mRNA_P-wetherbeei_contig5929.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5929.1.1
Unique NamemRNA_P-wetherbeei_contig5929.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5929.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5929contigP-wetherbeei_contig5929:77..3216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1226325.HMPREF1548_05466
PFAMsAbhydrolase_5
Model size2533
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.5e-05
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,1V3S1@1239|Firmicutes,24GGH@186801|Clostridia,36V0N@31979|Clostridiaceae
DescriptionAlpha/beta hydrolase family
Cds size1980
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.1052954-UTR-P-wetherbeei_contig5929:76..811683186876.1052954-UTR-P-wetherbeei_contig5929:76..81Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5929 77..81 +
1683186876.1455567-UTR-P-wetherbeei_contig5929:2668..32161683186876.1455567-UTR-P-wetherbeei_contig5929:2668..3216Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5929 2669..3216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.1154177-CDS-P-wetherbeei_contig5929:81..3391683186876.1154177-CDS-P-wetherbeei_contig5929:81..339Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5929 82..339 +
1683186876.1266077-CDS-P-wetherbeei_contig5929:615..13101683186876.1266077-CDS-P-wetherbeei_contig5929:615..1310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5929 616..1310 +
1683186876.1359835-CDS-P-wetherbeei_contig5929:1641..26681683186876.1359835-CDS-P-wetherbeei_contig5929:1641..2668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5929 1642..2668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5929.1.1prot_P-wetherbeei_contig5929.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5929 82..2668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5929.1.1

>prot_P-wetherbeei_contig5929.1.1 ID=prot_P-wetherbeei_contig5929.1.1|Name=mRNA_P-wetherbeei_contig5929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=660bp
MDKGGLMTVPAAVVATSAAASDAELLGRAVQSMARIDSAALTSETGTTTA
AAGGKGSGYAAPELWGVVGHGRRGAALATLAAAALHPRVKMLVVLGAPPA
ESKAAAALGGRMYSVVVTAGATVSLTVETTAAAGTTADNGESGDTAAAAA
PPASPTSCEADAGSDAMAAGADAFAMADAKLVALPHASLMDLVTKPALEP
EIAGSEAGGGAAGATNLAVPHSGKTAGNCSGGDGSGGRGGHDSNNGRADA
PPAKAEDALAAFAAKAAKSASTAAAAAPFVIVAAELREGLGSCGYAELMA
EAEEFMKDSDDVTVHVDRDRRWTVFRPRIRRRSGGEGTANGTATTGSGAG
AGAASAAGAAGTAPAAVAETAVTTVTAVKAGLVFHHGATCPAEAYAALLH
ALAARGYLCVSVAAVGRDARNRVGAAREVVTALSATAAAEAAANDKIGTA
DIGTAAIATGGSSGSVPKRWFVGGHSMGGGAAIKFALELQWETDGEAVEP
SPPSLPPVSGESPPEVETSPLPSATGFRPGSVEGIVLFAGGPYGYGVRAA
DAPGARHLPCLQVFGTEDRFNGVLSGPFTDPMRYVDLYLRPVLPIEYITA
VRVVGGSHYGWGHYGKQKNYAFSRIPREEQIARGVATADVWMEAVLAGTR
QLEPAFQDV*
back to top

mRNA from alignment at P-wetherbeei_contig5929:77..3216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5929.1.1 ID=mRNA_P-wetherbeei_contig5929.1.1|Name=mRNA_P-wetherbeei_contig5929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3140bp|location=Sequence derived from alignment at P-wetherbeei_contig5929:77..3216+ (Phaeothamnion wetherbeei SAG_119_79)
CAGAGATGGACAAGGGTGGGCTCATGACGGTTCCCGCCGCTGTCGTCGCC
ACCTCCGCTGCCGCCTCCGACGCGGAACTGCTCGGCCGGGCGGTGCAGTC
GATGGCTCGGATCGACTCCGCTGCCTTGACCTCCGAAACTGGTACAACCA
CCGCGGCTGCCGGCGGCAAAGGCAGCGGTTACGCGGCACCGGAACTGTGG
GGCGTCGTGGGCCACGGCCGGCGGGGCGCCGCGCTGGCGACGCTCGCCGC
GGCGGCGCTGCACGTGAGCACCTTTCCTTCTGTCTCTTCCACTTTCACTC
CTTTTTTTCTGCCTCTCTATTTTTTCTTTCTCGCTTCCGCTTTGCCCCTT
CTTCTCTTTTTGTGCCACGTGCCGTTCAGCATGTGCGCCTCCAATTTGAT
TGCTGAACCGCTGGCGCTTTCCTTATTTTGCCTCATTGTTTCCAGTTCGT
CGTGTCATTCATGCGCCGGCCTCACTTCCGTTCGTCTCCGACTTTCCTTT
TCGTTCCACTCCCGGGACGCACGCCCCAATTTATCGCAGCCCCGCGTCAA
GATGCTGGTCGTCTTGGGAGCGCCGCCGGCGGAGAGCAAAGCTGCCGCCG
CCCTGGGTGGCCGGATGTACTCAGTCGTCGTAACCGCCGGTGCAACCGTC
AGCTTAACCGTCGAGACAACGGCTGCCGCCGGCACCACCGCCGACAATGG
AGAATCCGGCGATACGGCTGCCGCCGCTGCGCCTCCCGCCAGCCCGACCA
GCTGCGAGGCTGATGCTGGCAGCGACGCAATGGCAGCCGGCGCTGACGCC
TTCGCGATGGCGGACGCCAAGTTGGTGGCGCTACCGCATGCATCGCTCAT
GGATCTCGTTACGAAGCCGGCGCTGGAGCCAGAAATTGCCGGATCGGAAG
CGGGGGGCGGCGCCGCCGGAGCGACCAATTTGGCGGTGCCTCACAGCGGC
AAGACTGCGGGCAATTGCAGCGGTGGCGACGGCAGTGGCGGTCGTGGTGG
TCATGATTCGAACAATGGCAGAGCTGACGCTCCTCCCGCTAAGGCGGAAG
ATGCTTTGGCGGCGTTTGCTGCAAAGGCGGCAAAGTCGGCATCGACGGCG
GCGGCAGCGGCGCCGTTCGTGATTGTGGCGGCCGAGCTGCGGGAGGGCCT
CGGGTCATGCGGCTACGCGGAGCTGATGGCCGAGGCGGAGGAGTTTATGA
AGGACAGCGACGATGTCACGGTGCATGTGGACAGGTGGGTTCCATTCATT
ATTGGCTGCTGCACAGCGCTGCGACGGGCCGCGGCTCCTCCGCATATTTT
CATCGTGTGATATGCCTATCGACAGGCTGATTCGTCAAAATTGCGCTGCG
GGTCGCTTCGCGGTGCTGGTACTTTAGGCACCTCCTTTGCAGTCGTCAGT
GCTTGCAGCTCTCGCTACTCGTTTTGTTCGGCGTGCATCGCTTCGTTTTG
TGGCGTCCAAAAGACAGAGCATGCGTTTTTTGTGAAATTCAATGCGAAAC
CTCTTTTTTTGACACGCTCCCCAATTGGTCTCCCTGCTGCCGATTCGCCG
CAATCTGCTGCGCAGGGACCGCCGCTGGACCGTCTTCCGCCCTCGAATCC
GCCGTCGCAGCGGCGGCGAAGGGACCGCCAACGGCACCGCCACCACCGGC
TCCGGCGCCGGCGCCGGCGCCGCCAGTGCCGCCGGTGCCGCTGGCACCGC
CCCAGCCGCCGTCGCCGAAACGGCCGTGACGACCGTAACGGCAGTCAAGG
CTGGGCTGGTCTTCCACCACGGCGCGACGTGTCCAGCGGAGGCGTACGCG
GCGCTGCTGCACGCGCTCGCTGCCCGCGGCTACCTCTGCGTTTCTGTCGC
CGCCGTCGGCCGCGATGCCCGCAACCGAGTCGGCGCGGCGCGCGAAGTCG
TGACGGCGCTCTCGGCCACCGCCGCCGCCGAAGCCGCCGCAAACGACAAG
ATTGGCACTGCCGACATTGGCACCGCCGCGATAGCTACTGGCGGCAGCTC
GGGCAGCGTCCCGAAGCGGTGGTTTGTGGGAGGGCACTCGATGGGTGGTG
GCGCCGCCATCAAATTTGCGCTGGAATTGCAGTGGGAGACGGATGGAGAA
GCAGTGGAACCGTCGCCGCCGTCATTACCGCCCGTGTCTGGGGAGAGTCC
GCCGGAGGTCGAAACGTCACCGTTGCCGTCGGCGACGGGATTCCGGCCGG
GGTCTGTCGAGGGCATCGTGCTCTTCGCCGGCGGGCCGTACGGCTACGGC
GTCCGCGCCGCCGATGCGCCGGGTGCGCGGCACCTGCCGTGCCTGCAGGT
CTTCGGCACGGAGGACCGCTTCAATGGCGTCCTGTCGGGACCCTTCACGG
ATCCGATGCGGTACGTGGACTTGTACCTGCGGCCCGTGCTGCCCATCGAA
TACATCACGGCGGTGCGTGTGGTCGGCGGCAGCCACTACGGTTGGGGCCA
CTACGGCAAGCAGAAAAATTACGCCTTCAGTCGCATCCCGAGGGAAGAAC
AGATCGCGCGCGGCGTCGCCACTGCCGACGTCTGGATGGAGGCGGTGCTG
GCGGGCACGCGTCAGCTGGAGCCGGCCTTCCAAGACGTCTGATGAGACAT
TAAAAAGGGCAAAAATGCAGCGTTTCTGTAGAGGCTTTCCTAAGAATAAA
AGGCGTTCTGAAGCGGGTTGTGACAGCGGCGCCAATGCCGGCGGCAGCCG
GGATGCGGCCGGGTTGCCGCCTGAGTGGAAACGAGTTTGGACGAAGACCA
GGGTTCCGGGAAAGGTACTGCAGGTGGGGAAGTAGGTACGCGGAGACGGG
CGGCGGGGTGTAGAAGTTGTTTCGGGGGCCTGATTCCCCGCTTTGATGGT
AGGAGGAACTGAGTAGGTTTGATTTGGTTCTATTCTGTTTCGTGAGAGGC
AGCGGGCCGGGCGGCTTGCGTGTAACCAGTCCCGCCCGTCCGGACATAGG
TGCTCAGGAAATCGGGCCGCTTTCTTTTTGCTGGGTGGCTGGTTGGGGAC
ACATCCGTTTGCCGGAGGGAAAGGGAAAACAGGGAAGGTTAGCATATAGC
GTCCGGCTACTTCATAACAATAGTGAGTAAAGTCCCAACTAACCAGGAGG
CTAAGAAACGGGGATGATACACGCGGATGCGAAAAGGTGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5929:77..3216+

>mRNA_P-wetherbeei_contig5929.1.1 ID=mRNA_P-wetherbeei_contig5929.1.1|Name=mRNA_P-wetherbeei_contig5929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1980bp|location=Sequence derived from alignment at P-wetherbeei_contig5929:77..3216+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAAGGGTGGGCTCATGACGGTTCCCGCCGCTGTCGTCGCCACCTC
CGCTGCCGCCTCCGACGCGGAACTGCTCGGCCGGGCGGTGCAGTCGATGG
CTCGGATCGACTCCGCTGCCTTGACCTCCGAAACTGGTACAACCACCGCG
GCTGCCGGCGGCAAAGGCAGCGGTTACGCGGCACCGGAACTGTGGGGCGT
CGTGGGCCACGGCCGGCGGGGCGCCGCGCTGGCGACGCTCGCCGCGGCGG
CGCTGCACCCCCGCGTCAAGATGCTGGTCGTCTTGGGAGCGCCGCCGGCG
GAGAGCAAAGCTGCCGCCGCCCTGGGTGGCCGGATGTACTCAGTCGTCGT
AACCGCCGGTGCAACCGTCAGCTTAACCGTCGAGACAACGGCTGCCGCCG
GCACCACCGCCGACAATGGAGAATCCGGCGATACGGCTGCCGCCGCTGCG
CCTCCCGCCAGCCCGACCAGCTGCGAGGCTGATGCTGGCAGCGACGCAAT
GGCAGCCGGCGCTGACGCCTTCGCGATGGCGGACGCCAAGTTGGTGGCGC
TACCGCATGCATCGCTCATGGATCTCGTTACGAAGCCGGCGCTGGAGCCA
GAAATTGCCGGATCGGAAGCGGGGGGCGGCGCCGCCGGAGCGACCAATTT
GGCGGTGCCTCACAGCGGCAAGACTGCGGGCAATTGCAGCGGTGGCGACG
GCAGTGGCGGTCGTGGTGGTCATGATTCGAACAATGGCAGAGCTGACGCT
CCTCCCGCTAAGGCGGAAGATGCTTTGGCGGCGTTTGCTGCAAAGGCGGC
AAAGTCGGCATCGACGGCGGCGGCAGCGGCGCCGTTCGTGATTGTGGCGG
CCGAGCTGCGGGAGGGCCTCGGGTCATGCGGCTACGCGGAGCTGATGGCC
GAGGCGGAGGAGTTTATGAAGGACAGCGACGATGTCACGGTGCATGTGGA
CAGGGACCGCCGCTGGACCGTCTTCCGCCCTCGAATCCGCCGTCGCAGCG
GCGGCGAAGGGACCGCCAACGGCACCGCCACCACCGGCTCCGGCGCCGGC
GCCGGCGCCGCCAGTGCCGCCGGTGCCGCTGGCACCGCCCCAGCCGCCGT
CGCCGAAACGGCCGTGACGACCGTAACGGCAGTCAAGGCTGGGCTGGTCT
TCCACCACGGCGCGACGTGTCCAGCGGAGGCGTACGCGGCGCTGCTGCAC
GCGCTCGCTGCCCGCGGCTACCTCTGCGTTTCTGTCGCCGCCGTCGGCCG
CGATGCCCGCAACCGAGTCGGCGCGGCGCGCGAAGTCGTGACGGCGCTCT
CGGCCACCGCCGCCGCCGAAGCCGCCGCAAACGACAAGATTGGCACTGCC
GACATTGGCACCGCCGCGATAGCTACTGGCGGCAGCTCGGGCAGCGTCCC
GAAGCGGTGGTTTGTGGGAGGGCACTCGATGGGTGGTGGCGCCGCCATCA
AATTTGCGCTGGAATTGCAGTGGGAGACGGATGGAGAAGCAGTGGAACCG
TCGCCGCCGTCATTACCGCCCGTGTCTGGGGAGAGTCCGCCGGAGGTCGA
AACGTCACCGTTGCCGTCGGCGACGGGATTCCGGCCGGGGTCTGTCGAGG
GCATCGTGCTCTTCGCCGGCGGGCCGTACGGCTACGGCGTCCGCGCCGCC
GATGCGCCGGGTGCGCGGCACCTGCCGTGCCTGCAGGTCTTCGGCACGGA
GGACCGCTTCAATGGCGTCCTGTCGGGACCCTTCACGGATCCGATGCGGT
ACGTGGACTTGTACCTGCGGCCCGTGCTGCCCATCGAATACATCACGGCG
GTGCGTGTGGTCGGCGGCAGCCACTACGGTTGGGGCCACTACGGCAAGCA
GAAAAATTACGCCTTCAGTCGCATCCCGAGGGAAGAACAGATCGCGCGCG
GCGTCGCCACTGCCGACGTCTGGATGGAGGCGGTGCTGGCGGGCACGCGT
CAGCTGGAGCCGGCCTTCCAAGACGTCTGA
back to top