mRNA_P-wetherbeei_contig59107.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59107.1.1
Unique NamemRNA_P-wetherbeei_contig59107.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: A0A349W860_9BURK (SAM-dependent methyltransferase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A349W860_9BURK)

HSP 1 Score: 199 bits (507), Expect = 9.110e-57
Identity = 99/139 (71.22%), Postives = 113/139 (81.29%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAE---PGTSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRK 408
            W++   GRL+S  RYSKDIVYNN+PWPDLP  ++   P    HKA+ AIE AAQGVLD RA+FQ+G+  ASLADLYDPLTMPP L KAHQKLDAAVDAAYA CGGKKTWKNDAERVAFLFE YQR+TSLLP  KP+ ++
Sbjct:  805 WIRATCGRLESRYRYSKDIVYNNFPWPDLPEDSKQNPPLAPIHKAQEAIEIAAQGVLDARAQFQRGERPASLADLYDPLTMPPALLKAHQKLDAAVDAAYALCGGKKTWKNDAERVAFLFERYQRITSLLPTGKPQRKR 943          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: A0A6N9RLW2_9BURK (Class I SAM-dependent DNA methyltransferase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A6N9RLW2_9BURK)

HSP 1 Score: 188 bits (477), Expect = 2.920e-55
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPGTSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRKPRKAA 423
            W++   GR+KSD RYSKDIVYNN+PWPDL ++ +P   A +A+ AIE AAQ VLD RA F +    +SLADLYDPLTMPP+L KAHQKLDAAVDAAYA  GGKKTWKNDAERVAFLFELYQR TSLLPAEK K  KP+++A
Sbjct:  297 WVRYTCGRIKSDYRYSKDIVYNNFPWPDL-SSNQPSPQAGRAQAAIEIAAQAVLDARALFPE----SSLADLYDPLTMPPVLVKAHQKLDAAVDAAYALGGGKKTWKNDAERVAFLFELYQRYTSLLPAEKAKS-KPKRSA 431          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: A0A5B8S1F8_9BURK (Uncharacterized protein n=1 Tax=Comamonas sp. NLF-7-7 TaxID=2597701 RepID=A0A5B8S1F8_9BURK)

HSP 1 Score: 183 bits (465), Expect = 2.770e-54
Identity = 96/145 (66.21%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPG---TSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRKPRKAAT 426
            W++ V GRL+S  RYS  IVYNN+PWPDLP  +EP    T AHKA+ AIE AAQ VLD RA+F      +SLADLYDPLTMPP L KAHQKLDAAVDAAYA CGGKKTWK+DAERVAFLFE YQ++TSLLP  K +  + R +A+
Sbjct:  218 WVRAVCGRLESRYRYSAAIVYNNFPWPDLPPKSEPNRPPTPAHKAQTAIETAAQAVLDARAQFPA----SSLADLYDPLTMPPALLKAHQKLDAAVDAAYALCGGKKTWKSDAERVAFLFERYQQLTSLLPVGKARAGRKRASAS 358          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: A0A1Q8YAK8_9BURK (MmeI n=1 Tax=Rhodoferax antarcticus ANT.BR TaxID=1111071 RepID=A0A1Q8YAK8_9BURK)

HSP 1 Score: 192 bits (488), Expect = 4.680e-54
Identity = 97/140 (69.29%), Postives = 111/140 (79.29%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAE---PGTSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLP--AEKPKGR 405
            W++   GR+KSD +YS  IVYNN+PWPDLP T+E   P    HKA+ AIE AAQ VLD RA+FQ G++ ASLADLYDPLTMP +L KAHQKLDAAVDAAYA  GGKKTWK+DAERVA+LFELYQR TSLLP  A KPK +
Sbjct:  874 WMRATAGRMKSDYQYSAQIVYNNFPWPDLPKTSEQNQPPAPVHKAQAAIETAAQAVLDARAQFQTGEHPASLADLYDPLTMPSVLLKAHQKLDAAVDAAYASSGGKKTWKSDAERVAYLFELYQRYTSLLPVTAAKPKRK 1013          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: A0A8F5F0W1_9BURK (Class I SAM-dependent DNA methyltransferase n=1 Tax=Comamonas sp. NLF-1-9 TaxID=2853163 RepID=A0A8F5F0W1_9BURK)

HSP 1 Score: 190 bits (482), Expect = 2.660e-53
Identity = 99/141 (70.21%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPG---TSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRKPR 414
            WL++VGGRLKSD RYS  IVYNN+PWPDLPA +EP    T  HKA+ AIE AAQ VL  RA F      +SLADLYDPLTMPP L KAHQKLDAAVDAAYA CGGKKTWK+DAERVA+LFE YQ++TSLLP  K K  K R
Sbjct:  829 WLRIVGGRLKSDFRYSAAIVYNNFPWPDLPAESEPNQPLTPVHKAQAAIETAAQAVLAARASFPG----SSLADLYDPLTMPPALLKAHQKLDAAVDAAYALCGGKKTWKSDAERVAYLFERYQQLTSLLPVGKAKADKKR 965          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: UPI000401611F (class I SAM-dependent DNA methyltransferase n=1 Tax=Comamonas badia TaxID=265291 RepID=UPI000401611F)

HSP 1 Score: 188 bits (478), Expect = 9.830e-53
Identity = 98/143 (68.53%), Postives = 111/143 (77.62%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPG---TSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRKPRKA 420
            W++ VGGRLK+D RYS  IVYNN+PWPDLP  +EP    T A+KAR AIE AAQ VLD RA+F  G    SLADLYDPLTMPP L +AHQKLDAAVDAAYA CGG+KTWKNDAERVAFLF  YQ++TSLLP  K K  + R+A
Sbjct:  843 WMRAVGGRLKNDFRYSAAIVYNNFPWPDLPQKSEPNRPPTPAYKARAAIETAAQTVLDARAQFPGG----SLADLYDPLTMPPALLRAHQKLDAAVDAAYALCGGRKTWKNDAERVAFLFARYQQLTSLLPVGKVKRGRGRRA 981          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: UPI000C32D960 (N-6 DNA methylase n=1 Tax=Macromonas bipunctata TaxID=183670 RepID=UPI000C32D960)

HSP 1 Score: 184 bits (467), Expect = 2.890e-51
Identity = 97/143 (67.83%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPGTSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGG---KKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRKPRKA 420
            W++ V GRLKSD +YS  +VYNN+PWP LP    P T  HKA+ AIE AAQ VLD RA+FQQ    ASLADLYDPLTMPP L KAHQKLDAAVD AYA   G   KKTW NDAERVAFLFE YQR+TSLLPA  P   KPR+A
Sbjct:  801 WIRTVAGRLKSDYQYSGSMVYNNFPWPTLPTNPAPRTPEHKAKTAIETAAQAVLDARAKFQQATPPASLADLYDPLTMPPELLKAHQKLDAAVDTAYALTAGLPAKKTWHNDAERVAFLFEQYQRLTSLLPAAAPA--KPRRA 941          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: A0A1D2S677_9BURK (Methylase n=1 Tax=Comamonas sp. SCN 65-56 TaxID=1660095 RepID=A0A1D2S677_9BURK)

HSP 1 Score: 183 bits (465), Expect = 5.430e-51
Identity = 96/145 (66.21%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPG---TSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRKPRKAAT 426
            W++ V GRLKSD RYS  IVYNN+PWPDLP  +EP    T AHKA+ AIE AAQ VLD RA+F      +SLADLYDPLTMPP+L KAH KLDAAVDAAYA  GGKKTWK+DAERVAFLFE YQ++TSLLP  K +  + R +A+
Sbjct:  805 WVRAVCGRLKSDFRYSAAIVYNNFPWPDLPPKSEPNRPPTPAHKAQTAIETAAQAVLDARAQFPA----SSLADLYDPLTMPPVLLKAHHKLDAAVDAAYALVGGKKTWKSDAERVAFLFERYQQLTSLLPVGKARAGRKRASAS 945          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: A0A554XIE9_9BURK (Uncharacterized protein n=1 Tax=Tepidimonas charontis TaxID=2267262 RepID=A0A554XIE9_9BURK)

HSP 1 Score: 183 bits (465), Expect = 5.710e-51
Identity = 88/133 (66.17%), Postives = 105/133 (78.95%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPGTSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPK 399
            W++ V GRLKSD RYS  IVYNN+PWPDLPA A PG++AH+AR AIE AAQ VL+ RARFQQGD  A+LADLYDPL+MPP+L KAHQ LDAAVDAAY   G  K W+ +AERVA+LF  Y+++T  LPA  P+
Sbjct:  830 WVRAVCGRLKSDFRYSAAIVYNNFPWPDLPAEAAPGSAAHRARAAIEGAAQAVLEARARFQQGDRPATLADLYDPLSMPPVLRKAHQGLDAAVDAAYTLGGAPKAWRTEAERVAYLFTRYRQLTQPLPATVPR 962          
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Match: UPI001A994CE8 (class I SAM-dependent DNA methyltransferase n=1 Tax=Comamonas denitrificans TaxID=117506 RepID=UPI001A994CE8)

HSP 1 Score: 181 bits (458), Expect = 5.070e-50
Identity = 96/138 (69.57%), Postives = 105/138 (76.09%), Query Frame = 1
Query:    1 WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPG---TSAHKARVAIEAAAQGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQCGGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGR 405
            W++ V GRL+S  RYS  IVYN +PWPDLP   EP    T AHKA+ AIE AAQ VLD RA+F      +SLADLYDPLTMPP L KAHQKLDAAVDAAYA  GGKKTWKNDAERVAFLFE YQ +TSLLPA K KG+
Sbjct:  821 WVRAVCGRLESRYRYSAAIVYNTFPWPDLPEKLEPNQPQTPAHKAQTAIEKAAQAVLDARAQFPG----SSLADLYDPLTMPPALLKAHQKLDAAVDAAYALVGGKKTWKNDAERVAFLFERYQHLTSLLPAVKGKGK 954          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A349W860_9BURK9.110e-5771.22SAM-dependent methyltransferase n=1 Tax=Comamonada... [more]
A0A6N9RLW2_9BURK2.920e-5570.21Class I SAM-dependent DNA methyltransferase n=1 Ta... [more]
A0A5B8S1F8_9BURK2.770e-5466.21Uncharacterized protein n=1 Tax=Comamonas sp. NLF-... [more]
A0A1Q8YAK8_9BURK4.680e-5469.29MmeI n=1 Tax=Rhodoferax antarcticus ANT.BR TaxID=1... [more]
A0A8F5F0W1_9BURK2.660e-5370.21Class I SAM-dependent DNA methyltransferase n=1 Ta... [more]
UPI000401611F9.830e-5368.53class I SAM-dependent DNA methyltransferase n=1 Ta... [more]
UPI000C32D9602.890e-5167.83N-6 DNA methylase n=1 Tax=Macromonas bipunctata Ta... [more]
A0A1D2S677_9BURK5.430e-5166.21Methylase n=1 Tax=Comamonas sp. SCN 65-56 TaxID=16... [more]
A0A554XIE9_9BURK5.710e-5166.17Uncharacterized protein n=1 Tax=Tepidimonas charon... [more]
UPI001A994CE85.070e-5069.57class I SAM-dependent DNA methyltransferase n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59107contigP-wetherbeei_contig59107:63..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1100720.ALKN01000007_gene2987
PFAMsN6_Mtase
Model size438
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.34e-43
EggNOG OGsCOG1002@1|root,COG1002@2|Bacteria,1MWRH@1224|Proteobacteria,2VMKD@28216|Betaproteobacteria,4ACZU@80864|Comamonadaceae
Descriptiontype II restriction enzyme, methylase
Cds size438
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.0837724-CDS-P-wetherbeei_contig59107:62..5001683186874.0837724-CDS-P-wetherbeei_contig59107:62..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59107 63..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59107.1.1prot_P-wetherbeei_contig59107.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59107 63..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59107.1.1

>prot_P-wetherbeei_contig59107.1.1 ID=prot_P-wetherbeei_contig59107.1.1|Name=mRNA_P-wetherbeei_contig59107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
WLQLVGGRLKSDLRYSKDIVYNNYPWPDLPATAEPGTSAHKARVAIEAAA
QGVLDTRARFQQGDNHASLADLYDPLTMPPLLHKAHQKLDAAVDAAYAQC
GGKKTWKNDAERVAFLFELYQRVTSLLPAEKPKGRKPRKAATPAT*
back to top

mRNA from alignment at P-wetherbeei_contig59107:63..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59107.1.1 ID=mRNA_P-wetherbeei_contig59107.1.1|Name=mRNA_P-wetherbeei_contig59107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig59107:63..500- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTTCAATTGGTAGGTGGCCGTCTAAAGAGTGATTTACGCTACTCCAA AGACATCGTCTACAACAACTACCCTTGGCCGGACCTGCCCGCTACCGCCG AACCAGGGACCTCCGCCCACAAGGCCAGGGTCGCCATTGAAGCCGCTGCC CAAGGCGTGCTCGATACTCGCGCCCGCTTCCAACAAGGCGACAACCACGC GTCGTTGGCCGACCTGTACGACCCGCTGACCATGCCGCCCCTGCTGCACA AGGCGCACCAGAAACTCGATGCTGCGGTGGACGCGGCCTACGCGCAGTGC GGCGGCAAGAAGACTTGGAAGAACGACGCCGAACGCGTGGCATTTCTGTT CGAGCTCTACCAGCGCGTCACCAGCTTGTTGCCAGCCGAAAAGCCCAAGG GCAGAAAGCCGCGCAAAGCAGCCACTCCCGCGACGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig59107:63..500-

>mRNA_P-wetherbeei_contig59107.1.1 ID=mRNA_P-wetherbeei_contig59107.1.1|Name=mRNA_P-wetherbeei_contig59107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig59107:63..500- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTTCAATTGGTAGGTGGCCGTCTAAAGAGTGATTTACGCTACTCCAA
AGACATCGTCTACAACAACTACCCTTGGCCGGACCTGCCCGCTACCGCCG
AACCAGGGACCTCCGCCCACAAGGCCAGGGTCGCCATTGAAGCCGCTGCC
CAAGGCGTGCTCGATACTCGCGCCCGCTTCCAACAAGGCGACAACCACGC
GTCGTTGGCCGACCTGTACGACCCGCTGACCATGCCGCCCCTGCTGCACA
AGGCGCACCAGAAACTCGATGCTGCGGTGGACGCGGCCTACGCGCAGTGC
GGCGGCAAGAAGACTTGGAAGAACGACGCCGAACGCGTGGCATTTCTGTT
CGAGCTCTACCAGCGCGTCACCAGCTTGTTGCCAGCCGAAAAGCCCAAGG
GCAGAAAGCCGCGCAAAGCAGCCACTCCCGCGACGTGA
back to top