mRNA_P-wetherbeei_contig59158.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59158.1.1
Unique NamemRNA_P-wetherbeei_contig59158.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59158.1.1 vs. uniprot
Match: UPI001BA71F63 (hypothetical protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0177 TaxID=2807665 RepID=UPI001BA71F63)

HSP 1 Score: 227 bits (579), Expect = 1.940e-70
Identity = 120/161 (74.53%), Postives = 129/161 (80.12%), Query Frame = 1 
Query:    4 ADRVLAERFGKLVQFLSEGLLVAAGAPKGGGESISIPRSIWQRDRTYIDLENGDLLEMDPRAEDETTALSRPIFTGLMLFRPGGAFDVPENPKPDT-HPAPTPAKTVAARGIITKTTSQAACRVWLCDQMRVSLDRRPKPKEEYWQEAQKNWPGTLSKRAF 483
            ADRVLA RFGKL+QFLS+G LVA G PKGGG SI IPR IWQRDRTYIDLENGDLLE+D RAED TTALS PIFTGLMLF+P GA  +PE+PK +   PA T    VA R IITKTTSQAAC  WL + MR S DRRPKPK EYWQ+AQKNWP TLSKRAF
Sbjct:  233 ADRVLAVRFGKLMQFLSDGRLVAEGIPKGGGGSIPIPRLIWQRDRTYIDLENGDLLEIDQRAEDGTTALSSPIFTGLMLFKPDGASRIPESPKVNVLFPARTQEVAVATREIITKTTSQAACHRWLWEHMRASPDRRPKPKGEYWQDAQKNWPRTLSKRAF 393
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BLAST of mRNA_P-wetherbeei_contig59158.1.1 vs. uniprot
Match: A0A7G6U3R6_9BRAD (Uncharacterized protein n=1 Tax=Tardiphaga robiniae TaxID=943830 RepID=A0A7G6U3R6_9BRAD)

HSP 1 Score: 162 bits (411), Expect = 4.220e-47
Identity = 83/161 (51.55%), Postives = 109/161 (67.70%), Query Frame = 1 
Query:    1 AADRVLAERFGKLVQFLSEGLLVAAGAPKGGGESISIPRSIWQRDRTYIDLENGDLLEMDPRAEDETTALSRPIFTGLMLFRPGGAFDVPENPKPDTHPAPTPAKTVAARGIITKTTSQAACRVWLCDQMRVSLDRRPKPKEEYWQEAQKNWPGTLSKRAF 483
            AA RV+  RF  ++ FLS G +VA G P+GGG ++++PRS+WQR  T+IDLENGD++EM+  A+D TTALS+PIFTGLML RP          K    P  T +    A  IITKTTS+ AC++WLC  M  S  +RPK K E+WQEA+  WP +L++RAF
Sbjct:   68 AAARVVGRRFAAMMSFLSAGHIVAEGIPRGGGAAVAVPRSLWQRSETHIDLENGDIIEMNRHADDHTTALSKPIFTGLMLQRPAAPSLPSVVQKQTLTPETTASFDNKAAAIITKTTSRDACKLWLCRLMTESPVQRPKAKREFWQEARSKWPNSLAERAF 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59158.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001BA71F631.940e-7074.53hypothetical protein n=1 Tax=Bradyrhizobium sp. AU... [more]
A0A7G6U3R6_9BRAD4.220e-4751.55Uncharacterized protein n=1 Tax=Tardiphaga robinia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59158contigP-wetherbeei_contig59158:3..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size483
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.6550226-CDS-P-wetherbeei_contig59158:2..4851683186874.6550226-CDS-P-wetherbeei_contig59158:2..485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59158 3..485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59158.1.1prot_P-wetherbeei_contig59158.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59158 3..485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59158.1.1

>prot_P-wetherbeei_contig59158.1.1 ID=prot_P-wetherbeei_contig59158.1.1|Name=mRNA_P-wetherbeei_contig59158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
AADRVLAERFGKLVQFLSEGLLVAAGAPKGGGESISIPRSIWQRDRTYID
LENGDLLEMDPRAEDETTALSRPIFTGLMLFRPGGAFDVPENPKPDTHPA
PTPAKTVAARGIITKTTSQAACRVWLCDQMRVSLDRRPKPKEEYWQEAQK
NWPGTLSKRAF
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mRNA from alignment at P-wetherbeei_contig59158:3..485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59158.1.1 ID=mRNA_P-wetherbeei_contig59158.1.1|Name=mRNA_P-wetherbeei_contig59158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig59158:3..485+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGACCGAGTACTGGCGGAACGATTTGGAAAGTTAGTGCAGTTTCT
TTCGGAAGGACTCCTTGTTGCAGCAGGTGCTCCAAAAGGCGGAGGCGAAA
GCATTTCAATTCCACGGTCAATCTGGCAGCGCGATCGGACCTATATTGAC
CTGGAGAACGGGGATCTTTTGGAAATGGACCCGCGAGCCGAGGACGAAAC
GACCGCACTATCGCGCCCGATCTTTACCGGATTGATGTTGTTCAGGCCTG
GCGGAGCGTTTGACGTTCCCGAAAACCCCAAGCCCGATACCCATCCCGCA
CCTACTCCGGCAAAGACGGTCGCCGCTCGTGGGATCATCACCAAGACCAC
CAGCCAAGCCGCATGTCGTGTGTGGCTTTGCGACCAGATGCGGGTATCCC
TTGATAGGAGACCAAAGCCAAAAGAGGAATATTGGCAGGAAGCGCAGAAA
AACTGGCCGGGAACACTGTCGAAACGTGCGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59158:3..485+

>mRNA_P-wetherbeei_contig59158.1.1 ID=mRNA_P-wetherbeei_contig59158.1.1|Name=mRNA_P-wetherbeei_contig59158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig59158:3..485+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGACCGAGTACTGGCGGAACGATTTGGAAAGTTAGTGCAGTTTCT
TTCGGAAGGACTCCTTGTTGCAGCAGGTGCTCCAAAAGGCGGAGGCGAAA
GCATTTCAATTCCACGGTCAATCTGGCAGCGCGATCGGACCTATATTGAC
CTGGAGAACGGGGATCTTTTGGAAATGGACCCGCGAGCCGAGGACGAAAC
GACCGCACTATCGCGCCCGATCTTTACCGGATTGATGTTGTTCAGGCCTG
GCGGAGCGTTTGACGTTCCCGAAAACCCCAAGCCCGATACCCATCCCGCA
CCTACTCCGGCAAAGACGGTCGCCGCTCGTGGGATCATCACCAAGACCAC
CAGCCAAGCCGCATGTCGTGTGTGGCTTTGCGACCAGATGCGGGTATCCC
TTGATAGGAGACCAAAGCCAAAAGAGGAATATTGGCAGGAAGCGCAGAAA
AACTGGCCGGGAACACTGTCGAAACGTGCGTTC
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