mRNA_P-wetherbeei_contig59170.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59170.1.1
Unique NamemRNA_P-wetherbeei_contig59170.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59170.1.1 vs. uniprot
Match: A0A371B0Z4_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B0Z4_9HYPH)

HSP 1 Score: 89.4 bits (220), Expect = 4.570e-22
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 MQLHCHQPKNSSMRAFAEPTRCPSCGDWMVAPISSEFVEGGEIRHHWECDACGDACSTSIPLE 189
            MQLHC+    SS+RAF  P  C +CGD ++AP++S FVEGGEIRH+WEC+ACG   S+SI L+
Sbjct:    1 MQLHCYPATLSSIRAFGAPLICAACGDRLIAPMASAFVEGGEIRHYWECEACGATSSSSIALD 63
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BLAST of mRNA_P-wetherbeei_contig59170.1.1 vs. uniprot
Match: UPI0010BED635 (hypothetical protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BED635)

HSP 1 Score: 84.3 bits (207), Expect = 4.500e-20
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 MQLHCHQPKNSSMRAFAEPTRCPSCGDWMVAPISSEFVEGGEIRHHWECDACGDACSTSIPLE 189
            MQL+C+    SS+R F  P  C SCGD ++AP +S FVEGGEIRH+WEC++CG   S+SI L+
Sbjct:    1 MQLNCYPATLSSIRVFGAPFVCASCGDQLIAPTASAFVEGGEIRHYWECESCGATSSSSIALD 63
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BLAST of mRNA_P-wetherbeei_contig59170.1.1 vs. uniprot
Match: A0A0Q7TLY4_9HYPH (Uncharacterized protein n=2 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TLY4_9HYPH)

HSP 1 Score: 73.6 bits (179), Expect = 6.140e-16
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   37 MRAFAEPTRCPSCGDWMVAPISSEFVEGGEIRHHWECDACGDACSTSIPLEVCA 198
            +R F    RC  CG+ ++AP++SEFV+GGEIRH WECD+CG    TSI ++  A
Sbjct:    2 IRIFGTALRCTDCGNQLIAPVASEFVDGGEIRHFWECDSCGTTSCTSIDIDTLA 55
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BLAST of mRNA_P-wetherbeei_contig59170.1.1 vs. uniprot
Match: A0A212Q552_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes sp. JGI PP 4-B12 TaxID=1873883 RepID=A0A212Q552_9HYPH)

HSP 1 Score: 50.8 bits (120), Expect = 7.840e-7
Identity = 19/60 (31.67%), Postives = 32/60 (53.33%), Query Frame = 1 
Query:    1 MQLHCHQPKNSSMRAFAEPTRCPSCGDWMVAPISSEFVEGGEIRHHWECDACGDACSTSI 180
            M LH      + +  +++   CP CG+W++AP  SE++    +RH W C  CG    T++
Sbjct:    1 MALHAETAARTRLATYSK-NHCPQCGEWLLAPDWSEYLNERCVRHTWSCQDCGYQFETAV 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A371B0Z4_9HYPH4.570e-2258.73Uncharacterized protein n=1 Tax=Pseudolabrys sp. G... [more]
UPI0010BED6354.500e-2055.56hypothetical protein n=1 Tax=Pseudolabrys sp. FHR4... [more]
A0A0Q7TLY4_9HYPH6.140e-1651.85Uncharacterized protein n=2 Tax=Pseudolabrys sp. R... [more]
A0A212Q552_9HYPH7.840e-731.67Uncharacterized protein n=1 Tax=Rhodoplanes sp. JG... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59170contigP-wetherbeei_contig59170:54..254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size201
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.7490644-CDS-P-wetherbeei_contig59170:53..2541683186874.7490644-CDS-P-wetherbeei_contig59170:53..254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59170 54..254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59170.1.1prot_P-wetherbeei_contig59170.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59170 54..254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59170.1.1

>prot_P-wetherbeei_contig59170.1.1 ID=prot_P-wetherbeei_contig59170.1.1|Name=mRNA_P-wetherbeei_contig59170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MQLHCHQPKNSSMRAFAEPTRCPSCGDWMVAPISSEFVEGGEIRHHWECD
ACGDACSTSIPLEVCA*
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mRNA from alignment at P-wetherbeei_contig59170:54..254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59170.1.1 ID=mRNA_P-wetherbeei_contig59170.1.1|Name=mRNA_P-wetherbeei_contig59170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig59170:54..254+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTTCACTGCCATCAGCCGAAGAACTCTTCGATGCGCGCCTTTGC
CGAGCCGACGCGCTGCCCGTCCTGCGGCGACTGGATGGTCGCTCCAATCT
CCTCCGAATTCGTCGAAGGCGGCGAGATCCGCCATCATTGGGAATGCGAC
GCCTGCGGCGACGCGTGCTCCACGTCGATCCCGCTCGAAGTCTGCGCGTA
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59170:54..254+

>mRNA_P-wetherbeei_contig59170.1.1 ID=mRNA_P-wetherbeei_contig59170.1.1|Name=mRNA_P-wetherbeei_contig59170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig59170:54..254+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTTCACTGCCATCAGCCGAAGAACTCTTCGATGCGCGCCTTTGC
CGAGCCGACGCGCTGCCCGTCCTGCGGCGACTGGATGGTCGCTCCAATCT
CCTCCGAATTCGTCGAAGGCGGCGAGATCCGCCATCATTGGGAATGCGAC
GCCTGCGGCGACGCGTGCTCCACGTCGATCCCGCTCGAAGTCTGCGCGTA
A
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