mRNA_P-wetherbeei_contig59172.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59172.1.1
Unique NamemRNA_P-wetherbeei_contig59172.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59172.1.1 vs. uniprot
Match: UPI001FFAC69F (CHAT domain-containing protein n=1 Tax=Bradyrhizobium sp. 164 TaxID=2782637 RepID=UPI001FFAC69F)

HSP 1 Score: 90.1 bits (222), Expect = 4.040e-18
Identity = 64/168 (38.10%), Postives = 84/168 (50.00%), Query Frame = 1 
Query:   34 LRRMSDQLFELSIECFRTKMIVTGNVISETAKHRIQSVLVRYCTPKG---IRLANRLEVTAPFHPAEDNEYERPVSR----------------------RIAMDSAF--VPPPSEPPVGIVVDRYPAIRSDQLPVEGANFHFEVDLKAEPDPTTDAEPVSFKDVPSNW 456
            L  + D  FE+ I   + +++V G+V S T +  +  +L R C  +    IR+ + LEVTAPF PA D + ER   +                      RIAMDS      P S     + VDRYP+I S++ PV G  F FEV L A PD   DAEP+SFKDVP  W
Sbjct:   51 LENVKDGFFEVVIRWTKPRLLVEGSVASGTVRRNVVDIL-RRCVGEARRRIRVIDELEVTAPFRPAHDGDLERYEIKATGNVVINGAGNVVGAGKDDGPRIAMDSVGERTRPSSS---NLDVDRYPSISSEEQPVAGQIFRFEVALNATPD-APDAEPISFKDVPGEW 213
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BLAST of mRNA_P-wetherbeei_contig59172.1.1 vs. uniprot
Match: UPI001BCF89B9 (CHAT domain-containing protein n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCF89B9)

HSP 1 Score: 86.7 bits (213), Expect = 6.500e-17
Identity = 57/165 (34.55%), Postives = 84/165 (50.91%), Query Frame = 1 
Query:   34 LRRMSDQLFELSIECFRTKMIVTGNVISETAKHRIQSVLVRYCTPKG----IRLANRLEVTAPFHPAEDNEYERPVSRRIAMDSA--------------------FVPPPSEPPVGIVVDRYPAIRSDQLPVEGANFHFEVDLKAEPDPTTDAEPVSFKDVPSNW 456
            L+ +    FE+ I   +T++ V G+V S T +  +  +L R C  +G    +++ + LEVTAPF PA +++ ER   R  A D+                      +  P  P +   VDRYP+I SD+ P+ G  F FEV L A PD +   EPVSFK+VP +W
Sbjct:   30 LKELQSGFFEVVIRFTKTRLTVEGSVASGTTRRAVVDIL-RRCVAEGRRPLLKVVDDLEVTAPFRPAHESDLERYEIRGAAKDAVGXXXXXXXXXXXXXXMAKDGAIAKPKAPTID--VDRYPSISSDEQPIVGQVFRFEVALNATPDASA-TEPVSFKNVPGDW 190
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BLAST of mRNA_P-wetherbeei_contig59172.1.1 vs. uniprot
Match: UPI001BA62A1B (CHAT domain-containing protein n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BA62A1B)

HSP 1 Score: 69.3 bits (168), Expect = 7.070e-11
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 1 
Query:   13 WFETIGSLRRMSDQLFELSIECFRTKMI-VTGNVISETAKHRIQSVLVRYCTPKGIRLANRLEVTAPFHPAEDNEYERPVSRRIAMDSAFVPPPSEPPVGIVVDRYPAIRSDQLPVEGANFHFEVDLKAEPDPTTDAEPVSFKDVPSNW 456
            W      L R+ D +F++ +      +I V GNV SE  K     +L  +  PK  R+AN LEVTAPF  AED+++   +   +++     P P+ P     V+RYP  +S + PV G  F FEVDL       +D   + F D+P +W
Sbjct:   35 WRRASEKLVRLQDFVFDVKVARRGYDLITVEGNVASEQVKRLFSEILTDF-DPKA-RIANDLEVTAPFRSAEDDDFTIELKGNLSIAG---PAPTVP-----VERYPLFKSGETPVMGRRFRFEVDLSTA---ASDYPLIRF-DLPPDW 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59172.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001FFAC69F4.040e-1838.10CHAT domain-containing protein n=1 Tax=Bradyrhizob... [more]
UPI001BCF89B96.500e-1734.55CHAT domain-containing protein n=1 Tax=Bradyrhizob... [more]
UPI001BA62A1B7.070e-1134.23CHAT domain-containing protein n=1 Tax=Bradyrhizob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59172contigP-wetherbeei_contig59172:45..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.7880926-CDS-P-wetherbeei_contig59172:44..5001683186874.7880926-CDS-P-wetherbeei_contig59172:44..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59172 45..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59172.1.1prot_P-wetherbeei_contig59172.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59172 45..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59172.1.1

>prot_P-wetherbeei_contig59172.1.1 ID=prot_P-wetherbeei_contig59172.1.1|Name=mRNA_P-wetherbeei_contig59172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MDPSWFETIGSLRRMSDQLFELSIECFRTKMIVTGNVISETAKHRIQSVL
VRYCTPKGIRLANRLEVTAPFHPAEDNEYERPVSRRIAMDSAFVPPPSEP
PVGIVVDRYPAIRSDQLPVEGANFHFEVDLKAEPDPTTDAEPVSFKDVPS
NW
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mRNA from alignment at P-wetherbeei_contig59172:45..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59172.1.1 ID=mRNA_P-wetherbeei_contig59172.1.1|Name=mRNA_P-wetherbeei_contig59172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig59172:45..500+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCCGTCTTGGTTCGAGACGATCGGATCTCTCAGAAGGATGAGCGA
TCAGCTATTCGAGTTGAGCATCGAGTGCTTCCGGACGAAGATGATCGTGA
CCGGCAACGTCATCAGCGAAACGGCGAAGCACCGGATACAGTCCGTCCTC
GTCCGGTATTGCACGCCGAAGGGGATCAGGCTCGCGAACAGGTTGGAGGT
CACGGCTCCTTTCCACCCGGCCGAGGACAACGAATACGAACGCCCCGTTT
CACGTCGTATCGCGATGGACTCGGCGTTCGTCCCCCCTCCGTCCGAGCCG
CCGGTGGGCATTGTTGTCGATCGCTACCCGGCGATCCGATCGGATCAACT
ACCGGTGGAAGGCGCAAACTTCCACTTCGAGGTCGACCTGAAAGCGGAGC
CTGACCCTACGACGGATGCGGAGCCGGTCTCCTTCAAGGACGTGCCCAGC
AATTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59172:45..500+

>mRNA_P-wetherbeei_contig59172.1.1 ID=mRNA_P-wetherbeei_contig59172.1.1|Name=mRNA_P-wetherbeei_contig59172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig59172:45..500+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCCGTCTTGGTTCGAGACGATCGGATCTCTCAGAAGGATGAGCGA
TCAGCTATTCGAGTTGAGCATCGAGTGCTTCCGGACGAAGATGATCGTGA
CCGGCAACGTCATCAGCGAAACGGCGAAGCACCGGATACAGTCCGTCCTC
GTCCGGTATTGCACGCCGAAGGGGATCAGGCTCGCGAACAGGTTGGAGGT
CACGGCTCCTTTCCACCCGGCCGAGGACAACGAATACGAACGCCCCGTTT
CACGTCGTATCGCGATGGACTCGGCGTTCGTCCCCCCTCCGTCCGAGCCG
CCGGTGGGCATTGTTGTCGATCGCTACCCGGCGATCCGATCGGATCAACT
ACCGGTGGAAGGCGCAAACTTCCACTTCGAGGTCGACCTGAAAGCGGAGC
CTGACCCTACGACGGATGCGGAGCCGGTCTCCTTCAAGGACGTGCCCAGC
AATTGG
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