mRNA_P-wetherbeei_contig591.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig591.1.1
Unique NamemRNA_P-wetherbeei_contig591.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: A0A811SQ34_9POAL (Protein FAR1-RELATED SEQUENCE n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811SQ34_9POAL)

HSP 1 Score: 71.6 bits (174), Expect = 5.190e-10
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 2
Query:  422 MRKEDTAAFTWAFDNYVD--WCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEHTDKHIRGDPNLLRACRAAFRKAEYAATQEE-----FDACWRDLM 736
            +  E T  F WAF+N+ D  W   GGL  P  +LTD C+A AAA+KT+M  T H  C WH+ + LK+H           L +  +AF+K       EE     F+  WR L+
Sbjct:  511 LTSEKTEDFEWAFNNFTDIIW---GGLEQPLTMLTDQCQAMAAALKTTMKGTKHRWCRWHVLRKLKQHVGN--------LYSKHSAFKKEFNKLVTEETSVQRFERKWRQLL 611          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: A0A0F7ZZT1_9HYPO (MULE domain-containing protein n=1 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F7ZZT1_9HYPO)

HSP 1 Score: 67.0 bits (162), Expect = 1.410e-8
Identity = 47/144 (32.64%), Postives = 62/144 (43.06%), Query Frame = 2
Query:  422 MRKEDTAAFTWAFDNYVDWC---------CDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEHTDKHIRGD-------------------PNLLRACRA-------AFRKAEYAATQEEFDACWRDLMVSGF 748
            M +EDTAAFTW F+   DW           D    P  VI+TD   A  AA+  + P     +C+WH+ KN+  H  KH +GD                   P   R  +A       AF+   YA T EEFD  W + ++S F
Sbjct:   44 MPREDTAAFTWCFEQLRDWMTAEARQRELADDAFIPH-VIITDYDAAERAALAATFPEAQLQVCTWHIMKNIATHARKHWQGDDDDPFELNREEIQRGEDPGPWTARPGQAKPADFIAAFQSVLYAPTAEEFDDRW-NALISAF 185          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.450e-8
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  395 RTRVVCQGFMRKEDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPS--TNHLLCSWHLYKNLKEHTDKHIRGDP--NLLRACRAAFRKAEYAATQEEFDACWRDL--MVSGFD 751
            +T+V  QGF   E T AF +A   ++D C  GG   P VI+TD   A   +I+   P   T HLLCSWH+ KN+K+     ++ +   +LLR     + +A  A + E FD  W D+  +V G D
Sbjct:  111 KTQVFAQGFFSNESTEAFDFANKFFLDIC--GGH--PKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRR----WTRASLATSIEAFDGVWTDVEDLVKGTD 227          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: A0A6A3CUE3_HIBSY (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CUE3_HIBSY)

HSP 1 Score: 60.1 bits (144), Expect = 2.620e-6
Identity = 39/119 (32.77%), Postives = 59/119 (49.58%), Query Frame = 2
Query:  386 IVYRTRVVCQGFMRKEDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEHTDKHIRGDPNLLRACRAAFRKAEYAA-TQEEFDACWRDLMV 739
            IV+ T ++       E + +F W   N+++   +     P  ++TD  KA   AIK+ +P T H+LCSWHL  N + +      GDP       AAF K   +  T EEFD  WR +++
Sbjct:  185 IVFATAIIAD-----ETSQSFEWVLQNFLEAMMNKS---PISVVTDGDKAMQRAIKSIIPYTKHILCSWHLSHNAQANI-----GDPKFT----AAFSKCMASWWTTEEFDIQWRSVIL 286          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: A0A0A9TKT4_ARUDO (Protein FAR1-RELATED SEQUENCE n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9TKT4_ARUDO)

HSP 1 Score: 60.1 bits (144), Expect = 2.960e-6
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  422 MRKEDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKE 616
            + +E TA F WAF  ++     GG  P   +LTD C+A  AAIKT++P+T H  C WH+ + +KE
Sbjct:  432 LTRETTADFEWAFSKFIKTM--GGKAPV-TMLTDQCQAMEAAIKTTLPNTKHRWCRWHVLRKVKE 493          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: A0A5J9WPP5_9POAL (Protein FAR1-RELATED SEQUENCE (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WPP5_9POAL)

HSP 1 Score: 58.9 bits (141), Expect = 6.600e-6
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  422 MRKEDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEH 619
            +R E T  F WAF  ++    DG    P  ILTD C+A  AAIKT++PS  H  C WH+ K  KE+
Sbjct:  309 LRTEKTEDFVWAFSAFLK-IMDGKA--PQTILTDQCQAMEAAIKTTIPSARHRWCRWHVLKKAKEY 371          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: A0A5J9UJV8_9POAL (Protein FAR1-RELATED SEQUENCE (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UJV8_9POAL)

HSP 1 Score: 58.9 bits (141), Expect = 6.680e-6
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 2
Query:  431 EDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKE 616
            E T +F W+F  + +     G CP   ILTD C A  AA+KT+MP T H  C WH+ +N KE
Sbjct:  310 ETTESFEWSFSTFQNIM--NGKCPQ-TILTDQCAAMEAALKTTMPGTRHRWCRWHVLRNAKE 368          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: UPI0018F7E879 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F7E879)

HSP 1 Score: 58.5 bits (140), Expect = 8.800e-6
Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 2
Query:  431 EDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEHTDKHIRGDPNLLRACRAAFRKAEYAATQEEFDACWRDLM 736
            E T  + W  D ++     G   P  VI TD CKA AAAI+  +P+  H LC WHL +N   +   H    PN +++    FR  E     E FD  W +L+
Sbjct:  283 ETTTTYMWLLDTFLR--AMGNKMPVSVI-TDGCKAMAAAIRAKLPNARHRLCEWHLERNCSANI--HRGNFPNEVKSL---FRHKE----PETFDTAWHELL 372          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: A0A0C4FE01_PUCT1 (MULE domain-containing protein n=2 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4FE01_PUCT1)

HSP 1 Score: 55.1 bits (131), Expect = 1.360e-5
Identity = 23/73 (31.51%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  419 FMRKEDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEHTDKHIR 637
            F+ KE    + WA  + +       +  P V+LTD  +A  ++++++ P++ H+LC+WH+ KNL  +  KHI+
Sbjct:   65 FLAKETQDYYDWALKSLLTVFTSNKIPLPAVVLTDQEEALISSLQSNFPNSTHMLCTWHIQKNLVSNGAKHIK 137          
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Match: UPI0018F80BCC (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F80BCC)

HSP 1 Score: 57.4 bits (137), Expect = 1.510e-5
Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = 2
Query:  431 EDTAAFTWAFDNYVDWCCDGGLCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEHTDKHIRGDPNLLRACRAAFRKAEYAATQEEFDACWRDLM 736
            E T  + W  D ++     G   P  VI TD CKA AAAI+  +P+  H LC WHL +N   +   H    PN +++    FR  +     E FD  W +L+
Sbjct:  283 ETTTTYMWLLDTFLR--AMGNKMPVSVI-TDGCKAMAAAIRAKLPNARHRLCEWHLERNCSANI--HRGNFPNEVKSL---FRHKD----PETFDTAWHELL 372          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig591.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A811SQ34_9POAL5.190e-1037.50Protein FAR1-RELATED SEQUENCE n=1 Tax=Miscanthus l... [more]
A0A0F7ZZT1_9HYPO1.410e-832.64MULE domain-containing protein n=1 Tax=Hirsutella ... [more]
D7FLF6_ECTSI1.450e-836.80Putative far-red impaired response protein n=1 Tax... [more]
A0A6A3CUE3_HIBSY2.620e-632.77Protein FAR1-RELATED SEQUENCE n=1 Tax=Hibiscus syr... [more]
A0A0A9TKT4_ARUDO2.960e-643.08Protein FAR1-RELATED SEQUENCE n=1 Tax=Arundo donax... [more]
A0A5J9WPP5_9POAL6.600e-645.45Protein FAR1-RELATED SEQUENCE (Fragment) n=1 Tax=E... [more]
A0A5J9UJV8_9POAL6.680e-645.16Protein FAR1-RELATED SEQUENCE (Fragment) n=1 Tax=E... [more]
UPI0018F7E8798.800e-635.29protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Tript... [more]
A0A0C4FE01_PUCT11.360e-531.51MULE domain-containing protein n=2 Tax=Puccinia tr... [more]
UPI0018F80BCC1.510e-534.31protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Tript... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig591contigP-wetherbeei_contig591:58..1057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4558.Sb05g009983.1
PFAMsFAR1,MULE,SWIM
Model size1000
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-10
EggNOG OGs2CMNZ@1|root,2QR4C@2759|Eukaryota,37R7C@33090|Viridiplantae,3GEJS@35493|Streptophyta,3M2I5@4447|Liliopsida,3I4NP@38820|Poales
DescriptionProtein FAR1-RELATED SEQUENCE
Cds size561
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.8867881-UTR-P-wetherbeei_contig591:57..2501683186873.8867881-UTR-P-wetherbeei_contig591:57..250Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig591 58..250 +
1683186873.9143224-UTR-P-wetherbeei_contig591:811..10571683186873.9143224-UTR-P-wetherbeei_contig591:811..1057Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig591 812..1057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.90274-CDS-P-wetherbeei_contig591:250..8111683186873.90274-CDS-P-wetherbeei_contig591:250..811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig591 251..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig591.1.1prot_P-wetherbeei_contig591.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig591 251..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig591.1.1

>prot_P-wetherbeei_contig591.1.1 ID=prot_P-wetherbeei_contig591.1.1|Name=mRNA_P-wetherbeei_contig591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
MVASMLAAEYNLHAAAQYIRVCRPSNWTCTGWCSPCPDPTHKLVGTGGGN
ATQVQDRFRRYFHFIVYRTRVVCQGFMRKEDTAAFTWAFDNYVDWCCDGG
LCPPGVILTDDCKAAAAAIKTSMPSTNHLLCSWHLYKNLKEHTDKHIRGD
PNLLRACRAAFRKAEYAATQEEFDACWRDLMVSGFD*
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mRNA from alignment at P-wetherbeei_contig591:58..1057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig591.1.1 ID=mRNA_P-wetherbeei_contig591.1.1|Name=mRNA_P-wetherbeei_contig591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1000bp|location=Sequence derived from alignment at P-wetherbeei_contig591:58..1057+ (Phaeothamnion wetherbeei SAG_119_79)
AACGATGTGCTTTTTTACCTCTGCCATTTAGTATCGCTGGCAGGAGGGCA GTCTTATCCCTCATGGCGTCGCCTGACCTGCCTATACCCGCCAGCAAGAT CATCACGATGGTGCGGTCCGATAAGTGCACACTCGCTGACACAACGCGCT TCTGGCTGACTCTACCTCGACAAAGCCATGGTGGGGCGGCGTGATGGTTG CATCCATGCTGGCTGCCGAGTACAATTTGCACGCGGCGGCTCAGTACATT CGCGTGTGCAGACCCTCCAACTGGACCTGCACCGGCTGGTGCTCTCCCTG CCCGGATCCAACCCACAAGCTGGTCGGCACAGGAGGCGGCAATGCGACCC AAGTTCAAGACCGCTTTCGACGGTACTTTCATTTCATCGTGTACAGGACC AGGGTCGTCTGCCAAGGCTTCATGCGCAAGGAGGATACCGCGGCGTTCAC TTGGGCCTTCGACAACTACGTGGATTGGTGCTGCGATGGCGGATTGTGCC CGCCAGGCGTCATCCTCACCGACGACTGCAAGGCGGCGGCAGCGGCGATC AAAACGAGCATGCCCAGCACCAATCACCTCCTCTGCTCTTGGCATCTCTA CAAGAATCTCAAGGAGCACACCGACAAGCATATTCGTGGCGATCCCAATC TCCTGCGCGCCTGCCGCGCAGCCTTCCGCAAAGCAGAGTACGCGGCGACA CAGGAAGAGTTCGACGCGTGCTGGCGCGACCTCATGGTGAGTGGTTTTGA TTGAGGACTCTGGCGTGCCTTTTTTGTGAGAGCGCCTGGCTGAGCGTCAC GGAAAGTTTGAGGAGAGAAACTGGTGCTGCCATGTAGTCTCCGAAACGCA GCAAGTCTGCTACAGTCTCGCCAGCCTCTACAGGCCTCCTTTAAACGCCC TGTCCCGAGACGTGCCGGTCAAGCACTTCTTTCGCGCATTTGCATTCTTG CTTGGTGGGCTGGAGTTTGTTTTCCTTATTCTGGTTTTCGTCTTTTGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig591:58..1057+

>mRNA_P-wetherbeei_contig591.1.1 ID=mRNA_P-wetherbeei_contig591.1.1|Name=mRNA_P-wetherbeei_contig591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig591:58..1057+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGCATCCATGCTGGCTGCCGAGTACAATTTGCACGCGGCGGCTCA
GTACATTCGCGTGTGCAGACCCTCCAACTGGACCTGCACCGGCTGGTGCT
CTCCCTGCCCGGATCCAACCCACAAGCTGGTCGGCACAGGAGGCGGCAAT
GCGACCCAAGTTCAAGACCGCTTTCGACGGTACTTTCATTTCATCGTGTA
CAGGACCAGGGTCGTCTGCCAAGGCTTCATGCGCAAGGAGGATACCGCGG
CGTTCACTTGGGCCTTCGACAACTACGTGGATTGGTGCTGCGATGGCGGA
TTGTGCCCGCCAGGCGTCATCCTCACCGACGACTGCAAGGCGGCGGCAGC
GGCGATCAAAACGAGCATGCCCAGCACCAATCACCTCCTCTGCTCTTGGC
ATCTCTACAAGAATCTCAAGGAGCACACCGACAAGCATATTCGTGGCGAT
CCCAATCTCCTGCGCGCCTGCCGCGCAGCCTTCCGCAAAGCAGAGTACGC
GGCGACACAGGAAGAGTTCGACGCGTGCTGGCGCGACCTCATGGTGAGTG
GTTTTGATTGA
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