mRNA_P-wetherbeei_contig5920.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5920.1.1
Unique NamemRNA_P-wetherbeei_contig5920.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5920.1.1 vs. uniprot
Match: D7FRG1_ECTSI (DEUBAD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRG1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-10
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 ALLSDNFNSVVSGFELDASNPASMDALARGDGVEALLQALIHAAQRAQQ 147
            AL SDNFN+++S FELD SNP S +A+ARGDGVEA +QAL H+A + ++
Sbjct:   75 ALRSDNFNNIMSSFELDPSNPRSAEAMARGDGVEAFVQALAHSATQRRE 123
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BLAST of mRNA_P-wetherbeei_contig5920.1.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.240e-10
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 ALLSDNFNSVVSGFELDASNPASMDALARGDGVEALLQALIHAAQR 138
            AL SDNFNS++S F LDA+NP +M AL+RGDGV+ALL AL+HAA++
Sbjct:  265 ALQSDNFNSIMSNFGLDANNPDAMAALSRGDGVQALLSALMHAAKQ 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5920.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRG1_ECTSI1.020e-1061.22DEUBAD domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z3T3_9STRA6.240e-1067.39DNA topoisomerase n=1 Tax=Tribonema minus TaxID=30... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5920contigP-wetherbeei_contig5920:158..717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.14783-CDS-P-wetherbeei_contig5920:157..2431683186875.14783-CDS-P-wetherbeei_contig5920:157..243Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5920 158..243 +
1683186875.158801-CDS-P-wetherbeei_contig5920:631..7161683186875.158801-CDS-P-wetherbeei_contig5920:631..716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5920 632..716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5920.1.1prot_P-wetherbeei_contig5920.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5920 158..716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5920.1.1

>prot_P-wetherbeei_contig5920.1.1 ID=prot_P-wetherbeei_contig5920.1.1|Name=mRNA_P-wetherbeei_contig5920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
ALLSDNFNSVVSGFELDASNPASMDALARGDGVEALLQALIHAAQRAQQG
SGGGGES
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mRNA from alignment at P-wetherbeei_contig5920:158..717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5920.1.1 ID=mRNA_P-wetherbeei_contig5920.1.1|Name=mRNA_P-wetherbeei_contig5920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=560bp|location=Sequence derived from alignment at P-wetherbeei_contig5920:158..717+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTTGCTTTCCGACAACTTCAACTCGGTCGTCAGCGGGTTTGAGCTGGA
CGCGTCCAATCCGGCATCGATGGACGCACTCGCAAGGCGCGTGTAGCCAG
CAATATGCTCGGTGCTGGTAGCGACGGCGGCGGCTGAATGGCGGTGGCAG
CAGTGGGATGGCATGTCGCGGCAATTGCAGCATTGTTTGGCAGTGGTTTT
TAGGCGGCGGTCGATATGCCTCCGGCGGTACTGAGCGACGGCTTTCGCGG
TTGGCTGCGAGGCTGAGAGGCGAAGCGGGTTTCGGGCGAAGGCGAAGGGA
GAAAGCAGCAGAAGTGTGACAAGAGATTCGGGGGTACATCTCCCTTTCCG
CCGCTTGCGTTGCTTCTTCGCGCCCGTCCTGTTTCGGGCAAGGAGCGCTG
CGCTGGTGCGCCGGCGCATTGCTTTGACTCATTCTTCTCCTTCTTCCCAC
TGCTTTCGCTCGACGTCATGGCAGGGGCGACGGCGTGGAAGCACTGCTTC
AGGCGCTCATCCACGCTGCACAGCGGGCGCAGCAGGGCAGTGGCGGCGGC
GGCGAGAGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5920:158..717+

>mRNA_P-wetherbeei_contig5920.1.1 ID=mRNA_P-wetherbeei_contig5920.1.1|Name=mRNA_P-wetherbeei_contig5920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig5920:158..717+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTTGCTTTCCGACAACTTCAACTCGGTCGTCAGCGGGTTTGAGCTGGA
CGCGTCCAATCCGGCATCGATGGACGCACTCGCAAGGGGCGACGGCGTGG
AAGCACTGCTTCAGGCGCTCATCCACGCTGCACAGCGGGCGCAGCAGGGC
AGTGGCGGCGGCGGCGAGAGT
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