mRNA_P-wetherbeei_contig591.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig591.9.1
Unique NamemRNA_P-wetherbeei_contig591.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig591.9.1 vs. uniprot
Match: A0A836C7R9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-9
Identity = 57/152 (37.50%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:  787 ITTALFNALAEVAREGMVGLRLRSGDGASAK----KSVEVLLLEPAFNATLPGNIPPITRRSLRALRKVIAWLKPEALAAF----VQADSAASTASKASPPSAAEFYAAVEAARSADPAVQRALVDGCELPPMPELEPTLRRYQQAAVAFMV 1218
            I  AL+ AL    ++ +V L        SA+    + + + L   AF+AT P ++PP+T+ +LR LR ++  L P  L  +    + AD    +    +  +A E Y A+EA R+AD  +QRAL  G  LP  P L P LRRYQQAAVA+M+
Sbjct:  148 IDAALWAALRASLQDKLVALHAPDDACGSAQPLRPRRLRLSLQRAAFSATSPLSVPPVTKPALRRLRDLVFALSPATLEPYWSPRLAADGGGGSGGS-TLITAHELYDAIEARRAADAPLQRALQAGAPLPRTPALLPALRRYQQAAVAWML 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig591.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7R9_9STRA1.330e-937.50SNF2 family N-terminal domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig591contigP-wetherbeei_contig591:4903..6222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1218
Hectar predicted targeting categoryother localisation
Exons2
Cds size966
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.8360302-UTR-P-wetherbeei_contig591:4902..51541683186873.8360302-UTR-P-wetherbeei_contig591:4902..5154Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig591 4903..5154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.8471773-CDS-P-wetherbeei_contig591:5154..53601683186873.8471773-CDS-P-wetherbeei_contig591:5154..5360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig591 5155..5360 +
1683186873.8566048-CDS-P-wetherbeei_contig591:5462..62221683186873.8566048-CDS-P-wetherbeei_contig591:5462..6222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig591 5463..6222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig591.9.1prot_P-wetherbeei_contig591.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig591 5155..6222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig591.9.1

>prot_P-wetherbeei_contig591.9.1 ID=prot_P-wetherbeei_contig591.9.1|Name=mRNA_P-wetherbeei_contig591.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=322bp
MPRKTFTPKKKEGSTTNFAQPALPQVAEPDDDRHAPNEEAWDAGEVFVEE
EEDGEEGAVRQPKRYKRAKEIAASVPEGGTTPPTLGLVQLKSASNRAVKR
LIPGRHVAVDGESFVRLVEGIRNSKVVADDEESPKKPIGVGVFAAVGDEA
VQGSEANDGDGSMALTLPEASNLAGILPITTALFNALAEVAREGMVGLRL
RSGDGASAKKSVEVLLLEPAFNATLPGNIPPITRRSLRALRKVIAWLKPE
ALAAFVQADSAASTASKASPPSAAEFYAAVEAARSADPAVQRALVDGCEL
PPMPELEPTLRRYQQAAVAFMV
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mRNA from alignment at P-wetherbeei_contig591:4903..6222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig591.9.1 ID=mRNA_P-wetherbeei_contig591.9.1|Name=mRNA_P-wetherbeei_contig591.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1320bp|location=Sequence derived from alignment at P-wetherbeei_contig591:4903..6222+ (Phaeothamnion wetherbeei SAG_119_79)
CCTTATATGTCTATAGAAAGGGCGCGCGCACGTTTTTTTCGAGTTTTTCA
AAGGTCTCAGGGGGGTTAAGGCGGAACAAACCTAGACCCCCCCTACAGGA
ATAGTTGTACCCCCACCACTGTACTGTACACCGGAATTAAAATCCGGAAG
AAAGCCAATTGCGGGATTTTCGGCACGGGGGGGAACGACAAGGTTTGGAC
GGCAGTCAACGTTTCCTTCTCAAATAGGAGGGGTGATGCTTTTGCGGTCG
TCATGCCGCGGAAGACGTTCACGCCAAAGAAGAAAGAGGGTTCGACGACC
AATTTCGCACAGCCAGCCCTTCCCCAGGTCGCAGAGCCTGACGACGACAG
GCATGCGCCCAATGAGGAGGCTTGGGATGCCGGCGAAGTATTCGTGGAAG
AAGAAGAAGACGGAGAAGAAGGGGCTGTGCGACAACCTAAACGTTATAAG
AGGGCCAAGTAAGCGCGAATTTCCTTCTTACGCCGCCGTTTCTGCGACAT
ATTACACAGTATGAAGCGCTTTTTTATCTTCTCTTGTTTTAATCTCACCC
ATTCCTTCAGGGAAATCGCGGCCAGCGTGCCTGAAGGTGGCACAACCCCT
CCGACGCTGGGCCTCGTTCAGCTTAAATCAGCGTCCAACCGCGCCGTCAA
AAGACTCATCCCTGGACGTCACGTGGCTGTCGATGGCGAGAGCTTCGTGA
GGCTTGTCGAGGGCATCAGGAATAGCAAGGTGGTAGCGGATGACGAAGAG
AGCCCAAAAAAGCCCATCGGTGTCGGTGTCTTTGCGGCAGTTGGAGATGA
GGCGGTGCAGGGGAGCGAAGCAAACGACGGTGACGGCAGCATGGCCCTTA
CTCTACCAGAGGCGTCCAATCTCGCGGGGATCCTCCCAATCACCACGGCA
CTCTTCAACGCGCTCGCAGAGGTGGCGCGGGAAGGGATGGTCGGGCTCCG
CCTGCGCAGCGGCGACGGAGCCTCGGCAAAAAAGAGCGTCGAGGTGCTGC
TGCTCGAGCCGGCCTTCAACGCGACGCTACCCGGCAATATCCCACCCATC
ACGCGGCGCAGCCTCCGGGCGCTGCGGAAAGTCATCGCGTGGCTGAAACC
CGAGGCCCTGGCGGCCTTCGTCCAGGCCGACAGCGCGGCCTCCACGGCCT
CGAAGGCGTCGCCACCCTCCGCCGCCGAGTTTTATGCCGCTGTCGAGGCC
GCAAGATCTGCTGACCCGGCGGTGCAACGGGCGCTCGTCGACGGCTGCGA
GCTGCCACCCATGCCGGAGCTCGAGCCGACGTTGCGGCGGTACCAGCAGG
CCGCGGTCGCCTTTATGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig591:4903..6222+

>mRNA_P-wetherbeei_contig591.9.1 ID=mRNA_P-wetherbeei_contig591.9.1|Name=mRNA_P-wetherbeei_contig591.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig591:4903..6222+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCGGAAGACGTTCACGCCAAAGAAGAAAGAGGGTTCGACGACCAA
TTTCGCACAGCCAGCCCTTCCCCAGGTCGCAGAGCCTGACGACGACAGGC
ATGCGCCCAATGAGGAGGCTTGGGATGCCGGCGAAGTATTCGTGGAAGAA
GAAGAAGACGGAGAAGAAGGGGCTGTGCGACAACCTAAACGTTATAAGAG
GGCCAAGGAAATCGCGGCCAGCGTGCCTGAAGGTGGCACAACCCCTCCGA
CGCTGGGCCTCGTTCAGCTTAAATCAGCGTCCAACCGCGCCGTCAAAAGA
CTCATCCCTGGACGTCACGTGGCTGTCGATGGCGAGAGCTTCGTGAGGCT
TGTCGAGGGCATCAGGAATAGCAAGGTGGTAGCGGATGACGAAGAGAGCC
CAAAAAAGCCCATCGGTGTCGGTGTCTTTGCGGCAGTTGGAGATGAGGCG
GTGCAGGGGAGCGAAGCAAACGACGGTGACGGCAGCATGGCCCTTACTCT
ACCAGAGGCGTCCAATCTCGCGGGGATCCTCCCAATCACCACGGCACTCT
TCAACGCGCTCGCAGAGGTGGCGCGGGAAGGGATGGTCGGGCTCCGCCTG
CGCAGCGGCGACGGAGCCTCGGCAAAAAAGAGCGTCGAGGTGCTGCTGCT
CGAGCCGGCCTTCAACGCGACGCTACCCGGCAATATCCCACCCATCACGC
GGCGCAGCCTCCGGGCGCTGCGGAAAGTCATCGCGTGGCTGAAACCCGAG
GCCCTGGCGGCCTTCGTCCAGGCCGACAGCGCGGCCTCCACGGCCTCGAA
GGCGTCGCCACCCTCCGCCGCCGAGTTTTATGCCGCTGTCGAGGCCGCAA
GATCTGCTGACCCGGCGGTGCAACGGGCGCTCGTCGACGGCTGCGAGCTG
CCACCCATGCCGGAGCTCGAGCCGACGTTGCGGCGGTACCAGCAGGCCGC
GGTCGCCTTTATGGTC
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