mRNA_P-wetherbeei_contig59082.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59082.1.1
Unique NamemRNA_P-wetherbeei_contig59082.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: UPI001D0C4064 (WG repeat-containing protein n=1 Tax=Winogradskyella sp. E313 TaxID=2816852 RepID=UPI001D0C4064)

HSP 1 Score: 186 bits (473), Expect = 9.630e-58
Identity = 88/155 (56.77%), Postives = 116/155 (74.84%), Query Frame = 1
Query:    4 SCGNPKSDYLLKVYE-QPGEAGA-AGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVM-TQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
            +C + K  YL+K YE +  E G  +GY++ KGDT+IP GKY +CYTDTI+ FG+V+  +  ++IGIDKN  ELFEVF +DNGP+YV  GLFRI+K+ KIGYA+  GKI IEP +DCAYPF+ G AKVS NC   +DGEH+ W+S++W  I K+GK
Sbjct:   16 ACSSKKDSYLIKFYEGEFDEIGVPSGYLNSKGDTIIPIGKYYYCYTDTIRDFGMVIRNKTGKIIGIDKNGTELFEVFKYDNGPEYVESGLFRIIKNGKIGYANSQGKIVIEPNFDCAYPFKGGFAKVSDNCEIIKDGEHSLWKSENWYQITKNGK 170          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: A0A3D2IFN4_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D2IFN4_9BACT)

HSP 1 Score: 185 bits (469), Expect = 3.900e-57
Identity = 86/154 (55.84%), Postives = 117/154 (75.97%), Query Frame = 1
Query:    4 SCGNPKSDYLLKVYE-QPGEAGA-AGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDK-RLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDG 456
            +C +   +YL+K YE +  E G  +GY+S KGDT+IP GKY +CYTDTI+ FG+V+ Q   +++GID+N  EL++VF +DNGPDYV  GLFRI+K  KIGYAD NGKI I+P+++CA+PF+  +AKVS NC T QDGEH+ W+SD+W  I K+G
Sbjct:   16 ACSSKNENYLIKFYEGEFDEIGVPSGYLSSKGDTIIPIGKYFYCYTDTIRNFGMVIEQGTGKILGIDQNGTELYQVFNYDNGPDYVKSGLFRIIKQGKIGYADSNGKIVIQPRFNCAHPFKEDLAKVSDNCETIQDGEHSIWKSDNWYHITKNG 169          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: A0A3B0RR23_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0RR23_9ZZZZ)

HSP 1 Score: 183 bits (464), Expect = 2.110e-56
Identity = 86/156 (55.13%), Postives = 115/156 (73.72%), Query Frame = 1
Query:    4 SCGNPKSDYLLKV----YEQPGEAGAAGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
            SC   KS+YL+K+    +++ G    +GY++ +GDT+IP GKY +CYTDTI+ FG+V+ +   +IGIDKN  ELFEV+ FDNGPDY+  GLFRI+K++ IGYA+ NG+I IEP Y CA+PFENG AKVS  CT  + GEH+ WES+ W  I+K GK
Sbjct:   16 SCNESKSNYLIKIIVGEFDEHGTP--SGYINKEGDTIIPIGKYFYCYTDTIRDFGMVIKKGGPIIGIDKNDNELFEVYNFDNGPDYIKGGLFRIIKNDLIGYANINGEIIIEPAYKCAFPFENGKAKVSNICTKKRIGEHSYWESNKWFYINKKGK 169          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: A0A553GN99_9BACT (WG repeat-containing protein n=1 Tax=Carboxylicivirga sp. M1479 TaxID=2594476 RepID=A0A553GN99_9BACT)

HSP 1 Score: 177 bits (450), Expect = 3.520e-54
Identity = 81/149 (54.36%), Postives = 111/149 (74.50%), Query Frame = 1
Query:   19 KSDYLLKVYEQPG-EAGA-AGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
            K DYL+KV+E    E G  +GYV+ +GDT+I  GKY +CYTDT+K   IV+ +    + ID+NQ+ELFE+FW+DNGPD + +GLFRI K+ KIGYA+ +G+I I+PQY CA+PF++G AKV+ NC T+  GE++ W+SDHW  I K GK
Sbjct:   28 KEDYLIKVFEGASDEVGVKSGYVNSRGDTIIALGKYYYCYTDTLKNLAIVLKKGGACVAIDRNQRELFELFWYDNGPDDIVEGLFRIKKNGKIGYANLDGEIVIKPQYACAFPFKDGKAKVAYNCNTSSVGEYSKWDSDHWIYIDKSGK 176          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: A0A3S3W6F0_9SPHI (WG repeat-containing protein n=1 Tax=Mucilaginibacter gilvus TaxID=2305909 RepID=A0A3S3W6F0_9SPHI)

HSP 1 Score: 176 bits (446), Expect = 1.010e-53
Identity = 83/156 (53.21%), Postives = 105/156 (67.31%), Query Frame = 1
Query:    1 LSCGNPK---SDYLLKVYEQPGEAGAAGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
            LS   PK   +DYL ++ +    +G  GY+  KGDT+IP GKY  CYTDT KTF +V       + ID+++K LF+VF FDNGPDY S+G FRI+ +NKIGYAD  GK+ I+PQY CA+PF+N  A+VS NC    DGEH TW+SD W  I K GK
Sbjct:   12 LSACQPKHAANDYLYRIADTV--SGDYGYIDAKGDTIIPFGKYPTCYTDTFKTFALVTNTAMGFVAIDRHEKVLFKVFPFDNGPDYPSEGYFRIIDNNKIGYADTTGKVAIQPQYACAFPFKNDTARVSNNCKVIADGEHFTWQSDSWYYIDKTGK 165          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: UPI0016535377 (WG repeat-containing protein n=1 Tax=Lewinella lacunae TaxID=1517758 RepID=UPI0016535377)

HSP 1 Score: 176 bits (445), Expect = 1.680e-53
Identity = 84/156 (53.85%), Postives = 113/156 (72.44%), Query Frame = 1
Query:    1 LSCGNPKSDYLLKVYE-QPGEAGA-AGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDK-RLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
             +C +P   YL+K YE +  E GA +GY++  GDT+IP+GKY + YTDTI+ FG+VM  +  +++GI++N  ELFEVF +DNGPDYV+ GLFRI+KD KIGYA+ +G+I I P + CAYPFE   AKV+ NC T   GEH++W SD W  I +DGK
Sbjct:   15 FACSSPADGYLVKFYEGEFDEMGAPSGYLNASGDTIIPSGKYFYAYTDTIRDFGMVMEDESGKILGINQNGTELFEVFRYDNGPDYVASGLFRIIKDGKIGYANPSGEIVIAPNFACAYPFEGDFAKVADNCETEIIGEHSSWVSDGWYQIGRDGK 170          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: A0A8H2LBP0_9FLAO (WG repeat-containing protein n=2 Tax=Bizionia TaxID=283785 RepID=A0A8H2LBP0_9FLAO)

HSP 1 Score: 176 bits (445), Expect = 1.730e-53
Identity = 81/156 (51.92%), Postives = 113/156 (72.44%), Query Frame = 1
Query:    1 LSCGNPKSDYLLKV-YEQPGEAGAA-GYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDK-RLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
            ++C + K  YL+K       + GA+ GY++ KGD +IP GKY +C+TDTI+  G+V+ ++  R++GID+N  E+FEVF +DNGPD+V  GLFRI+K+ KIGYA+  G++ IEPQ++CAYPFE   AKVS  C T  DGE+T WES+HW  I +DGK
Sbjct:   15 VACTSNKDYYLVKFSLSNSDKTGASSGYMNSKGDLIIPVGKYDYCFTDTIRDLGMVVEKETGRILGIDRNANEIFEVFKYDNGPDFVESGLFRILKNGKIGYANTKGEVIIEPQFECAYPFEGHFAKVSNTCKTVNDGEYTAWESEHWYRISRDGK 170          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: A0A4Q1JJC9_9BACT (WG repeat-containing protein n=1 Tax=Ancylomarina salipaludis TaxID=2501299 RepID=A0A4Q1JJC9_9BACT)

HSP 1 Score: 175 bits (443), Expect = 5.920e-53
Identity = 81/149 (54.36%), Postives = 111/149 (74.50%), Query Frame = 1
Query:   19 KSDYLLKVYE-QPGEAGA-AGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
            K+D L+KV+  +  E G  +GYV++ GDT+IP GKY +CYTDT++ + IV+ +   LI IDKN +ELFE+FWFDNGPD +S+GLFRI K+ KIGYA++ G+I I PQ+DCA+PF+NG AKVS +C    + EH  WES++W  I + GK
Sbjct:   28 KNDDLIKVFVGEFDEVGVESGYVNIAGDTIIPIGKYHYCYTDTLRNYAIVLRKQGGLIAIDKNDQELFEIFWFDNGPDPISEGLFRIKKNGKIGYANKYGEIIIVPQFDCAFPFKNGKAKVSNDCRIIPEDEHKRWESENWFYIDQTGK 176          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: UPI001D18E774 (WG repeat-containing protein n=2 Tax=Leeuwenhoekiella sp. Mr9 TaxID=2890320 RepID=UPI001D18E774)

HSP 1 Score: 172 bits (436), Expect = 4.020e-52
Identity = 80/155 (51.61%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    4 SCGNPKSDYLLKVYE-QPGEAGA-AGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVM-TQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHKDGK 459
            +C + + +YL+K +E +  E G  +GY++ KGDT+IP GKY +CYTDTI+ FG+V+  +  +++GIDKN  ELF+VF +DNGPDYV  G FRI+K+ KIGYA+  GK+ IEP ++CAYPF+   A+VS NC T + GEH+ W+S++W  I K+GK
Sbjct:   16 ACSSKEDNYLIKFHEGEFDEIGVPSGYLNSKGDTIIPIGKYYYCYTDTIRDFGMVIENKTGKILGIDKNGTELFQVFRYDNGPDYVESGPFRIIKNGKIGYANPQGKVIIEPNFECAYPFKGDFAEVSDNCETIKVGEHSMWKSENWYQITKNGK 170          
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Match: UPI0017469B37 (WG repeat-containing protein n=1 Tax=Mucilaginibacter rigui TaxID=534635 RepID=UPI0017469B37)

HSP 1 Score: 167 bits (422), Expect = 4.320e-50
Identity = 80/153 (52.29%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 SCGNPKSDYLLKVYEQPGEAGAAGYVSVKGDTVIPAGKYAHCYTDTIKTFGIVMTQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYADENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDG-EHTTWESDHWEVIHKDGK 459
            +C    ++YL +V +    +GA+GY+ V+ DTVIP GKY  CYTDT K    V+ +  RLI IDK+Q  LFE + FDNGPDY  +G +RI+K+NK+GYAD NG++ I+PQ+ CAYPF+ G AKVS NC T   G EH  WES  W  I K GK
Sbjct:   14 ACKRQSNNYLYRVEDTL--SGASGYIDVRHDTVIPLGKYKICYTDTFKKVAFVVNRQNRLIAIDKHQNVLFEPYLFDNGPDYEVEGYYRIIKNNKLGYADTNGRVVIKPQFGCAYPFKKGRAKVSFNCKTVPAGDEHFAWESSDWFYIDKTGK 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D0C40649.630e-5856.77WG repeat-containing protein n=1 Tax=Winogradskyel... [more]
A0A3D2IFN4_9BACT3.900e-5755.84Uncharacterized protein n=2 Tax=Bacteroidetes/Chlo... [more]
A0A3B0RR23_9ZZZZ2.110e-5655.13Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A553GN99_9BACT3.520e-5454.36WG repeat-containing protein n=1 Tax=Carboxylicivi... [more]
A0A3S3W6F0_9SPHI1.010e-5353.21WG repeat-containing protein n=1 Tax=Mucilaginibac... [more]
UPI00165353771.680e-5353.85WG repeat-containing protein n=1 Tax=Lewinella lac... [more]
A0A8H2LBP0_9FLAO1.730e-5351.92WG repeat-containing protein n=2 Tax=Bizionia TaxI... [more]
A0A4Q1JJC9_9BACT5.920e-5354.36WG repeat-containing protein n=1 Tax=Ancylomarina ... [more]
UPI001D18E7744.020e-5251.61WG repeat-containing protein n=2 Tax=Leeuwenhoekie... [more]
UPI0017469B374.320e-5052.29WG repeat-containing protein n=1 Tax=Mucilaginibac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59082contigP-wetherbeei_contig59082:40..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog755732.Fluta_0630
PFAMsWG_beta_rep
Model size462
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.11e-45
EggNOG OGs29Y6K@1|root,30K03@2|Bacteria,4PGXF@976|Bacteroidetes,1IEKQ@117743|Flavobacteriia,2PBXX@246874|Cryomorphaceae
DescriptionWG containing repeat
Cds size462
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.5481606-CDS-P-wetherbeei_contig59082:39..5011683186873.5481606-CDS-P-wetherbeei_contig59082:39..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59082 40..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59082.1.1prot_P-wetherbeei_contig59082.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59082 40..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59082.1.1

>prot_P-wetherbeei_contig59082.1.1 ID=prot_P-wetherbeei_contig59082.1.1|Name=mRNA_P-wetherbeei_contig59082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
LSCGNPKSDYLLKVYEQPGEAGAAGYVSVKGDTVIPAGKYAHCYTDTIKT
FGIVMTQDKRLIGIDKNQKELFEVFWFDNGPDYVSDGLFRIVKDNKIGYA
DENGKITIEPQYDCAYPFENGVAKVSRNCTTTQDGEHTTWESDHWEVIHK
DGK*
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mRNA from alignment at P-wetherbeei_contig59082:40..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59082.1.1 ID=mRNA_P-wetherbeei_contig59082.1.1|Name=mRNA_P-wetherbeei_contig59082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig59082:40..501- (Phaeothamnion wetherbeei SAG_119_79)
CTCTCTTGCGGTAATCCTAAAAGCGATTATTTACTAAAAGTCTATGAACA ACCTGGTGAAGCAGGCGCTGCAGGTTATGTGAGTGTGAAAGGGGATACGG TAATTCCTGCCGGGAAATATGCTCACTGTTACACAGATACAATTAAAACC TTTGGAATTGTAATGACTCAGGATAAACGCCTGATCGGAATTGATAAGAA TCAAAAAGAATTGTTTGAGGTTTTCTGGTTCGACAACGGTCCTGATTACG TATCGGATGGATTATTCAGAATCGTAAAGGATAATAAGATTGGCTATGCC GATGAGAACGGTAAGATTACTATTGAGCCGCAATATGATTGCGCATATCC CTTTGAAAATGGAGTTGCAAAAGTTTCACGGAATTGCACTACAACTCAGG ACGGTGAACATACAACGTGGGAGAGTGATCATTGGGAGGTTATTCACAAA GATGGGAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59082:40..501-

>mRNA_P-wetherbeei_contig59082.1.1 ID=mRNA_P-wetherbeei_contig59082.1.1|Name=mRNA_P-wetherbeei_contig59082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig59082:40..501- (Phaeothamnion wetherbeei SAG_119_79)
CTCTCTTGCGGTAATCCTAAAAGCGATTATTTACTAAAAGTCTATGAACA
ACCTGGTGAAGCAGGCGCTGCAGGTTATGTGAGTGTGAAAGGGGATACGG
TAATTCCTGCCGGGAAATATGCTCACTGTTACACAGATACAATTAAAACC
TTTGGAATTGTAATGACTCAGGATAAACGCCTGATCGGAATTGATAAGAA
TCAAAAAGAATTGTTTGAGGTTTTCTGGTTCGACAACGGTCCTGATTACG
TATCGGATGGATTATTCAGAATCGTAAAGGATAATAAGATTGGCTATGCC
GATGAGAACGGTAAGATTACTATTGAGCCGCAATATGATTGCGCATATCC
CTTTGAAAATGGAGTTGCAAAAGTTTCACGGAATTGCACTACAACTCAGG
ACGGTGAACATACAACGTGGGAGAGTGATCATTGGGAGGTTATTCACAAA
GATGGGAAGTGA
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