mRNA_P-wetherbeei_contig5915.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5915.1.1
Unique NamemRNA_P-wetherbeei_contig5915.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: D0MQR7_PHYIT (DOT1 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MQR7_PHYIT)

HSP 1 Score: 187 bits (474), Expect = 6.180e-55
Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ MK+ C L  +S F+DVGSGLGKPNFH   DPG Q+SYG+ELEE+RW LS+HNLR+VL  D+      + K PL     +F   DIT A +F+PF+HVY+FDVGFPP  + +MA MFN S A+Y  ++H P++ VD  GF VE V ++ TS+ G
Sbjct:   96 GAIYGEITQASFQRVVDYMKEKCELSKSSRFIDVGSGLGKPNFHVAVDPGVQVSYGIELEELRWHLSLHNLRSVLSLDS------QRKKPLA---TVFTAGDITHAHSFEPFSHVYSFDVGFPPDVMDKMADMFNRSSAKYFASFHAPRKVVDMYGFSVENVGRVATSMAG 257          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: D7FSQ9_ECTSI (DOT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ9_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 8.680e-55
Identity = 98/171 (57.31%), Postives = 118/171 (69.01%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGELT+  MQKVVN +K+  G D  S+F+DVG+GLGKPNFH   DPG +ISYG+ELE VRW LSI N R VL  +   G        + +HN+ FAR DI    TFDPFTHVY FD+GFPPATL  +A  FN S AR+L++Y  PK+ +D  GFDV+LV Q   SLTG
Sbjct:  217 GAIYGELTVGGMQKVVNVLKEHTGFDEMSSFIDVGAGLGKPNFHVAQDPGVEISYGLELEVVRWELSIANHRMVLQDEGDNGVH------VAKHNLFFARGDILGCETFDPFTHVYMFDIGFPPATLHEIAKKFNNSKARHLVSYQVPKKVIDVYGFDVDLVLQQPLSLTG 381          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: A0A8K1CIK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIK2_PYTOL)

HSP 1 Score: 188 bits (477), Expect = 8.660e-54
Identity = 91/171 (53.22%), Postives = 117/171 (68.42%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ +K+ C L  AS FLDVGSGLGKPN H   DPG ++SYGVELEE+RW LS+HNLR+VL  D             + +  IF   DITDA TF+PF+HVY+FDVGFPP  +  MA MFN S ARY I++H P++ ++  GF VE + ++ TS+ G
Sbjct:  135 GAIYGEITQSSFQRVVDYLKENCELSEASLFLDVGSGLGKPNMHVAIDPGVEVSYGVELEELRWHLSLHNLRSVLQLDVNKS---------KPNRTIFTAGDITDAQTFNPFSHVYSFDVGFPPDVMAHMATMFNRSEARYFISFHSPRKVIESYGFHVENIGRVATSMAG 296          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: D0P3N8_PHYIT (DOT1 domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0P3N8_PHYIT)

HSP 1 Score: 186 bits (472), Expect = 1.790e-53
Identity = 91/171 (53.22%), Postives = 120/171 (70.18%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ MK+ C L  +S F+DVGSGLGKPNFH   DPG Q+SYG+ELEE+RW LS+HNLR+VL  D+      + K PL     +F   DIT A +F+PF+HVY+FDVGFPP  + +MA MFN S A+Y  ++H P++ VD  GF VE + ++ TS+ G
Sbjct:   96 GAIYGEITQASFQRVVDYMKEKCELSKSSRFIDVGSGLGKPNFHVAVDPGVQVSYGIELEELRWHLSLHNLRSVLSLDS------QRKKPLA---TVFTAGDITHAHSFEPFSHVYSFDVGFPPDVMDKMADMFNRSSAKYFASFHVPRKVVDMYGFSVENIGRVATSMAG 257          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: H3GBN8_PHYRM (DOT1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBN8_PHYRM)

HSP 1 Score: 187 bits (474), Expect = 2.250e-53
Identity = 91/171 (53.22%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ +K+ C L +AS FLDVGSGLGKPNFH   DPG Q+SYG+ELEE+RW LS+HNLR+VL  D    S++ ++        +F   DITDA T +PF+HVY+FDVGFPP  + +MA MFN S A+Y  ++H P++ VD  GF VE + ++ TS+ G
Sbjct:  127 GAIYGEITQASFQRVVDYLKEHCELSSASRFLDVGSGLGKPNFHVAVDPGVQVSYGIELEELRWHLSLHNLRSVLSLD----SQRDKRLA-----TVFTAGDITDAHTLNPFSHVYSFDVGFPPDVMDKMAEMFNRSSAKYFASFHAPRKVVDNYGFSVENIGRVATSMAG 288          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: M4B4B3_HYAAE (DOT1 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4B3_HYAAE)

HSP 1 Score: 186 bits (472), Expect = 4.060e-53
Identity = 90/171 (52.63%), Postives = 120/171 (70.18%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ +KD C L  +S F+DVGSGLGKPNFH   DPG Q+SYG+ELEE+RW LS+HNLR+VL  D+      +   PL   + +F   DIT A TF+PF+HVYTFDVGFPP  + +MA MFN S A+Y +++H P++ V+  GF V  + ++ TS+ G
Sbjct:  125 GAIYGEITQASFQRVVDYLKDNCELSESSCFVDVGSGLGKPNFHVSVDPGVQVSYGIELEELRWHLSLHNLRSVLSLDS------QRHKPL---STVFTAGDITHAHTFEPFSHVYTFDVGFPPDVMDKMAEMFNRSSAKYFVSFHSPRKVVETYGFSVTNIGRVATSMAG 286          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: A0A3M6VBW5_9STRA (DOT1 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VBW5_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.110e-53
Identity = 90/175 (51.43%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHN----VIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ +KD C L   S F+DVGSGLGKPNFH   DPG Q+SYG+ELEE+RW LS+HNLR+VL  D+             QH+     +F   DIT A TF+PF+HVY+FDVGFPP  + +MA MFN S  +Y +++H P++ VD  GF VE + ++ TS+ G
Sbjct:   33 GAIYGEITQSSFQRVVDYLKDNCELTTTSCFVDVGSGLGKPNFHVSVDPGVQVSYGIELEELRWHLSLHNLRSVLSLDS-------------QHHKHLSTVFTVGDITHAHTFEPFSHVYSFDVGFPPDVMHKMADMFNRSSGKYFVSFHSPRKVVDAYGFSVENIGRVATSMAG 194          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: A0A0P1A7P9_PLAHL (DOT1 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7P9_PLAHL)

HSP 1 Score: 184 bits (468), Expect = 6.730e-53
Identity = 89/171 (52.05%), Postives = 118/171 (69.01%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ +K+ C L  +S F+DVGSGLGKPNFH   DPG Q+SYG+ELEE+RW LS+HNLR+VL           E   L+  + +F   DIT A TF+PF+HVY+FDVGFPP  + +MA MFN S A+Y  ++H P++ VD  GF VE + ++ TS+ G
Sbjct:   96 GAIYGEITQASFQRVVDYLKEFCELSESSRFIDVGSGLGKPNFHVAVDPGVQLSYGIELEELRWHLSLHNLRSVL---------SLESQRLKPVSTVFTAGDITHAHTFEPFSHVYSFDVGFPPDVMDKMALMFNRSSAKYYASFHAPRKVVDMYGFAVENIGRVATSMAG 257          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: G4ZQK7_PHYSP (DOT1 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZQK7_PHYSP)

HSP 1 Score: 185 bits (470), Expect = 7.670e-53
Identity = 91/171 (53.22%), Postives = 120/171 (70.18%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ +K+ C L  +S FLDVGSGLGKPNFH   DPG ++SYG+ELEE+RW LS+HNLR+VL  D+     +K K        +F   DIT A TF+PF+HVY+FDVGFPP  + +MA MFN S ARY +++H P++ VD  GF VE + ++ TS+ G
Sbjct:  123 GAIYGEITQASFQRVVDYLKENCELSTSSRFLDVGSGLGKPNFHVAVDPGVEVSYGIELEELRWHLSLHNLRSVLSLDS-----QKNKCLA----TVFTAGDITHAHTFEPFSHVYSFDVGFPPDVMDKMADMFNRSTARYFVSFHSPRKVVDAYGFSVENIGRVATSMAG 284          
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Match: A0A225X3E7_9STRA (DOT1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225X3E7_9STRA)

HSP 1 Score: 182 bits (463), Expect = 7.290e-52
Identity = 89/171 (52.05%), Postives = 119/171 (69.59%), Query Frame = 1
Query:    1 GAIYGELTMKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFH---DPGCQISYGVELEEVRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDPFTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVELVAQMHTSLTG 504
            GAIYGE+T  S Q+VV+ +K+ C L   S FLDVGSGLGKPNFH   DPG Q+SYG+ELEE+RW LS+HNLR+VL  D+      +   PL   + +F   DIT A TF+PF+HVY+FDVGFPP  + +MA MFN S A+Y  ++H P++ V+  GF VE + ++ T++ G
Sbjct:  122 GAIYGEITQASFQRVVDYLKEKCELSKTSRFLDVGSGLGKPNFHVSVDPGVQVSYGIELEELRWHLSLHNLRSVLSLDS------QRNKPL---STVFTAGDITHAHTFEPFSHVYSFDVGFPPDVMDKMADMFNRSSAKYFASFHAPRKVVETYGFAVENIGRVATNMAG 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5915.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D0MQR7_PHYIT6.180e-5553.80DOT1 domain-containing protein n=1 Tax=Phytophthor... [more]
D7FSQ9_ECTSI8.680e-5557.31DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8K1CIK2_PYTOL8.660e-5453.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0P3N8_PHYIT1.790e-5353.22DOT1 domain-containing protein n=14 Tax=Phytophtho... [more]
H3GBN8_PHYRM2.250e-5353.22DOT1 domain-containing protein n=1 Tax=Phytophthor... [more]
M4B4B3_HYAAE4.060e-5352.63DOT1 domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A3M6VBW5_9STRA4.110e-5351.43DOT1 domain-containing protein n=1 Tax=Peronospora... [more]
A0A0P1A7P9_PLAHL6.730e-5352.05DOT1 domain-containing protein n=1 Tax=Plasmopara ... [more]
G4ZQK7_PHYSP7.670e-5353.22DOT1 domain-containing protein n=5 Tax=Phytophthor... [more]
A0A225X3E7_9STRA7.290e-5252.05DOT1 domain-containing protein n=2 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5915contigP-wetherbeei_contig5915:306..2236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSQ9
PFAMsDOT1
Model size757
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue6.76e-51
EggNOG OGs2AVA3@1|root,2RZVU@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-03_002870.1
DescriptionHistone methylation protein DOT1
Cds size489
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5915.1.1prot_P-wetherbeei_contig5915.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5915 330..1759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.5031936-UTR-P-wetherbeei_contig5915:305..3291683186874.5031936-UTR-P-wetherbeei_contig5915:305..329Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5915 306..329 +
1683186874.5562553-UTR-P-wetherbeei_contig5915:1759..17671683186874.5562553-UTR-P-wetherbeei_contig5915:1759..1767Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5915 1760..1767 +
1683186874.56658-UTR-P-wetherbeei_contig5915:1946..20141683186874.56658-UTR-P-wetherbeei_contig5915:1946..2014Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5915 1947..2014 +
1683186874.5764608-UTR-P-wetherbeei_contig5915:2068..22361683186874.5764608-UTR-P-wetherbeei_contig5915:2068..2236Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5915 2069..2236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.514698-CDS-P-wetherbeei_contig5915:329..4371683186874.514698-CDS-P-wetherbeei_contig5915:329..437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5915 330..437 +
1683186874.5248137-CDS-P-wetherbeei_contig5915:725..8341683186874.5248137-CDS-P-wetherbeei_contig5915:725..834Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5915 726..834 +
1683186874.5351627-CDS-P-wetherbeei_contig5915:1206..12761683186874.5351627-CDS-P-wetherbeei_contig5915:1206..1276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5915 1207..1276 +
1683186874.5456662-CDS-P-wetherbeei_contig5915:1557..17591683186874.5456662-CDS-P-wetherbeei_contig5915:1557..1759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5915 1558..1759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5915.1.1

>prot_P-wetherbeei_contig5915.1.1 ID=prot_P-wetherbeei_contig5915.1.1|Name=mRNA_P-wetherbeei_contig5915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MKSMQKVVNCMKDLCGLDAASAFLDVGSGLGKPNFHDPGCQISYGVELEE
VRWRLSIHNLRAVLYADAGTGSEKKEKAPLRQHNVIFARADITDASTFDP
FTHVYTFDVGFPPATLGRMAAMFNASGARYLINYHPPKQTVDRDGFDVEL
VAQMHTSLTGKQ*
back to top

mRNA from alignment at P-wetherbeei_contig5915:306..2236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5915.1.1 ID=mRNA_P-wetherbeei_contig5915.1.1|Name=mRNA_P-wetherbeei_contig5915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1931bp|location=Sequence derived from alignment at P-wetherbeei_contig5915:306..2236+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGCGATCTACGGGGAGCTAACGATGAAGAGCATGCAGAAAGTCGTGAA CTGCATGAAAGACCTCTGCGGTCTCGACGCCGCCAGCGCCTTCCTTGACG TCGGCAGCGGCCTCGGGAAGCCCAATTTTCACGTCGCACAGGCATGAGTG TGCTGTCCGCTGCCCCGATTGCGTTGTCTTGCTTTCTGCTTCATTCAGTT TGTTTCCCGGCCACGGGCTATCTTCCTGATGTTTATCTTTCACGTGTTCG CCCTTGCAACCAGGGATAGTTACATTCATACGCTTCTATTTGTGCAGCAC ATTCTTTGGCTTGGTCGAATCAACCAACGACTGCATCTCTTCTCTTCCTC CTACCTGAACTGCTTGCATCGCATCACCACGGCGTAAAATCACGGCGAAT GCCGGTCTGCCGGCCCGCAGGACCCTGGCTGCCAGATCTCGTACGGCGTA GAGCTCGAGGAGGTGCGCTGGCGTCTCTCCATCCACAATCTCCGCGCGGT GCTGTATGCGGACGCAGGCACTGGCAGCGGTGGCGCCGGCGGCGGTGGCG ACAGCGGGCGCAGAAGCAGCAGGGGTGGCCCCGCCTCGGCAGCCGCGGCT GGAAACGCAGCCCATGCCGGCTCGGAAGGAGTGCCCTCCCCCTCGGCAGA CTCAGCAGCAGCAGCGCCGAAGGATGTTGCCATGGCCGCGGCCGCATTTT CAGCAGCTCTTCCAGCAGCCATCCCGGCTGGTGCCGCGGCCGCAGAGAGC GACAGCCTGGTCTCCTCGTCGGTGGCGTTGAGCCAAGAGGTTTCTGCGCC GCCGCGAGGGAAGACGGCGCCACCCAAGATTTCGCACAAGAAGAAGCGCC AGACGCCGGCCGCCGCGGCGGCGGCGGCCGTGGCGACAAAAGAGGTGAAA GAGAAGAAGGAAAAGGCGCCGCTGCGGCAGCACAATGTCATCTTCGCCCG CGCCGACATCACCGATGCTAGGTGCGGCATTTTTCTGTAGTCTACGGTTC AGCTGAGGGACCAGGAGAGTCGGTGAATGTCAGAACCTAACAGGAGAAGA AGACCTTGAGGAGAGGCTCTTTGCAGGCCTGCGCTCCACCCCGTCTGCTG GGCCTCCCAATTTTCGTCTGCCGGCCACTTCCGGTCTGATCGGCTGCCCT TCCTTCTGCCGCCCCGGATAACCTGGTTTCCTTCCCTCTTTCTCACGTTT GGCAACGAGAAACTACAACGGTTGCTATCGCCTGCCGGCAACGCCCGCGC AGCACCTTCGACCCGTTCACGCACGTCTACACGTTTGACGTCGGGTTCCC CCCAGCAACTCTGGGGCGGATGGCAGCAATGTTCAACGCGTCGGGCGCGC GCTACCTGATCAACTACCATCCGCCAAAGCAGACGGTCGACCGCGACGGT TTCGATGTGGAGCTCGTTGCGCAGATGCACACCAGCCTCACAGGCAAGCA ATAGGAGGGAGGGTTGAACTCGCTTTGGTTTGCCTGGGTTGAAGAAGCTC CTTACAAATCGTGATTCGGAACAATTATAGCCTCGAGGTTTCTTCCACTC ATCCTCTTACATTTTGGGGGGAAGTCTTGGCGTACATTTACTGCCCAAAT CCTTCCTTCTTCCCGGGACGGCGTCTTTTGTTTGGCGGCAGGCTCGGGCG AGAGTCATCAAGTCTACTTTTACCGCCGCCGCGGGGTACCACCGGCGCCC AAGGCGGCGGTGGCCGAGGCGGCGGCTGACCAGCCGGCGGCAGCAGCACC GACGGCGGGGCAGCCGGCGCCGGCGCCGCGCATCGCCTGGGTGGACCCGC TCTTCCGCACGGGGGTTGAGCTCTGTCAGCACGCGGCTGAGGACGGCGGC AGCGCGCTCGTGGCGGCGGTGGAGAACAGCTTCCAGGGGTCGGTGGAGGG GATCGCTCGCACGCGCAGCCGCTCGCGGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5915:306..2236+

>mRNA_P-wetherbeei_contig5915.1.1 ID=mRNA_P-wetherbeei_contig5915.1.1|Name=mRNA_P-wetherbeei_contig5915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig5915:306..2236+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGCATGCAGAAAGTCGTGAACTGCATGAAAGACCTCTGCGGTCT
CGACGCCGCCAGCGCCTTCCTTGACGTCGGCAGCGGCCTCGGGAAGCCCA
ATTTTCACGACCCTGGCTGCCAGATCTCGTACGGCGTAGAGCTCGAGGAG
GTGCGCTGGCGTCTCTCCATCCACAATCTCCGCGCGGTGCTGTATGCGGA
CGCAGGCACTGGCAGCGAGAAGAAGGAAAAGGCGCCGCTGCGGCAGCACA
ATGTCATCTTCGCCCGCGCCGACATCACCGATGCTAGCACCTTCGACCCG
TTCACGCACGTCTACACGTTTGACGTCGGGTTCCCCCCAGCAACTCTGGG
GCGGATGGCAGCAATGTTCAACGCGTCGGGCGCGCGCTACCTGATCAACT
ACCATCCGCCAAAGCAGACGGTCGACCGCGACGGTTTCGATGTGGAGCTC
GTTGCGCAGATGCACACCAGCCTCACAGGCAAGCAATAG
back to top