mRNA_P-wetherbeei_contig59034.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59034.1.1
Unique NamemRNA_P-wetherbeei_contig59034.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59034.1.1 vs. uniprot
Match: A0A7Y4XPF5_9BACT (Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4XPF5_9BACT)

HSP 1 Score: 204 bits (519), Expect = 1.610e-62
Identity = 95/140 (67.86%), Postives = 118/140 (84.29%), Query Frame = 1 
Query:    1 SIFRGGKLAEFGQQVDGKMNIWDGYVDGYLLRMVDEKFRLSRNPYSKTKNEFFTSIKNNVADSLAKDAAQRALVRSLKDGQNLNESIENAANSGAVVSEVLGGIEINKKEYLIFDTRSGTAIAVNKDNLQDYVQSLNSSC 420
            S F+GG++AEFGQ+++G M +WDGYVDGYLLRM D ++RLSRNPYSKTKNEFFTS+KN+V DSLAK AAQ AL +S++DGQNLNESIEN+ N+G+ VSEVLG +EINKKEYLIFDT++ T ++V KD    Y QSL  +C
Sbjct:  163 SSFKGGRIAEFGQEINGTMQVWDGYVDGYLLRMTDGRYRLSRNPYSKTKNEFFTSLKNSVTDSLAKGAAQAALTKSIQDGQNLNESIENSVNAGSAVSEVLGQVEINKKEYLIFDTKNNTVVSVTKDAFPGYAQSLLQNC 302
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BLAST of mRNA_P-wetherbeei_contig59034.1.1 vs. uniprot
Match: A0A7Y4QZR1_9BACT (Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4QZR1_9BACT)

HSP 1 Score: 181 bits (460), Expect = 1.110e-53
Identity = 84/140 (60.00%), Postives = 110/140 (78.57%), Query Frame = 1 
Query:    1 SIFRGGKLAEFGQQVDGKMNIWDGYVDGYLLRMVDEKFRLSRNPYSKTKNEFFTSIKNNVADSLAKDAAQRALVRSLKDGQNLNESIENAANSGAVVSEVLGGIEINKKEYLIFDTRSGTAIAVNKDNLQDYVQSLNSSC 420
            S F+GG+L EFGQ+++G +N WDGY DGYLLR+ D +FRLSRNPYSKTKNEFFTS+KN  AD L+K+ A +AL  +  +GQN+NES+ENAA +G  V EVLG IEINKKEYLIFD+ + +   VNK NL++ ++ ++S C
Sbjct:  162 STFKGGRLVEFGQEINGVVNRWDGYADGYLLRLTDGRFRLSRNPYSKTKNEFFTSVKNQAADELSKEVAGQALTNNFGNGQNMNESLENAAKAGQAVQEVLGSIEINKKEYLIFDSVNKSVETVNKSNLKEVLKKISSGC 301
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BLAST of mRNA_P-wetherbeei_contig59034.1.1 vs. uniprot
Match: A0A4Q7ZBG8_9GAMM (Uncharacterized protein n=1 Tax=Fluviicoccus keumensis TaxID=1435465 RepID=A0A4Q7ZBG8_9GAMM)

HSP 1 Score: 50.1 bits (118), Expect = 5.470e-5
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:  178 VADSLAKDAAQRALVRSLKDGQNLNESIENAANSGAVVSEVLGGIEINKKEYLIFDTRSGTAIAVNKDN 384
            V D L +  A  AL++ LK G+++ ES+E  AN        LG IEI  KEYL+F+  +   +A+N DN
Sbjct:   16 VLDDLQQRLAAEALLKQLKSGKSVRESME-VANLQQSALNALGSIEITDKEYLLFNEATRELLAINGDN 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y4XPF5_9BACT1.610e-6267.86Uncharacterized protein n=1 Tax=Cyclobacteriaceae ... [more]
A0A7Y4QZR1_9BACT1.110e-5360.00Uncharacterized protein n=1 Tax=Cyclobacteriaceae ... [more]
A0A4Q7ZBG8_9GAMM5.470e-540.58Uncharacterized protein n=1 Tax=Fluviicoccus keume... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59034contigP-wetherbeei_contig59034:10..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size492
Hectar predicted targeting categoryother localisation
Exons1
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.1811564-CDS-P-wetherbeei_contig59034:9..5011683186873.1811564-CDS-P-wetherbeei_contig59034:9..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59034 10..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59034.1.1prot_P-wetherbeei_contig59034.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59034 10..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59034.1.1

>prot_P-wetherbeei_contig59034.1.1 ID=prot_P-wetherbeei_contig59034.1.1|Name=mRNA_P-wetherbeei_contig59034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
SIFRGGKLAEFGQQVDGKMNIWDGYVDGYLLRMVDEKFRLSRNPYSKTKN
EFFTSIKNNVADSLAKDAAQRALVRSLKDGQNLNESIENAANSGAVVSEV
LGGIEINKKEYLIFDTRSGTAIAVNKDNLQDYVQSLNSSCGTSVPATWDK
IEDFIRQLNESCK*
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mRNA from alignment at P-wetherbeei_contig59034:10..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59034.1.1 ID=mRNA_P-wetherbeei_contig59034.1.1|Name=mRNA_P-wetherbeei_contig59034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig59034:10..501+ (Phaeothamnion wetherbeei SAG_119_79)
TCGATATTCAGAGGCGGAAAATTGGCAGAGTTTGGTCAGCAAGTTGATGG
CAAGATGAACATTTGGGACGGTTATGTAGATGGTTATCTGTTGCGAATGG
TGGATGAAAAATTCAGGTTAAGTCGCAATCCATATTCTAAAACTAAAAAT
GAATTTTTCACCTCCATAAAAAATAACGTAGCGGATTCACTGGCAAAAGA
TGCTGCACAACGTGCCTTGGTAAGAAGTCTTAAAGATGGGCAAAACCTGA
ACGAATCAATTGAGAATGCCGCAAACTCCGGTGCTGTTGTTAGCGAAGTA
TTGGGTGGAATTGAAATCAATAAAAAAGAGTATCTGATTTTTGATACCCG
GTCGGGAACTGCTATCGCGGTTAATAAAGATAATCTTCAGGATTATGTTC
AATCGTTAAACTCAAGCTGCGGAACTTCAGTTCCGGCAACATGGGATAAG
ATTGAAGACTTTATTCGTCAGCTTAATGAAAGTTGTAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59034:10..501+

>mRNA_P-wetherbeei_contig59034.1.1 ID=mRNA_P-wetherbeei_contig59034.1.1|Name=mRNA_P-wetherbeei_contig59034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig59034:10..501+ (Phaeothamnion wetherbeei SAG_119_79)
TCGATATTCAGAGGCGGAAAATTGGCAGAGTTTGGTCAGCAAGTTGATGG
CAAGATGAACATTTGGGACGGTTATGTAGATGGTTATCTGTTGCGAATGG
TGGATGAAAAATTCAGGTTAAGTCGCAATCCATATTCTAAAACTAAAAAT
GAATTTTTCACCTCCATAAAAAATAACGTAGCGGATTCACTGGCAAAAGA
TGCTGCACAACGTGCCTTGGTAAGAAGTCTTAAAGATGGGCAAAACCTGA
ACGAATCAATTGAGAATGCCGCAAACTCCGGTGCTGTTGTTAGCGAAGTA
TTGGGTGGAATTGAAATCAATAAAAAAGAGTATCTGATTTTTGATACCCG
GTCGGGAACTGCTATCGCGGTTAATAAAGATAATCTTCAGGATTATGTTC
AATCGTTAAACTCAAGCTGCGGAACTTCAGTTCCGGCAACATGGGATAAG
ATTGAAGACTTTATTCGTCAGCTTAATGAAAGTTGTAAGTAA
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