  +  E+RY DEG  P   AQ   +E  +  + P A +T+  F + G+  L+GFV +  L+ L+ Q P  DL  + VT+     +K P  P+ LP +L+ +   D VDLRKF  P+ DQGQT+RCAAFAWTHALELV
Sbjct:  176 SAHELFADSPFLDEEPEQRYIDEGLQPASSAQEAQFEAAIDAIAPGAFETLMLFFEQGRPHLEGFVEMRQLKKLKKQLPDVDLRNVKVTLSSKKANKAPGRPKGLPRSLEGVDDRDAVDLRKFAPPIGDQGQTNRCAAFAWTHALELV 323          
BLAST of mRNA_P-wetherbeei_contig59296.1.1 vs. uniprot
Match: A0A4Q3JLF5_9DELT (Pept_C1 domain-containing protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q3JLF5_9DELT)

HSP 1 Score: 79.0 bits (193), Expect = 1.210e-14
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  253 LELLRHQFPQADLSQLDVTVP--PPDKPPAEPQPLPPALQNIAVADKVDLRKFCTPVADQGQTSRCAAFAWTHALELV 480
            L+ L+ Q P  DL  + VT+      K P  P+ LP +L+ +   D VDLRKF TP+ DQGQT+RCAAFAWTHALELV
Sbjct:    1 LKKLKKQLPDVDLRNVKVTLSGKKAGKAPGRPRGLPRSLEGVDDRDAVDLRKFATPIGDQGQTNRCAAFAWTHALELV 78          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59296.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001C4922E86.630e-3744.51C1 family peptidase n=1 Tax=Clostridium thailanden... [more]
A0A2V8U721_9BACT2.600e-3251.85Pept_C1 domain-containing protein n=1 Tax=Acidobac... [more]
A0A0E3M8C8_CLOSL7.650e-2739.02Papain family cysteine protease n=4 Tax=Clostridiu... [more]
A0A4V1TGZ6_9DELT3.110e-2642.57Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A4Q3JLF5_9DELT1.210e-1453.85Pept_C1 domain-containing protein (Fragment) n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59296contigP-wetherbeei_contig59296:3..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog536227.CcarbDRAFT_3857
PFAMsPeptidase_C1,Peptidase_C1_2
Model size480
Max annot lvl2|Bacteria
KEGG koko:K01372
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.44e-28
EggNOG OGsCOG4870@1|root,COG4870@2|Bacteria
EC3.4.22.40
Descriptiontransferase activity, transferring glycosyl groups
Cds size480
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.1753232-CDS-P-wetherbeei_contig59296:2..4821683186876.1753232-CDS-P-wetherbeei_contig59296:2..482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59296 3..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59296.1.1prot_P-wetherbeei_contig59296.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59296 3..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59296.1.1

>prot_P-wetherbeei_contig59296.1.1 ID=prot_P-wetherbeei_contig59296.1.1|Name=mRNA_P-wetherbeei_contig59296.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
DFEDDNGDWTESDYHETAAKLFGNDEWFGDTAEKRYQDEGYTPVAQTQHY
EQVLTQVVPAANDTVSFFEKAGQLVLQGFVTVAALELLRHQFPQADLSQL
DVTVPPPDKPPAEPQPLPPALQNIAVADKVDLRKFCTPVADQGQTSRCAA
FAWTHALELV
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mRNA from alignment at P-wetherbeei_contig59296:3..482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59296.1.1 ID=mRNA_P-wetherbeei_contig59296.1.1|Name=mRNA_P-wetherbeei_contig59296.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig59296:3..482+ (Phaeothamnion wetherbeei SAG_119_79)
GACTTCGAGGACGACAACGGCGACTGGACCGAGTCCGACTATCACGAGAC CGCGGCCAAGCTGTTTGGCAATGACGAGTGGTTTGGGGACACCGCCGAGA AACGCTATCAGGACGAGGGCTACACCCCCGTCGCGCAGACGCAGCACTAC GAACAGGTCCTGACCCAGGTCGTTCCCGCCGCCAACGATACCGTCAGCTT CTTCGAGAAGGCCGGCCAGCTGGTGCTCCAGGGCTTTGTCACGGTAGCTG CACTCGAGCTTCTGCGCCACCAGTTTCCGCAGGCCGACCTGAGTCAGCTC GACGTAACCGTTCCGCCCCCCGACAAGCCGCCGGCCGAGCCCCAGCCGCT GCCGCCCGCCCTGCAGAATATCGCGGTGGCCGATAAGGTCGATCTGCGTA AGTTCTGCACGCCGGTGGCCGATCAGGGGCAAACCAGCAGGTGCGCCGCT TTTGCGTGGACGCATGCTCTCGAGCTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59296:3..482+

>mRNA_P-wetherbeei_contig59296.1.1 ID=mRNA_P-wetherbeei_contig59296.1.1|Name=mRNA_P-wetherbeei_contig59296.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig59296:3..482+ (Phaeothamnion wetherbeei SAG_119_79)
GACTTCGAGGACGACAACGGCGACTGGACCGAGTCCGACTATCACGAGAC
CGCGGCCAAGCTGTTTGGCAATGACGAGTGGTTTGGGGACACCGCCGAGA
AACGCTATCAGGACGAGGGCTACACCCCCGTCGCGCAGACGCAGCACTAC
GAACAGGTCCTGACCCAGGTCGTTCCCGCCGCCAACGATACCGTCAGCTT
CTTCGAGAAGGCCGGCCAGCTGGTGCTCCAGGGCTTTGTCACGGTAGCTG
CACTCGAGCTTCTGCGCCACCAGTTTCCGCAGGCCGACCTGAGTCAGCTC
GACGTAACCGTTCCGCCCCCCGACAAGCCGCCGGCCGAGCCCCAGCCGCT
GCCGCCCGCCCTGCAGAATATCGCGGTGGCCGATAAGGTCGATCTGCGTA
AGTTCTGCACGCCGGTGGCCGATCAGGGGCAAACCAGCAGGTGCGCCGCT
TTTGCGTGGACGCATGCTCTCGAGCTGGTG
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