mRNA_P-wetherbeei_contig5909.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5909.1.1
Unique NamemRNA_P-wetherbeei_contig5909.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5909contigP-wetherbeei_contig5909:299..3465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2384
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionNucleoporin FG repeat
Ec32 orthologEc-06_010380.1
Cds size2133
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.5778265-UTR-P-wetherbeei_contig5909:298..4511683186873.5778265-UTR-P-wetherbeei_contig5909:298..451Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5909 299..451 -
1683186873.6122532-UTR-P-wetherbeei_contig5909:3367..34651683186873.6122532-UTR-P-wetherbeei_contig5909:3367..3465Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5909 3368..3465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.588788-CDS-P-wetherbeei_contig5909:451..17561683186873.588788-CDS-P-wetherbeei_contig5909:451..1756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5909 452..1756 -
1683186873.602735-CDS-P-wetherbeei_contig5909:2539..33671683186873.602735-CDS-P-wetherbeei_contig5909:2539..3367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5909 2540..3367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5909.1.1prot_P-wetherbeei_contig5909.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5909 452..3367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5909.1.1

>prot_P-wetherbeei_contig5909.1.1 ID=prot_P-wetherbeei_contig5909.1.1|Name=mRNA_P-wetherbeei_contig5909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=711bp
MAFSFAAPAPAGGGFSFGTQQAGGLFGAPAPAPATGGAFGGFGTQAAAPT
SGFGGFGSPAPAPAAGSGGFGGFGTPAPAPAAGGFGTAGGGLFGQVPAPA
PGGGLFGAPMPAPSGGVFGGFSSPAPAPAPGGFGTAGGGLFGAPMPAPAP
SGGLFGGFGAPAPAPGGFGAAPSAFRAPAPLAFGGLSGGQLQQQQFQQQL
QQQQQQQQLATLAPETMFTALPEAAKRVIDALYAEMTRQQQVGAHLAKAD
GAWLDGLQHEADGLRQELTALENMQKVEKVELKELKEVADAVVRDAENYA
KAGVRELQRASGSALQTREDLPSRFMWETVHRFESRLDRYADEIDEIEQQ
LVYASGGGFGSGFSGFGDGFGKGGVPLAIAADLVDAAAGVGAVGGSGWGV
GYGSGRGGSGLGSGGSGAAAGAVVAGAASAATYGQRGRVTPEHLAHLLRT
QHKAFMATAGHVAAVHEQMNALREEYVARTGRDPFAAADRRVEDEERAKM
REMRAARSPPQQPRQQQPGMQPGMQQPGMQQQPGLFGGAGVAPAPLSLFG
APAPAPGPSGGLLSGFGGFGAAPAPAPGFGGGGGGSLFGSTPAAAPTGAG
LFGAAAPSPATAGGLFGAATTAPAVGGLFGTPAAPAPAGSVFGGGGGFGG
FGASAAAAPAAGGSLFGTVAPLAASQSSSNIFGLSNGGGALGAGKKKPTS
STSKKGGRSR*
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mRNA from alignment at P-wetherbeei_contig5909:299..3465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5909.1.1 ID=mRNA_P-wetherbeei_contig5909.1.1|Name=mRNA_P-wetherbeei_contig5909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3167bp|location=Sequence derived from alignment at P-wetherbeei_contig5909:299..3465- (Phaeothamnion wetherbeei SAG_119_79)
TCGAATCAACTTTAATAATCAGCCCGTAAACCCCGTTGCAACGCGTTCTT
CGTTCGTTTTTTGAAAGTCTTTTGGGCCACGGGGAGAGATATAGCGACAT
GGCCTTCTCGTTTGCAGCCCCTGCTCCGGCTGGCGGCGGCTTCAGCTTTG
GGACGCAGCAAGCTGGAGGTCTATTCGGCGCCCCTGCGCCGGCTCCGGCT
ACCGGTGGCGCCTTTGGCGGCTTTGGAACTCAAGCTGCAGCACCGACCTC
AGGCTTTGGGGGCTTTGGCTCACCCGCCCCTGCTCCCGCTGCGGGATCCG
GTGGTTTTGGCGGCTTCGGTACCCCAGCGCCTGCTCCTGCCGCCGGCGGC
TTCGGAACCGCCGGCGGAGGCCTCTTTGGGCAAGTTCCGGCGCCCGCACC
AGGCGGCGGCCTCTTCGGCGCGCCGATGCCGGCTCCAAGCGGCGGTGTAT
TCGGTGGCTTCAGCTCTCCCGCGCCGGCGCCTGCGCCGGGCGGCTTTGGA
ACTGCCGGCGGAGGCCTCTTTGGCGCGCCCATGCCTGCGCCGGCGCCGAG
CGGCGGCCTCTTCGGTGGCTTCGGCGCTCCCGCCCCCGCGCCCGGCGGTT
TTGGTGCTGCGCCGTCGGCCTTCAGAGCACCGGCGCCGTTGGCGTTTGGG
GGGCTGAGCGGAGGCCAGCTGCAGCAGCAGCAGTTCCAGCAGCAACTGCA
GCAGCAACAACAGCAGCAGCAGCTCGCGACGCTGGCGCCGGAAACGATGT
TCACGGCGCTGCCGGAGGCGGCGAAGCGGGTGATCGACGCGCTCTACGCG
GAGATGACACGGCAGCAGCAGGTCGGCGCGCACCTGGCAAAGGCGGACGG
CGCGTGGCTGGACGGACTCCAGCACGAGGCGGACGGACTCCGCCAGGAGC
TCACAGCGCTCGAGAACATGCAGAAGGTCAGTTCAATCAGTCAGCAGGGA
GGGAGGAATGGAGGGAGGGAGAGGTTTCTTTGTCTGTTTGGAGTTTGTTA
TCCTCTTTTCTCCCTACTTTAGACGAAGGGGGCTTGTCTGAGTTCGGCAG
GGTTTCGGTTAGAGTGCTCCGATTTAAAATTCTCTCCGTCTCATTGTTTG
GCGGTTCTGGTCCTCCTGCCCTGCAAGTTATCACCAAGCGTCAGAGCGGC
CTCCTCTTTGTGAAAAACGGGGCCCGGAAGCAGTCACGGAACAGGAAGTG
GCGTGCTCTCCTGTCTTTTCCTCTCTCTTTTCAGATTTGGGTGGCGTTGG
TATTTCAGGGGCCTTTGACGTCCAACAAACGAACACAATTGGATATTGCC
ATCCTTTTAGCATCAAAATGCGCGCCAAAATGCGCTCGACTCTTCGGCCG
GCTTCTCGAGTGATGCGAAGACCGCTCATGGATAGAGATTCCGCACATTT
TTGGGTAATGACGTGTGCCCATTTCTGAGCTTCTTGTCTTTTCTTCGCTC
ACCTGTCCACAGCCACTGCTTTCCGCTACGGGCACCGCTTGCGATCGGTG
CCGCCTGTGTTTGCCGCCTGTGTTTGCCGCCTGTGTTTGCCGCCCGTGTT
TGCCGCCGTTCGCTGCTGTTCGACGCCGCCGCCTGTGTTTGCCGCCGTTC
GCTGCTGTTCGACGCCGCCGCCCAAACCCGCCGCTTTCCCCTCTCGCCCC
TACCTCGCAAACACTGGATTTAACGGCGGTAACCAACCAACAAACAAACA
AACGAGCAGGTGGAGAAGGTGGAGCTCAAGGAGCTCAAGGAGGTGGCCGA
TGCAGTCGTCCGCGACGCCGAAAACTACGCCAAGGCGGGTGTCCGGGAGC
TGCAGCGGGCGTCGGGCTCGGCGCTGCAGACGCGAGAGGACCTGCCGTCT
CGCTTCATGTGGGAAACGGTGCACCGCTTCGAGAGCCGCCTCGACCGCTA
CGCCGACGAAATCGATGAGATCGAGCAGCAGCTGGTGTACGCGAGCGGTG
GCGGGTTCGGCAGCGGTTTCAGCGGTTTCGGCGACGGCTTCGGCAAGGGC
GGGGTGCCGCTGGCAATCGCGGCGGACTTGGTCGATGCGGCGGCCGGTGT
CGGTGCTGTTGGTGGCAGCGGTTGGGGCGTCGGCTACGGCAGCGGCAGGG
GCGGCAGCGGCCTCGGCAGTGGCGGCAGCGGCGCGGCGGCGGGAGCGGTG
GTGGCGGGGGCCGCGTCGGCGGCGACGTACGGTCAGCGGGGCCGCGTTAC
GCCTGAGCATCTGGCGCACCTCCTGCGGACGCAGCACAAGGCGTTTATGG
CAACAGCGGGCCACGTGGCGGCGGTTCACGAGCAGATGAACGCCCTGCGA
GAGGAGTACGTCGCCCGCACCGGCCGCGACCCGTTCGCGGCGGCCGACCG
CAGGGTGGAAGACGAGGAGCGCGCGAAGATGAGGGAGATGCGGGCGGCAA
GGTCACCGCCGCAGCAGCCGCGGCAGCAGCAGCCAGGGATGCAGCCAGGA
ATGCAGCAGCCGGGAATGCAGCAGCAGCCGGGACTCTTTGGTGGTGCGGG
CGTCGCGCCGGCACCGTTGTCGCTGTTTGGGGCGCCCGCCCCCGCGCCCG
GGCCAAGCGGCGGGCTGCTGAGCGGATTCGGCGGCTTCGGAGCGGCCCCG
GCCCCGGCGCCGGGGTTTGGCGGCGGGGGCGGCGGCAGTCTCTTCGGCTC
TACTCCAGCCGCGGCGCCGACGGGCGCAGGTCTGTTTGGGGCTGCCGCTC
CATCGCCTGCAACGGCAGGAGGTTTGTTCGGCGCCGCCACGACGGCACCG
GCCGTGGGGGGACTCTTTGGAACGCCGGCGGCTCCCGCGCCGGCAGGGTC
CGTGTTCGGCGGCGGCGGCGGCTTCGGCGGCTTCGGCGCTTCCGCCGCTG
CGGCCCCGGCAGCCGGAGGGTCGCTGTTCGGTACGGTGGCACCGCTGGCG
GCCTCACAATCGAGCAGCAACATTTTTGGGCTGAGCAACGGTGGGGGCGC
ACTGGGGGCCGGCAAGAAGAAGCCAACATCCAGCACCAGCAAGAAAGGCG
GCAGAAGCAGATGAGACATATAATTGCCGGCCGGCTCTGCGTTTCAGGCG
TCCGCAGCAGCTACGGTCGGTAATGAAAAGCCTTCCTCTTTCCTCGAGTT
TCTCTGGCCGACAGGACACGCCTGTGAACGGGGAGGAAGGTTAGAAAGAT
TTAACACTGAACTTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5909:299..3465-

>mRNA_P-wetherbeei_contig5909.1.1 ID=mRNA_P-wetherbeei_contig5909.1.1|Name=mRNA_P-wetherbeei_contig5909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2133bp|location=Sequence derived from alignment at P-wetherbeei_contig5909:299..3465- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTCTCGTTTGCAGCCCCTGCTCCGGCTGGCGGCGGCTTCAGCTT
TGGGACGCAGCAAGCTGGAGGTCTATTCGGCGCCCCTGCGCCGGCTCCGG
CTACCGGTGGCGCCTTTGGCGGCTTTGGAACTCAAGCTGCAGCACCGACC
TCAGGCTTTGGGGGCTTTGGCTCACCCGCCCCTGCTCCCGCTGCGGGATC
CGGTGGTTTTGGCGGCTTCGGTACCCCAGCGCCTGCTCCTGCCGCCGGCG
GCTTCGGAACCGCCGGCGGAGGCCTCTTTGGGCAAGTTCCGGCGCCCGCA
CCAGGCGGCGGCCTCTTCGGCGCGCCGATGCCGGCTCCAAGCGGCGGTGT
ATTCGGTGGCTTCAGCTCTCCCGCGCCGGCGCCTGCGCCGGGCGGCTTTG
GAACTGCCGGCGGAGGCCTCTTTGGCGCGCCCATGCCTGCGCCGGCGCCG
AGCGGCGGCCTCTTCGGTGGCTTCGGCGCTCCCGCCCCCGCGCCCGGCGG
TTTTGGTGCTGCGCCGTCGGCCTTCAGAGCACCGGCGCCGTTGGCGTTTG
GGGGGCTGAGCGGAGGCCAGCTGCAGCAGCAGCAGTTCCAGCAGCAACTG
CAGCAGCAACAACAGCAGCAGCAGCTCGCGACGCTGGCGCCGGAAACGAT
GTTCACGGCGCTGCCGGAGGCGGCGAAGCGGGTGATCGACGCGCTCTACG
CGGAGATGACACGGCAGCAGCAGGTCGGCGCGCACCTGGCAAAGGCGGAC
GGCGCGTGGCTGGACGGACTCCAGCACGAGGCGGACGGACTCCGCCAGGA
GCTCACAGCGCTCGAGAACATGCAGAAGGTGGAGAAGGTGGAGCTCAAGG
AGCTCAAGGAGGTGGCCGATGCAGTCGTCCGCGACGCCGAAAACTACGCC
AAGGCGGGTGTCCGGGAGCTGCAGCGGGCGTCGGGCTCGGCGCTGCAGAC
GCGAGAGGACCTGCCGTCTCGCTTCATGTGGGAAACGGTGCACCGCTTCG
AGAGCCGCCTCGACCGCTACGCCGACGAAATCGATGAGATCGAGCAGCAG
CTGGTGTACGCGAGCGGTGGCGGGTTCGGCAGCGGTTTCAGCGGTTTCGG
CGACGGCTTCGGCAAGGGCGGGGTGCCGCTGGCAATCGCGGCGGACTTGG
TCGATGCGGCGGCCGGTGTCGGTGCTGTTGGTGGCAGCGGTTGGGGCGTC
GGCTACGGCAGCGGCAGGGGCGGCAGCGGCCTCGGCAGTGGCGGCAGCGG
CGCGGCGGCGGGAGCGGTGGTGGCGGGGGCCGCGTCGGCGGCGACGTACG
GTCAGCGGGGCCGCGTTACGCCTGAGCATCTGGCGCACCTCCTGCGGACG
CAGCACAAGGCGTTTATGGCAACAGCGGGCCACGTGGCGGCGGTTCACGA
GCAGATGAACGCCCTGCGAGAGGAGTACGTCGCCCGCACCGGCCGCGACC
CGTTCGCGGCGGCCGACCGCAGGGTGGAAGACGAGGAGCGCGCGAAGATG
AGGGAGATGCGGGCGGCAAGGTCACCGCCGCAGCAGCCGCGGCAGCAGCA
GCCAGGGATGCAGCCAGGAATGCAGCAGCCGGGAATGCAGCAGCAGCCGG
GACTCTTTGGTGGTGCGGGCGTCGCGCCGGCACCGTTGTCGCTGTTTGGG
GCGCCCGCCCCCGCGCCCGGGCCAAGCGGCGGGCTGCTGAGCGGATTCGG
CGGCTTCGGAGCGGCCCCGGCCCCGGCGCCGGGGTTTGGCGGCGGGGGCG
GCGGCAGTCTCTTCGGCTCTACTCCAGCCGCGGCGCCGACGGGCGCAGGT
CTGTTTGGGGCTGCCGCTCCATCGCCTGCAACGGCAGGAGGTTTGTTCGG
CGCCGCCACGACGGCACCGGCCGTGGGGGGACTCTTTGGAACGCCGGCGG
CTCCCGCGCCGGCAGGGTCCGTGTTCGGCGGCGGCGGCGGCTTCGGCGGC
TTCGGCGCTTCCGCCGCTGCGGCCCCGGCAGCCGGAGGGTCGCTGTTCGG
TACGGTGGCACCGCTGGCGGCCTCACAATCGAGCAGCAACATTTTTGGGC
TGAGCAACGGTGGGGGCGCACTGGGGGCCGGCAAGAAGAAGCCAACATCC
AGCACCAGCAAGAAAGGCGGCAGAAGCAGATGA
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