mRNA_P-wetherbeei_contig59093.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59093.1.1
Unique NamemRNA_P-wetherbeei_contig59093.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A346A4B4_9HYPH (Lytic murein transglycosylase n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A4B4_9HYPH)

HSP 1 Score: 288 bits (736), Expect = 2.920e-94
Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 1
Query:    1 GKGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPLG-RPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPTA 498
            GKGWQRGERWAYEV+APAN DC++GTPETTMPIG+WVKRG+  L  R L+A   A+PASLLQPEGSYGP+FL PKNYFVLK+YNYSDLYVLFVGHLSDRIAG  AF+TPWSK  Q++T++VETMQ+RLTALGLYKDKIDGKAGMLTRAALGAYQK+NGLKVDCWPTA
Sbjct:  233 GKGWQRGERWAYEVKAPANGDCTMGTPETTMPIGEWVKRGYLLLPPRKLTAEALAMPASLLQPEGSYGPSFLTPKNYFVLKEYNYSDLYVLFVGHLSDRIAGGGAFMTPWSKAEQMRTSDVETMQQRLTALGLYKDKIDGKAGMLTRAALGAYQKRNGLKVDCWPTA 399          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A371BB70_9HYPH (Lytic murein transglycosylase n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371BB70_9HYPH)

HSP 1 Score: 280 bits (715), Expect = 4.940e-91
Identity = 135/167 (80.84%), Postives = 147/167 (88.02%), Query Frame = 1
Query:    1 GKGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPLG-RPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPTA 498
            G+GW RGERWAYEVRAP N DCSIGTPET MPIG+WVKRG+     R L+A E ALPASLLQPEG YGP+FL PKNYFV+KDYN+SDLYVLFVGHL+DRIAGAKAF+TPWSK+ QLKT +VE MQKRLT LGLY+DKIDGKAGMLTRAALG YQK NGLKVDCWPTA
Sbjct:  237 GRGWARGERWAYEVRAPENGDCSIGTPETKMPIGEWVKRGYLLTPPRKLTAQELALPASLLQPEGIYGPSFLTPKNYFVIKDYNFSDLYVLFVGHLADRIAGAKAFMTPWSKSDQLKTKDVEAMQKRLTDLGLYRDKIDGKAGMLTRAALGQYQKANGLKVDCWPTA 403          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A0Q7TYG7_9HYPH (Lytic transglycosylase n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TYG7_9HYPH)

HSP 1 Score: 266 bits (680), Expect = 9.580e-86
Identity = 128/168 (76.19%), Postives = 144/168 (85.71%), Query Frame = 1
Query:    1 GKGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPLGRPLSAAEQAL--PASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPTA 498
            G+GWQRGERWAYEVRAP N DCS+G PE   PIG+WV+RG+  L  P    ++AL  PASLLQPEGSYGP+FL  KNYFV+KDYN+SDLYVLFVGHLSDRIAGAK+FVTPWSK+ QLKT EVE MQ+RLT LG YKDKIDGKAGMLTRAA+G YQK+NGLKVDCWPT+
Sbjct:  237 GRGWQRGERWAYEVRAPENGDCSMGVPEVKAPIGEWVRRGYL-LIPPRKMTQEALATPASLLQPEGSYGPSFLTSKNYFVIKDYNFSDLYVLFVGHLSDRIAGAKSFVTPWSKSEQLKTKEVEAMQQRLTDLGFYKDKIDGKAGMLTRAAVGHYQKRNGLKVDCWPTS 403          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A4V1T5G9_9HYPH (Lytic murein transglycosylase (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4V1T5G9_9HYPH)

HSP 1 Score: 254 bits (649), Expect = 1.010e-83
Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 1
Query:    1 GKGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPL-GRPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPT 495
            GKGWQ G RWAYEVRAPANADCS G PE    IG+WV+ GFAP+ G+ LSA+EQA PASLLQPEGSYGPAFL  KNYFV+K+YN+SDLYVLFVGHL+DRI  A  F TPWS + QL+TA+VE MQ+ LT +GLYKDK+DG+AGM TRAALGA+QK  GLK+DCWPT
Sbjct:   40 GKGWQPGLRWAYEVRAPANADCSQGVPEVQRAIGEWVRAGFAPVRGQRLSASEQAQPASLLQPEGSYGPAFLTTKNYFVIKEYNFSDLYVLFVGHLADRIVSANTFETPWSASEQLRTADVEAMQQHLTRIGLYKDKVDGRAGMQTRAALGAFQKSAGLKLDCWPT 205          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A4Q5PKT8_9BRAD (Lytic murein transglycosylase n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A4Q5PKT8_9BRAD)

HSP 1 Score: 256 bits (655), Expect = 4.140e-82
Identity = 120/165 (72.73%), Postives = 139/165 (84.24%), Query Frame = 1
Query:    4 KGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPL-GRPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPT 495
            KGWQRG RWAYEVRAPANADC+IG PE T PIG+W++ GF P  G  +SAAEQA PASLLQPEGSYGPAFL  KNYFV+K+YN+SDLYVLFVGH++DRIAG + F TPWS   QL++ +VE MQ+RLT+LGLY DK+DGKAGM TRAALGA+QK   LKVDCWP+
Sbjct:  226 KGWQRGLRWAYEVRAPANADCTIGVPEVTRPIGEWLRAGFTPARGERVSAAEQAQPASLLQPEGSYGPAFLTTKNYFVIKEYNFSDLYVLFVGHVADRIAGGQPFATPWSATGQLRSTDVEAMQRRLTSLGLYSDKVDGKAGMKTRAALGAFQKSARLKVDCWPS 390          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A161R3U1_9BRAD (Lytic transglycosylase n=1 Tax=Tardiphaga robiniae TaxID=943830 RepID=A0A161R3U1_9BRAD)

HSP 1 Score: 256 bits (655), Expect = 5.680e-82
Identity = 121/165 (73.33%), Postives = 139/165 (84.24%), Query Frame = 1
Query:    4 KGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPL-GRPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPT 495
            KGWQRG RWAYEVRAPANADC++G PE T PIG+W++ GF P+ G  LSAAEQA PASLLQPEG YGPAFL  KNYFV+K+YN+SDLYVLFVGHLSDRIA ++ F TPWS + QL++ +VE MQ+ LT LGLY DK+DGKAGM TRAALGAYQK  GLKVDCWP+
Sbjct:  237 KGWQRGLRWAYEVRAPANADCTMGVPEVTRPIGEWIRAGFIPVRGEKLSAAEQAQPASLLQPEGIYGPAFLTTKNYFVIKEYNFSDLYVLFVGHLSDRIANSQPFATPWSASNQLRSTDVEAMQRHLTRLGLYADKMDGKAGMKTRAALGAYQKSAGLKVDCWPS 401          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A1H1W2T2_9BRAD (Lytic murein transglycosylase n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1W2T2_9BRAD)

HSP 1 Score: 256 bits (654), Expect = 9.820e-82
Identity = 120/165 (72.73%), Postives = 140/165 (84.85%), Query Frame = 1
Query:    4 KGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPL-GRPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPT 495
            KGWQ G RWAYEV+APA+ADC+ G PE T PIG+W++ GF P+ G+ LSAAEQA PASLLQPEG YGPAFL  KNYFV+K+YN+SDLYVLFVGHLSDR+   + F TPWS + QL+TA+VE MQ++LT LGLYKDK+DGKAGMLTRAALGAYQK  GLKVDCWP+
Sbjct:  243 KGWQPGVRWAYEVQAPASADCTSGVPEVTKPIGEWLREGFVPVRGQKLSAAEQAQPASLLQPEGIYGPAFLTTKNYFVIKEYNFSDLYVLFVGHLSDRMLSPQPFATPWSASTQLRTADVEAMQRQLTRLGLYKDKLDGKAGMLTRAALGAYQKSKGLKVDCWPS 407          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A1H6P2R4_9BRAD (Lytic murein transglycosylase n=8 Tax=Tardiphaga TaxID=1395974 RepID=A0A1H6P2R4_9BRAD)

HSP 1 Score: 253 bits (647), Expect = 1.080e-80
Identity = 120/165 (72.73%), Postives = 138/165 (83.64%), Query Frame = 1
Query:    4 KGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPL-GRPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPT 495
            KGWQRG RWAYEVRAPANADC++G PE T PIG+W++ GF P+ G  LSAAEQA  ASLLQPEG YGPAFL  KNYFV+K+YN+SDLYVLFVGHLSDR+A A+ F TPWS + QL++ +VE MQ+ LT LGLY DK+DGKAGM TRAALGAYQK  GLKVDCWP+
Sbjct:  243 KGWQRGLRWAYEVRAPANADCTMGVPEVTRPIGEWIRAGFIPVRGEKLSAAEQAQSASLLQPEGIYGPAFLTTKNYFVIKEYNFSDLYVLFVGHLSDRMANAQPFATPWSASNQLRSTDVEAMQRHLTRLGLYADKMDGKAGMKTRAALGAYQKSAGLKVDCWPS 407          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A0D7EH15_RHOPL (Lytic transglycosylase n=2 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A0D7EH15_RHOPL)

HSP 1 Score: 253 bits (645), Expect = 1.540e-80
Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 1
Query:    4 KGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPL-GRPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPTA 498
            KGWQ G RWAYEVRAPANADC+ G PE T PIG W++ GF P+ G  LSAAEQA PASLLQPEGSYGPAFL  KNYFV+K YN+SDLYVLFVGHLSDRIA +K F TPWS + Q++T +VETMQ+ LT LGLY DK+DGKAGM TRAALGA+QK   LK+DCWP+A
Sbjct:  230 KGWQPGLRWAYEVRAPANADCTQGVPEITKPIGQWLREGFVPVRGERLSAAEQAQPASLLQPEGSYGPAFLTTKNYFVIKQYNFSDLYVLFVGHLSDRIADSKPFATPWSASKQMRTRDVETMQRHLTRLGLYADKVDGKAGMQTRAALGAFQKSAKLKLDCWPSA 395          
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Match: A0A525IQL6_BRASZ (Lytic murein transglycosylase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IQL6_BRASZ)

HSP 1 Score: 252 bits (644), Expect = 2.590e-80
Identity = 118/165 (71.52%), Postives = 138/165 (83.64%), Query Frame = 1
Query:    4 KGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPL-GRPLSAAEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIAGAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALGAYQKKNGLKVDCWPT 495
            KGWQ G RWAYEVR PAN DC++G PE T PIG+W+  GF P+ G+ LSAAEQA PASLLQPEG YGPAFL+ +NYFV+K+YN+SDLYVLFVGHLSDR+   +AF TPWS + QL+TA+VE MQ+ LT +GLY DK+DGKAGM TRAALGAYQKK GLKVDCWP+
Sbjct:  236 KGWQPGLRWAYEVRPPANVDCTMGVPEVTKPIGEWLHDGFTPVRGQKLSAAEQAQPASLLQPEGIYGPAFLSTRNYFVIKEYNFSDLYVLFVGHLSDRMVSPQAFATPWSASTQLRTADVEAMQRHLTRIGLYADKVDGKAGMKTRAALGAYQKKAGLKVDCWPS 400          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A346A4B4_9HYPH2.920e-9482.04Lytic murein transglycosylase n=2 Tax=Pseudolabrys... [more]
A0A371BB70_9HYPH4.940e-9180.84Lytic murein transglycosylase n=2 Tax=unclassified... [more]
A0A0Q7TYG7_9HYPH9.580e-8676.19Lytic transglycosylase n=1 Tax=Pseudolabrys sp. Ro... [more]
A0A4V1T5G9_9HYPH1.010e-8372.89Lytic murein transglycosylase (Fragment) n=1 Tax=H... [more]
A0A4Q5PKT8_9BRAD4.140e-8272.73Lytic murein transglycosylase n=4 Tax=Bradyrhizobi... [more]
A0A161R3U1_9BRAD5.680e-8273.33Lytic transglycosylase n=1 Tax=Tardiphaga robiniae... [more]
A0A1H1W2T2_9BRAD9.820e-8272.73Lytic murein transglycosylase n=1 Tax=Bradyrhizobi... [more]
A0A1H6P2R4_9BRAD1.080e-8072.73Lytic murein transglycosylase n=8 Tax=Tardiphaga T... [more]
A0A0D7EH15_RHOPL1.540e-8072.89Lytic transglycosylase n=2 Tax=Rhodopseudomonas pa... [more]
A0A525IQL6_BRASZ2.590e-8071.52Lytic murein transglycosylase n=1 Tax=Bradyrhizobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59093contigP-wetherbeei_contig59093:3..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog196490.AUEZ01000019_gene496
Preferred nameMA20_01345
PFAMsPG_binding_1,SLT_2
Model size498
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.46e-81
EggNOG OGsCOG2951@1|root,COG3409@1|root,COG2951@2|Bacteria,COG3409@2|Bacteria,1MUZ3@1224|Proteobacteria,2TRD2@28211|Alphaproteobacteria,3JSF9@41294|Bradyrhizobiaceae
DescriptionTransglycosylase SLT domain
Cds size498
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.6589832-CDS-P-wetherbeei_contig59093:2..5001683186873.6589832-CDS-P-wetherbeei_contig59093:2..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59093 3..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59093.1.1prot_P-wetherbeei_contig59093.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59093 3..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59093.1.1

>prot_P-wetherbeei_contig59093.1.1 ID=prot_P-wetherbeei_contig59093.1.1|Name=mRNA_P-wetherbeei_contig59093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
GKGWQRGERWAYEVRAPANADCSIGTPETTMPIGDWVKRGFAPLGRPLSA
AEQALPASLLQPEGSYGPAFLAPKNYFVLKDYNYSDLYVLFVGHLSDRIA
GAKAFVTPWSKNAQLKTAEVETMQKRLTALGLYKDKIDGKAGMLTRAALG
AYQKKNGLKVDCWPTA
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mRNA from alignment at P-wetherbeei_contig59093:3..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59093.1.1 ID=mRNA_P-wetherbeei_contig59093.1.1|Name=mRNA_P-wetherbeei_contig59093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59093:3..500+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAAGGCTGGCAGCGCGGCGAGCGCTGGGCCTACGAGGTGCGGGCGCC GGCGAACGCCGATTGCAGCATTGGCACGCCGGAGACGACGATGCCGATCG GCGACTGGGTCAAGCGGGGCTTTGCGCCGCTCGGCCGGCCGCTCAGCGCT GCGGAGCAGGCGTTGCCGGCGTCGCTGCTGCAGCCGGAAGGCAGCTACGG CCCGGCCTTCCTGGCGCCGAAAAACTATTTCGTGCTGAAGGACTACAATT ACTCGGATCTCTACGTGCTGTTCGTCGGCCACCTGAGCGACCGCATCGCG GGGGCCAAGGCTTTCGTCACGCCGTGGAGCAAGAACGCGCAGCTCAAGAC CGCGGAGGTGGAGACGATGCAGAAGCGTCTCACGGCGTTGGGGCTGTACA AGGACAAGATCGACGGCAAGGCCGGGATGCTGACGCGCGCGGCGCTCGGC GCCTACCAGAAAAAGAACGGCCTCAAGGTCGACTGCTGGCCGACGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59093:3..500+

>mRNA_P-wetherbeei_contig59093.1.1 ID=mRNA_P-wetherbeei_contig59093.1.1|Name=mRNA_P-wetherbeei_contig59093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59093:3..500+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAAGGCTGGCAGCGCGGCGAGCGCTGGGCCTACGAGGTGCGGGCGCC
GGCGAACGCCGATTGCAGCATTGGCACGCCGGAGACGACGATGCCGATCG
GCGACTGGGTCAAGCGGGGCTTTGCGCCGCTCGGCCGGCCGCTCAGCGCT
GCGGAGCAGGCGTTGCCGGCGTCGCTGCTGCAGCCGGAAGGCAGCTACGG
CCCGGCCTTCCTGGCGCCGAAAAACTATTTCGTGCTGAAGGACTACAATT
ACTCGGATCTCTACGTGCTGTTCGTCGGCCACCTGAGCGACCGCATCGCG
GGGGCCAAGGCTTTCGTCACGCCGTGGAGCAAGAACGCGCAGCTCAAGAC
CGCGGAGGTGGAGACGATGCAGAAGCGTCTCACGGCGTTGGGGCTGTACA
AGGACAAGATCGACGGCAAGGCCGGGATGCTGACGCGCGCGGCGCTCGGC
GCCTACCAGAAAAAGAACGGCCTCAAGGTCGACTGCTGGCCGACGGCG
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