mRNA_P-wetherbeei_contig59108.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59108.1.1
Unique NamemRNA_P-wetherbeei_contig59108.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: A0A7C5R5J0_9PLAN (Type VI secretion system contractile sheath large subunit n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C5R5J0_9PLAN)

HSP 1 Score: 188 bits (478), Expect = 2.040e-55
Identity = 91/113 (80.53%), Postives = 103/113 (91.15%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NAR+ATQLPYILA SR AH+LKAMMRDKIGSFMSR+D E FLN WIMQYVTEDD AS EVKA +PLREAR++V EVPGKPG+YRA+A+LRPHFQL+ELTVSLRLVAELP +A+
Sbjct:  389 NARIATQLPYILAVSRFAHYLKAMMRDKIGSFMSRSDCERFLNKWIMQYVTEDDNASQEVKAQYPLREARVEVMEVPGKPGAYRAVAFLRPHFQLDELTVSLRLVAELPPSAR 501          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: A0A359LVN6_9BACT (Type VI secretion system contractile sheath large subunit (Fragment) n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A359LVN6_9BACT)

HSP 1 Score: 176 bits (447), Expect = 4.540e-55
Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL+TQLPYI+A SR AH+LK MMRDKIGSFMSR   + FLN WI+ YVT DD+ASAE KA  PLREAR+DV E+PGKPG YRA+A+LRPHFQL+ELTVSLRLVAELP  AK
Sbjct:   19 NARLSTQLPYIMAVSRFAHYLKVMMRDKIGSFMSREQADTFLNKWIINYVTPDDSASAETKARRPLREARVDVVEIPGKPGCYRAVAFLRPHFQLDELTVSLRLVAELPAPAK 131          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: A0A2W5YFH1_9BACT (Type VI secretion system contractile sheath large subunit n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A2W5YFH1_9BACT)

HSP 1 Score: 184 bits (467), Expect = 7.350e-54
Identity = 92/113 (81.42%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL+TQLPYI+A SR AH+LKAMMRDKIGSFMSRAD E FLN WI QYV  DDTASA  KA  PLREARIDV EVPGKPG YRA+A+LRPHFQL+ELTVSLRLVAELP AAK
Sbjct:  383 NARLSTQLPYIMAVSRFAHYLKAMMRDKIGSFMSRADAETFLNRWITQYVVPDDTASAAAKAKCPLREARIDVSEVPGKPGVYRAVAFLRPHFQLDELTVSLRLVAELPAAAK 495          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: UPI000E04E371 (type VI secretion system contractile sheath large subunit n=1 Tax=Pseudomonas sp. MWU12-2115 TaxID=2071713 RepID=UPI000E04E371)

HSP 1 Score: 171 bits (432), Expect = 9.930e-53
Identity = 82/112 (73.21%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAA 336
            NARL+TQLPYI A SRIAH++K++MRDKIGSF SR +V+ +LNTW+ QYV  DD+AS E KA +PLREAR+DV EVPGKPG YRA A+LRPHFQL+ELT+SLRLVAELPQ A
Sbjct:   23 NARLSTQLPYIFAVSRIAHYMKSIMRDKIGSFASRQNVQDYLNTWLAQYVLLDDSASQEAKAKYPLREARVDVVEVPGKPGVYRAAAFLRPHFQLDELTISLRLVAELPQPA 134          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: A0A3N5KME9_9BACT (Type VI secretion system contractile sheath large subunit (Fragment) n=1 Tax=Acidobacteriales bacterium TaxID=2282142 RepID=A0A3N5KME9_9BACT)

HSP 1 Score: 176 bits (447), Expect = 1.410e-52
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL+ QLPYILA SR AH++KA+MRDKIG+F SR++ E FLN WI QYVTEDDTAS  VK+ +PLREAR++V EVPGKPG+YRAIA++RPHFQLEELTVSLRLVA+LP++A+
Sbjct:  211 NARLSAQLPYILAVSRFAHYMKAIMRDKIGAFTSRSETERFLNNWITQYVTEDDTASQAVKSRYPLREARVEVTEVPGKPGAYRAIAFMRPHFQLEELTVSLRLVADLPESAR 323          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: A0A7Y2GWR2_9BACT (Type VI secretion system contractile sheath large subunit n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2GWR2_9BACT)

HSP 1 Score: 181 bits (458), Expect = 1.570e-52
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL++QL YILA SR AH+LKAMMRDKIGSFMSR D EYFLN WI  YVTEDDTAS  VKA +PLREAR+DV EVPGKPG YRA+A+LRPHFQL+EL+VSLRLVAELP  A+
Sbjct:  382 NARLSSQLQYILAVSRFAHYLKAMMRDKIGSFMSRKDAEYFLNRWIKNYVTEDDTASQSVKAEYPLREARVDVAEVPGKPGCYRAVAFLRPHFQLDELSVSLRLVAELPPPAQ 494          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: A0A317I1K9_9BACT (Type VI secretion system contractile sheath large subunit (Fragment) n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A317I1K9_9BACT)

HSP 1 Score: 173 bits (438), Expect = 1.760e-52
Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL+TQL YI+A SR AHF+KAMMRDKIGSFMSR + E FLN WI+QYV  +D    E+KASHPL+EARI+V EVPGKPG Y+A+A+LRPHFQL+ELTVSLRLVAELP +A+
Sbjct:  108 NARLSTQLQYIMAVSRFAHFIKAMMRDKIGSFMSRGECENFLNRWILQYVVANDNVGQEIKASHPLKEARIEVAEVPGKPGVYKAVAFLRPHFQLDELTVSLRLVAELPPSAR 220          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: UPI0019A9B3B3 (Type VI secretion system contractile sheath large subunit n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=UPI0019A9B3B3)

HSP 1 Score: 178 bits (452), Expect = 3.420e-52
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL+TQ+PYI+A SR AH+LKAMMRDKIGSFMSR D E FLN WI +YV  DDTAS E+KA  PLREAR+DV +VPGKPG YRA+A+LRPHFQL+ELTVSLRLVAELP AAK
Sbjct:  321 NARLSTQIPYIMAVSRFAHYLKAMMRDKIGSFMSRTDAEIFLNRWITRYVIPDDTASPEMKARCPLREARVDVVDVPGKPGVYRAVAFLRPHFQLDELTVSLRLVAELPAAAK 433          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: A0A7Y4X5T8_9DELT (Type VI secretion system contractile sheath large subunit n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4X5T8_9DELT)

HSP 1 Score: 179 bits (454), Expect = 6.210e-52
Identity = 87/113 (76.99%), Postives = 100/113 (88.50%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL+TQLPYI+ATSR AH+LKAMMRDKIGSFMSRAD E FLN WIM YVTED+TAS  VKA  PLR+ARI+V EVPGKPG Y+A+A+LRPHFQL+EL+VSLRLVAELP + +
Sbjct:  383 NARLSTQLPYIMATSRFAHYLKAMMRDKIGSFMSRADCERFLNRWIMNYVTEDETASPSVKAELPLRQARIEVAEVPGKPGVYKAVAFLRPHFQLDELSVSLRLVAELPASTR 495          
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Match: UPI0004E1CA55 (type VI secretion system contractile sheath large subunit n=1 Tax=Bryobacter aggregatus TaxID=360054 RepID=UPI0004E1CA55)

HSP 1 Score: 179 bits (453), Expect = 8.080e-52
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYVTEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTVSLRLVAELPQAAK 339
            NARL+TQLPYI+A SR AH+LK+MMRDKIGSFMSR+D E FLN WI QYVT DD AS   KA  PLREARIDV +VPGKPG+YRA+A+LRPHFQL+ELTVSLRLVAELP AAK
Sbjct:  380 NARLSTQLPYIMAVSRYAHYLKSMMRDKIGSFMSRSDAENFLNRWITQYVTPDDNASPAAKAKCPLREARIDVVDVPGKPGAYRAVAFLRPHFQLDELTVSLRLVAELPAAAK 492          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C5R5J0_9PLAN2.040e-5580.53Type VI secretion system contractile sheath large ... [more]
A0A359LVN6_9BACT4.540e-5575.22Type VI secretion system contractile sheath large ... [more]
A0A2W5YFH1_9BACT7.350e-5481.42Type VI secretion system contractile sheath large ... [more]
UPI000E04E3719.930e-5373.21type VI secretion system contractile sheath large ... [more]
A0A3N5KME9_9BACT1.410e-5273.45Type VI secretion system contractile sheath large ... [more]
A0A7Y2GWR2_9BACT1.570e-5277.88Type VI secretion system contractile sheath large ... [more]
A0A317I1K9_9BACT1.760e-5272.57Type VI secretion system contractile sheath large ... [more]
UPI0019A9B3B33.420e-5276.99Type VI secretion system contractile sheath large ... [more]
A0A7Y4X5T8_9DELT6.210e-5276.99Type VI secretion system contractile sheath large ... [more]
UPI0004E1CA558.080e-5277.88type VI secretion system contractile sheath large ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59108contigP-wetherbeei_contig59108:158..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1340493.JNIF01000004_gene593
Preferred nameimpC
PFAMsVipB
Model size342
Max annot lvl2|Bacteria
KEGG koko:K11900
KEGG TC3.A.23.1
KEGG Pathwayko02025,map02025
KEGG ModuleM00334
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.33e-52
EggNOG OGsCOG3517@1|root,COG3517@2|Bacteria
Descriptiontype VI secretion protein
Cds size342
COG categoryS
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.1101213-CDS-P-wetherbeei_contig59108:157..4991683186874.1101213-CDS-P-wetherbeei_contig59108:157..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59108 158..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59108.1.1prot_P-wetherbeei_contig59108.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59108 158..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59108.1.1

>prot_P-wetherbeei_contig59108.1.1 ID=prot_P-wetherbeei_contig59108.1.1|Name=mRNA_P-wetherbeei_contig59108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
NARLATQLPYILATSRIAHFLKAMMRDKIGSFMSRADVEYFLNTWIMQYV
TEDDTASAEVKASHPLREARIDVEEVPGKPGSYRAIAYLRPHFQLEELTV
SLRLVAELPQAAK*
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mRNA from alignment at P-wetherbeei_contig59108:158..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59108.1.1 ID=mRNA_P-wetherbeei_contig59108.1.1|Name=mRNA_P-wetherbeei_contig59108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig59108:158..499- (Phaeothamnion wetherbeei SAG_119_79)
AACGCCCGCCTGGCCACACAGCTCCCCTATATTCTGGCCACCTCACGCAT CGCGCACTTCCTGAAGGCGATGATGCGAGACAAGATCGGCTCGTTCATGA GCCGGGCCGATGTTGAGTACTTCCTCAACACCTGGATCATGCAGTACGTC ACTGAGGATGACACGGCCAGCGCCGAGGTAAAGGCCAGCCACCCGCTGCG CGAGGCCCGGATCGATGTCGAGGAAGTCCCCGGCAAGCCTGGGAGCTATC GCGCGATCGCCTACCTGCGGCCTCACTTCCAGCTTGAAGAGCTTACGGTT TCGCTGAGACTGGTCGCGGAGCTTCCCCAGGCCGCGAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59108:158..499-

>mRNA_P-wetherbeei_contig59108.1.1 ID=mRNA_P-wetherbeei_contig59108.1.1|Name=mRNA_P-wetherbeei_contig59108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig59108:158..499- (Phaeothamnion wetherbeei SAG_119_79)
AACGCCCGCCTGGCCACACAGCTCCCCTATATTCTGGCCACCTCACGCAT
CGCGCACTTCCTGAAGGCGATGATGCGAGACAAGATCGGCTCGTTCATGA
GCCGGGCCGATGTTGAGTACTTCCTCAACACCTGGATCATGCAGTACGTC
ACTGAGGATGACACGGCCAGCGCCGAGGTAAAGGCCAGCCACCCGCTGCG
CGAGGCCCGGATCGATGTCGAGGAAGTCCCCGGCAAGCCTGGGAGCTATC
GCGCGATCGCCTACCTGCGGCCTCACTTCCAGCTTGAAGAGCTTACGGTT
TCGCTGAGACTGGTCGCGGAGCTTCCCCAGGCCGCGAAGTAA
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