mRNA_P-wetherbeei_contig59269.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59269.1.1
Unique NamemRNA_P-wetherbeei_contig59269.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: UPI00159BE0F9 (CoA transferase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00159BE0F9)

HSP 1 Score: 100 bits (248), Expect = 1.490e-26
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MTSQ+A GA+AGLRVIDLTRVLGGPYCTQIL DHGA+++K+EPPAGDETR+W
Sbjct:    1 MTSQTATGAMAGLRVIDLTRVLGGPYCTQILADHGADVVKVEPPAGDETRDW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: W3RNB2_9BRAD (Carnitine dehydratase n=2 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RNB2_9BRAD)

HSP 1 Score: 105 bits (263), Expect = 8.090e-26
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            M +QSA GALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW
Sbjct:    1 MMTQSALGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: UPI001BC3CFB8 (CoA transferase n=1 Tax=Afipia sp. TaxID=1871052 RepID=UPI001BC3CFB8)

HSP 1 Score: 98.6 bits (244), Expect = 6.310e-24
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MTSQ A GA+AGLRV+DLTRVLGGPYCTQIL DHGA+++K+EPPAGDETR+W
Sbjct:    1 MTSQIATGAMAGLRVVDLTRVLGGPYCTQILADHGADVVKVEPPAGDETRDW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: A0A4V6BG11_9BRAD (CoA transferase n=11 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A4V6BG11_9BRAD)

HSP 1 Score: 99.8 bits (247), Expect = 1.540e-23
Identity = 42/52 (80.77%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MTSQ+A GA+AGLRV+DLTRVLGGPYCTQIL DHGA+++K+EPPAGDETR+W
Sbjct:    1 MTSQTATGAMAGLRVVDLTRVLGGPYCTQILADHGADVVKVEPPAGDETRDW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: A0A0Q6Z6S9_9BRAD (Carnitine dehydratase n=1 Tax=Afipia sp. Root123D2 TaxID=1736436 RepID=A0A0Q6Z6S9_9BRAD)

HSP 1 Score: 97.8 bits (242), Expect = 7.940e-23
Identity = 42/52 (80.77%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MT+Q+A GA+AGLRVIDL+RVLGGPYCTQIL DHGA+I+K+EPPAGDETR+W
Sbjct:    1 MTTQAAAGAMAGLRVIDLSRVLGGPYCTQILADHGADIVKVEPPAGDETRDW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: A0A1E8CGN7_9GAMM (Carnitine dehydratase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1E8CGN7_9GAMM)

HSP 1 Score: 97.1 bits (240), Expect = 1.520e-22
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MT QS+ GAL GLRVIDLTRVLGGPYCTQ+LGDHGAEI+K+EPP GDE R+W
Sbjct:    1 MTEQSSNGALEGLRVIDLTRVLGGPYCTQVLGDHGAEIVKIEPPQGDEVRDW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: UPI001C247B64 (CoA transferase n=1 Tax=Nocardia sp. ncl2 TaxID=2815723 RepID=UPI001C247B64)

HSP 1 Score: 89.4 bits (220), Expect = 3.660e-22
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MT ++A GALAG+RV+DL+R+LGGPYC QILGDHGA+++K+EPP GD+TR W
Sbjct:    1 MTDRAATGALAGIRVLDLSRILGGPYCGQILGDHGADVLKVEPPEGDDTRTW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: UPI001BAC8D87 (CoA transferase n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAC8D87)

HSP 1 Score: 95.5 bits (236), Expect = 5.650e-22
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MTSQ+A GA+AGLRVIDLTRVLGGPYCTQ+L DHGA++IK+EPPAGDE REW
Sbjct:    1 MTSQAA-GAMAGLRVIDLTRVLGGPYCTQVLADHGADVIKVEPPAGDEVREW 51
[Close]
BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: A0A8J3E2X8_9PROT (CoA transferase n=1 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E2X8_9PROT)

HSP 1 Score: 95.1 bits (235), Expect = 7.960e-22
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MT Q   GALAG+RV+DLTRVLGGPYCTQILGDHGAEIIK+EPP GDETR W
Sbjct:    1 MTIQPHPGALAGIRVVDLTRVLGGPYCTQILGDHGAEIIKIEPPTGDETRGW 52
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BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Match: A4YJJ8_BRASO (Putative caiB/baiF CoA-transferase family protein Putative Formyl-CoA transferase n=10 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A4YJJ8_BRASO)

HSP 1 Score: 94.7 bits (234), Expect = 1.080e-21
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETREW 156
            MT Q A GA+AGLRVIDLTRVLGGPYCTQIL DHGA++IK+EPPAGDE R+W
Sbjct:    1 MTPQFAPGAMAGLRVIDLTRVLGGPYCTQILADHGADVIKVEPPAGDEVRDW 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59269.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00159BE0F91.490e-2682.69CoA transferase n=1 Tax=Escherichia coli TaxID=562... [more]
W3RNB2_9BRAD8.090e-2694.23Carnitine dehydratase n=2 Tax=Afipia sp. P52-10 Ta... [more]
UPI001BC3CFB86.310e-2480.77CoA transferase n=1 Tax=Afipia sp. TaxID=1871052 R... [more]
A0A4V6BG11_9BRAD1.540e-2380.77CoA transferase n=11 Tax=Bradyrhizobiaceae TaxID=4... [more]
A0A0Q6Z6S9_9BRAD7.940e-2380.77Carnitine dehydratase n=1 Tax=Afipia sp. Root123D2... [more]
A0A1E8CGN7_9GAMM1.520e-2280.77Carnitine dehydratase n=2 Tax=Gammaproteobacteria ... [more]
UPI001C247B643.660e-2269.23CoA transferase n=1 Tax=Nocardia sp. ncl2 TaxID=28... [more]
UPI001BAC8D875.650e-2282.69CoA transferase n=1 Tax=unclassified Bradyrhizobiu... [more]
A0A8J3E2X8_9PROT7.960e-2282.69CoA transferase n=1 Tax=Aliidongia dinghuensis Tax... [more]
A4YJJ8_BRASO1.080e-2180.77Putative caiB/baiF CoA-transferase family protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59269contigP-wetherbeei_contig59269:208..363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1429916.X566_08565
Preferred nameMA20_24210
PFAMsCoA_transf_3
Model size156
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07749
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.33e-26
EggNOG OGsCOG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JQQD@41294|Bradyrhizobiaceae
EC2.8.3.16
DescriptionCoA-transferase family III
Cds size156
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.8311934-CDS-P-wetherbeei_contig59269:207..3631683186875.8311934-CDS-P-wetherbeei_contig59269:207..363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59269 208..363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59269.1.1prot_P-wetherbeei_contig59269.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59269 208..363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59269.1.1

>prot_P-wetherbeei_contig59269.1.1 ID=prot_P-wetherbeei_contig59269.1.1|Name=mRNA_P-wetherbeei_contig59269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MTSQSAFGALAGLRVIDLTRVLGGPYCTQILGDHGAEIIKLEPPAGDETR
EW
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mRNA from alignment at P-wetherbeei_contig59269:208..363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59269.1.1 ID=mRNA_P-wetherbeei_contig59269.1.1|Name=mRNA_P-wetherbeei_contig59269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig59269:208..363- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCCCAATCAGCCTTCGGCGCCCTCGCGGGCTTGCGCGTGATCGA
TCTGACGCGCGTGCTCGGCGGACCTTACTGCACGCAAATTCTCGGCGACC
ACGGCGCGGAGATCATCAAGCTGGAGCCGCCCGCCGGCGACGAGACGCGC
GAATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59269:208..363-

>mRNA_P-wetherbeei_contig59269.1.1 ID=mRNA_P-wetherbeei_contig59269.1.1|Name=mRNA_P-wetherbeei_contig59269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig59269:208..363- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCCCAATCAGCCTTCGGCGCCCTCGCGGGCTTGCGCGTGATCGA
TCTGACGCGCGTGCTCGGCGGACCTTACTGCACGCAAATTCTCGGCGACC
ACGGCGCGGAGATCATCAAGCTGGAGCCGCCCGCCGGCGACGAGACGCGC
GAATGG
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