mRNA_P-wetherbeei_contig59223.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59223.1.1
Unique NamemRNA_P-wetherbeei_contig59223.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59223.1.1 vs. uniprot
Match: UPI001C3C60AE (PDZ domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C60AE)

HSP 1 Score: 96.7 bits (239), Expect = 7.590e-22
Identity = 47/70 (67.14%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   10 DRTPEALAAAQRAVGLDARYADAFLPLGISLIASGDRPGGVKALRRGLVLLEEPDRANDLIAKNLDPTDP 219
            DR  +A+  AQ+AV LD RYAD FLPLGI+L+A+GD+P GV+ LRRGL+LLEEPDRA+ LI+++LDPTDP
Sbjct:  384 DRAADAVTEAQKAVRLDPRYADGFLPLGIALLATGDKPNGVRFLRRGLLLLEEPDRASRLISEHLDPTDP 453
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BLAST of mRNA_P-wetherbeei_contig59223.1.1 vs. uniprot
Match: UPI001C3D2962 (S1C family serine protease n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D2962)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 LNADRTPEALAAAQRAVGLDARYADAFLPLGISLIASGDRPGGVKALRRGLVLLEEPDRANDLIAKNLDPTDP 219
            L  DR P+A+AAA RAV LD RYADAFLPLG++L+A G +  GV+ LRRGL+LLE+ +RA  L  ++LDPTDP
Sbjct:  381 LREDRVPDAVAAASRAVRLDNRYADAFLPLGMALLADGQKAQGVRMLRRGLLLLEDAERAARLTTEHLDPTDP 453
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59223.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C3C60AE7.590e-2267.14PDZ domain-containing protein n=1 Tax=Miltoncostae... [more]
UPI001C3D29621.190e-1861.64S1C family serine protease n=1 Tax=Miltoncostaea m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59223contigP-wetherbeei_contig59223:237..458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size222
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.388685-CDS-P-wetherbeei_contig59223:236..4581683186875.388685-CDS-P-wetherbeei_contig59223:236..458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59223 237..458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59223.1.1prot_P-wetherbeei_contig59223.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59223 237..458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59223.1.1

>prot_P-wetherbeei_contig59223.1.1 ID=prot_P-wetherbeei_contig59223.1.1|Name=mRNA_P-wetherbeei_contig59223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
LNADRTPEALAAAQRAVGLDARYADAFLPLGISLIASGDRPGGVKALRRG
LVLLEEPDRANDLIAKNLDPTDP*
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mRNA from alignment at P-wetherbeei_contig59223:237..458-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59223.1.1 ID=mRNA_P-wetherbeei_contig59223.1.1|Name=mRNA_P-wetherbeei_contig59223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig59223:237..458- (Phaeothamnion wetherbeei SAG_119_79)
CTGAACGCCGACCGCACGCCCGAGGCGCTGGCGGCGGCCCAGCGCGCGGT
GGGCCTCGACGCGCGCTACGCCGATGCCTTCCTGCCCCTCGGCATCAGCC
TCATCGCCAGCGGCGATCGCCCCGGCGGCGTCAAGGCCCTGCGACGCGGC
CTGGTGCTGCTGGAGGAGCCCGACCGCGCCAACGACCTCATCGCGAAGAA
CCTGGACCCCACCGACCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59223:237..458-

>mRNA_P-wetherbeei_contig59223.1.1 ID=mRNA_P-wetherbeei_contig59223.1.1|Name=mRNA_P-wetherbeei_contig59223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig59223:237..458- (Phaeothamnion wetherbeei SAG_119_79)
CTGAACGCCGACCGCACGCCCGAGGCGCTGGCGGCGGCCCAGCGCGCGGT
GGGCCTCGACGCGCGCTACGCCGATGCCTTCCTGCCCCTCGGCATCAGCC
TCATCGCCAGCGGCGATCGCCCCGGCGGCGTCAAGGCCCTGCGACGCGGC
CTGGTGCTGCTGGAGGAGCCCGACCGCGCCAACGACCTCATCGCGAAGAA
CCTGGACCCCACCGACCCCTGA
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